RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 TRIM11Q96F44 468 aa13.65□□□□□ -0.23
COL18A1-201ENST00000342220 MAGED2Q9UNF1 606 aaPredicted RBP13.65□□□□□ -0.23
COL18A1-201ENST00000342220 ZSWIM8A7E2V4 1837 aa13.65□□□□□ -0.23
COL18A1-201ENST00000342220 COQ9O75208 318 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CYP1A1P04798 512 aaPredicted RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CD48P09326 243 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 RARAP10276 462 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 VDRP11473 427 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CYP3A5P20815 502 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 BDNFP23560 247 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ADCY8P40145 1251 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 SLCO1A2P46721 670 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 POU5F1BQ06416 359 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ADIGQ0VDE8 80 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 MMRN1Q13201 1228 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 LAMB3Q13751 1172 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 GKAP1Q5VSY0 366 aaPredicted RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 MFSD7Q6UXD7 560 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 BZW1Q7L1Q6 419 aaKnown RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ZNF280BQ86YH2 543 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 MAB21L3Q8N8X9 362 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 PWWP2AQ96N64 755 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ZCWPW1Q9H0M4 648 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CNOT10Q9H9A5 744 aaKnown RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 KRT82Q9NSB4 513 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 R3HDM2Q9Y2K5 976 aaKnown RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CDH23Q9H251 3354 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 MIF4GDA9UHW6 222 aaKnown RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 PROSCO94903 275 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 HOXD8P13378 290 aaPredicted RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CHRNA3P32297 505 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 PEX5P50542 639 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 HADHBP55084 474 aaKnown RBP13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CDH6P55285 790 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 SV2CQ496J9 727 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ANKRD20A8PQ5CZ79 823 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 SPDYCQ5MJ68 293 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ZNF365Q70YC5 407 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 OSTM1Q86WC4 334 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 RHOT1Q8IXI2 618 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 CHMP6Q96FZ7 201 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 ADAM7Q9H2U9 754 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 BATF3Q9NR55 127 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 TTLL3Q9Y4R7 772 aa13.64□□□□□ -0.23
COL18A1-201ENST00000342220 DRG2P55039 364 aaKnown RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 C1QTNF12Q5T7M4 302 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 EPS8L3Q8TE67 593 aaKnown RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 HERPUD2Q9BSE4 406 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 FAM129AQ9BZQ8 928 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 DHX35Q9H5Z1 703 aaKnown RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 CHCHD3Q9NX63 227 aaKnown RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 PLXNA1Q9UIW2 1896 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 ZBBXA8MT70 800 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SCAMP3O14828 347 aaKnown RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 PMM2O15305 246 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 RGS16O15492 202 aaPredicted RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 CREB3O43889 395 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 TADA2AO75478 443 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SOAT2O75908 522 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 ZSCAN5DPP0CG00 497 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 TFE3P19532 575 aaPredicted RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 ATICP31939 592 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 KYAT1Q16773 422 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 TIGD5Q53EQ6 642 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SLC30A9Q6PML9 568 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SLC13A5Q86YT5 568 aaPredicted RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 DIS3LQ8TF46 1054 aaKnown RBP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 TMEM209Q96SK2 561 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 OSBPL8Q9BZF1 889 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 WNT8AQ9H1J5 351 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 TMPRSS4Q9NRS4 437 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.63□□□□□ -0.237e-7■■■■□ 19.8
COL18A1-201ENST00000342220 DNAJB4Q9UDY4 337 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 IP6K2Q9UHH9 426 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 Q9Y3F1 56 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SGK1O00141 431 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 PRPSAP2O60256 369 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 BEST1O76090 585 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 SDC4P31431 198 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 ADCY1Q08828 1119 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 ZNF518BQ9C0D4 1074 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 LMCD1Q9NZU5 365 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 PCYOX1Q9UHG3 505 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 NR2E3Q9Y5X4 410 aa13.63□□□□□ -0.23
COL18A1-201ENST00000342220 ETS1P14921 441 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 DNAJB2P25686 324 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 BSPRYQ5W0U4 402 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 PIGZQ86VD9 579 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 B3GALNT2Q8NCR0 500 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 B4GALNT2Q8NHY0 566 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 PGM2Q96G03 612 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 SIK2Q9H0K1 926 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 ACTR5Q9H9F9 607 aaPredicted RBP13.62□□□□□ -0.23
COL18A1-201ENST00000342220 NME7Q9Y5B8 376 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 PCDHA3Q9Y5H8 950 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 CITO14578 2027 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 SCN1AP35498 2009 aa13.62□□□□□ -0.23
COL18A1-201ENST00000342220 MOCS2O96007 188 aaPredicted RBP13.62□□□□□ -0.23
COL18A1-201ENST00000342220 TKTP29401 623 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms