RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 EVPLQ92817 2033 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 SYNJ2BP-COX16A0A087WUM0 186 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 MAP3K13O43283 966 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 UBTFL6P0CB48 400 aaPredicted RBP12.63□□□□□ -0.39
CLIP3-201ENST00000360535 GMPRP36959 345 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 GRIA1P42261 906 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 AQP5P55064 265 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 MAP3K10Q02779 954 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 PPP1R2P3Q6NXS1 205 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 NDUFAF2Q8N183 169 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 MINDY3Q9H8M7 445 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 IL1RAPL1Q9NZN1 696 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 COX16Q9P0S2 106 aa12.63□□□□□ -0.39
CLIP3-201ENST00000360535 SPDYE16A6NNV3 312 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 FARP2O94887 1054 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 ATP6V1C1P21283 382 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 KLC1Q07866 573 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 MPP5Q8N3R9 675 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 TEX9Q8N6V9 391 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 UBR7Q8N806 425 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 C7orf31Q8N865 590 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 NRG4Q8WWG1 115 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SLC44A1Q8WWI5 657 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 LPIN3Q9BQK8 851 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 APOL6Q9BWW8 343 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 ASNSD1Q9NWL6 643 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 CPSF3Q9UKF6 684 aaKnown RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 MTO1Q9Y2Z2 717 aaKnown RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 COL11A1P12107 1806 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 TRIP11Q15643 1979 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 ARHGAP42A6NI28 874 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 PIGRP01833 764 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 DLDP09622 509 aaKnown RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 RNF220Q5VTB9 566 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 FAM160B1Q5W0V3 765 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 POLNQ7Z5Q5 900 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 TREML1Q86YW5 311 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SCUBE3Q8IX30 993 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 EFCAB3Q8N7B9 438 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 POU5F2Q8N7G0 328 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SLC4A11Q8NBS3 891 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SMC1BQ8NDV3 1235 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SPDYE1Q8NFV5 336 aaPredicted RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 E2F7Q96AV8 911 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 ALKBH8Q96BT7 664 aaKnown RBP12.62□□□□□ -0.39
CLIP3-201ENST00000360535 SAR1AQ9NR31 198 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 LRRC42Q9Y546 428 aa12.62□□□□□ -0.39
CLIP3-201ENST00000360535 LACTBL1A8MY62 500 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 KRT37O76014 449 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 ZCCHC18P0CG32 403 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 VHLP40337 213 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SLC18A1P54219 525 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 ATXN1P54253 815 aaKnown RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 MCCD1P59942 119 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 UBAP2LQ14157 1087 aaKnown RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PRKD1Q15139 912 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 AMHR2Q16671 573 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 CA9Q16790 459 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 DCAF15Q66K64 600 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 JADE1Q6IE81 842 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 C1orf127Q8N9H9 656 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PPFIBP2Q8ND30 876 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PPP1R13LQ8WUF5 828 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SEPT1Q8WYJ6 367 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 ATXN7L3BQ96GX2 97 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 TMEM134Q9H6X4 195 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 RSAD1Q9HA92 442 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PIDD1Q9HB75 910 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 CENPFP49454 3210 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 LYPLA1O75608 230 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 USP1O94782 785 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PSMG1O95456 288 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 OSBPP22059 807 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 ABCD1P33897 745 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 YWHAZP63104 245 aaKnown RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 ZPBP2Q6X784 338 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 RSPH3Q86UC2 560 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SLC26A11Q86WA9 606 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 NIPA2Q8N8Q9 360 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 MTMR14Q8NCE2 650 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SHKBP1Q8TBC3 707 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 EBF4Q9BQW3 602 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 B3GNT5Q9BYG0 378 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SMYD2Q9NRG4 433 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SIX4Q9UIU6 781 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 CORO1CQ9ULV4 474 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PCDHGC3Q9UN70 934 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SNRPAP09012 282 aaKnown RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 GPD1P21695 349 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 EFNA5P52803 228 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 SATB1Q01826 763 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 CCDC142Q17RM4 750 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 GJC2Q5T442 439 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 TTC39BQ5VTQ0 682 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 MAP1SQ66K74 1059 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 TRNP1Q6NT89 227 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 EFCAB12Q6NXP0 572 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 MPZL3Q6UWV2 235 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 LRRC74BQ6ZQY2 392 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms