RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 OSBPL9Q96SU4 736 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PKMYT1Q99640 499 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TRIM7Q9C029 511 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RAB6CQ9H0N0 254 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ADAMTS10Q9H324 1103 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SEMA4AQ9H3S1 761 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 FZD8Q9H461 694 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 C7orf69Q9H7B7 122 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RBM12Q9NTZ6 932 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 ANKEF1Q9NU02 776 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 TBC1D7Q9P0N9 293 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SEL1LQ9UBV2 794 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 HDAC9Q9UKV0 1011 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TPX2Q9ULW0 747 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 HPCAL4Q9UM19 191 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TBX20Q9UMR3 447 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 EDARQ9UNE0 448 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NUMBLQ9Y6R0 609 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 FAM95CA0A1B0GW59 222 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 IQCA1LA6NCM1 817 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ZNF233A6NK53 670 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 GCOM1H8Y6P7 765 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 DVL2O14641 736 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CLSTN1O94985 981 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 MOCS3O95396 460 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SERPING1P05155 500 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SCG5P05408 212 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 POLR2MP0CAP2 368 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 EPB41P11171 864 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 POU3F2P20265 443 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 PPP1R2P41236 205 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 HMGCS2P54868 508 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NLRP11P59045 1033 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 ASIC1P78348 528 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CYP24A1Q07973 514 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 GRB14Q14449 540 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 STAT4Q14765 748 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PPP2R5AQ15172 486 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ZACNQ401N2 412 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 LRCH2Q5VUJ6 765 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CCNI2Q6ZMN8 369 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 ATG14Q6ZNE5 492 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CBWD2Q8IUF1 395 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 KLHDC8BQ8IXV7 354 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 C1orf131Q8NDD1 294 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 NEK9Q8TD19 979 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TCTN2Q96GX1 697 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CCDC140Q96MF4 163 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NAP1L4Q99733 375 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 JAM3Q9BX67 310 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 KRTAP4-9Q9BYQ8 210 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.49□□□□□ -2.01
VPS54-202ENST00000354504 ATP13A1Q9HD20 1204 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PDGFCQ9NRA1 345 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SEC63Q9UGP8 760 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 CPSF3Q9UKF6 684 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 INTUQ9ULD6 942 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 RABGAP1Q9Y3P9 1069 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PCDHB12Q9Y5F1 795 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 HCFC2Q9Y5Z7 792 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CFAP47Q6ZTR5 3102 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NUP205Q92621 2012 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SMG1Q96Q15 3661 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 BICDL2A1A5D9 508 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 MBLAC1A4D2B0 266 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 WDR64B1ANS9 1081 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 C19orf81C9J6K1 198 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TULP2O00295 520 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SIGLEC6O43699 453 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SGPL1O95470 568 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SUPT20HL2P0C7V6 817 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ZNF865P0CJ78 1059 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 ITGA4P13612 1032 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ENDOUP21128 410 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 NR2F2P24468 414 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PTX3P26022 381 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 MSNP26038 577 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 HMGB2P26583 209 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 CYP2C19P33261 490 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 UBA7P41226 1012 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TNFSF9P41273 254 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 KIR3DL1P43629 444 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 GABRB2P47870 512 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ACTR2P61160 394 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SNRPFP62306 86 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 MGAT3Q09327 533 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 GRM1Q13255 1194 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PPIL2Q13356 520 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PLCB4Q15147 1175 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TERF2Q15554 542 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SUPT20HL1Q3ZLR7 823 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TIGD5Q53EQ6 642 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 UTP14CQ5TAP6 766 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 CES4AQ5XG92 561 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 C14orf80Q86SX3 495 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SLC47A2Q86VL8 602 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CD302Q8IX05 232 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CISD2Q8N5K1 135 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 RNF10Q8N5U6 811 aaKnown RBP2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms