RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 BCO2Q9BYV7 579 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 VCX3BQ9H321 246 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 VCX3AQ9NNX9 186 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 USP15Q9Y4E8 981 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 SPTLC1O15269 473 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 SNX3O60493 162 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 ASPAP45381 313 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 RCN1Q15293 331 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 SLC44A4Q53GD3 710 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 SNX30Q5VWJ9 437 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 C16orf87Q6PH81 154 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 NCCRP1Q6ZVX7 275 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 LRRC8DQ7L1W4 858 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 PIGWQ7Z7B1 504 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 LRRC8CQ8TDW0 803 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 IMPG2Q9BZV3 1241 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 NIF3L1Q9GZT8 377 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 INIPQ9NRY2 104 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 RGS18Q9NS28 235 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 NOCTQ9UK39 431 aaKnown RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 BARX2Q9UMQ3 279 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 TRIP11Q15643 1979 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 INPPL1O15357 1258 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 KRT36O76013 467 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 TMCC1O94876 653 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ITGB3P05106 788 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 GSTA1P08263 222 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ATF7P17544 494 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 MLH1P40692 756 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF132P52740 706 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 RBP5P82980 135 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 BTKQ06187 659 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 LBRQ14739 615 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ACAP1Q15027 740 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 TMEM130Q8N3G9 435 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 GSTCDQ8NEC7 633 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 P3H4Q92791 437 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ERP27Q96DN0 273 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 HSPBAP1Q96EW2 488 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 TRIM11Q96F44 468 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 SPATA17Q96L03 361 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PPP1R10Q96QC0 940 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 TUBGCP5Q96RT8 1024 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 FAM124BQ9H5Z6 455 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 DENND2DQ9H6A0 471 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ARHGEF3Q9NR81 526 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 RASAL2Q9UJF2 1139 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 UBQLN1Q9UMX0 589 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 GIT1Q9Y2X7 761 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 A0A087X0T9 212 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PTGESO14684 152 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 FAM228BP0C875 321 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 SKIP12755 728 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 FAM189BP81408 668 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 FAAP100Q0VG06 881 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 NAB2Q15742 525 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF699Q32M78 642 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 AGMOQ6ZNB7 445 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF598Q86UK7 904 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 RTN4RL1Q86UN2 441 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ATXN2LQ8WWM7 1075 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 DDX1Q92499 740 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 SLC35B4Q969S0 331 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 DHRS1Q96LJ7 313 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PACSIN1Q9BY11 444 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 TBK1Q9UHD2 729 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 HEMK1Q9Y5R4 338 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 DDX3XO00571 662 aaKnown RBP eCLIP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PIRO00625 290 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 TLR3O15455 904 aaKnown RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 NBNO60934 754 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ECHS1P30084 290 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PLTPP55058 493 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 BNIP1Q12981 228 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PDE1CQ14123 709 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 HACE1Q8IYU2 909 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 LRRC52Q8N7C0 313 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 BEST2Q8NFU1 509 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 LNX1Q8TBB1 728 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 EPS8L1Q8TE68 723 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 RNF25Q96BH1 459 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-203ENST00000354674 LRRC45Q96CN5 670 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 HAUS1Q96CS2 278 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 DTNBP1Q96EV8 351 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PBKQ96KB5 322 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ARPC5LQ9BPX5 153 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 PARP2Q9UGN5 583 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 ADAMTS1Q9UHI8 967 aa10.55□□□□□ -0.72
SYNE1-203ENST00000354674 MEIS3P2A8K0S8 358 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 PJA2O43164 708 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 CYP26A1O43174 497 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 SUN1O94901 812 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 PGM3O95394 542 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 LRPAP1P30533 357 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 POLR2BP30876 1174 aaKnown RBP10.54□□□□□ -0.72
SYNE1-203ENST00000354674 CCDC92Q53HC0 331 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-203ENST00000354674 C10orf76Q5T2E6 689 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 DIS3LQ8TF46 1054 aaKnown RBP10.54□□□□□ -0.72
SYNE1-203ENST00000354674 NRG4Q8WWG1 115 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms