RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 COG2Q14746 738 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 SIX1Q15475 284 aaPredicted RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 VPS72Q15906 364 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 UBAP2Q5T6F2 1119 aaKnown RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PRR23CQ6ZRP0 262 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 RIPOR1Q6ZS17 1223 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 ENOSF1Q7L5Y1 443 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 MTDHQ86UE4 582 aaKnown RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 AHI1Q8N157 1196 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 CMTR1Q8N1G2 835 aaKnown RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 MARCH10Q8NA82 808 aaPredicted RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 LINC00116Q8NCU8 138 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 SNX29Q8TEQ0 813 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 CAPSLQ8WWF8 208 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 APBB2Q92870 758 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 RMDN1Q96DB5 314 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 NSL1Q96IY1 281 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 FERD3LQ96RJ6 166 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PSD2Q9BQI7 771 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 RUBCNLQ9H714 662 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 KIAA1586Q9HCI6 787 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 WDR6Q9NNW5 1121 aaKnown RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 ARL8BQ9NVJ2 186 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 MCM9Q9NXL9 1143 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 BTG4Q9NY30 223 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 TAS2R1Q9NYW7 299 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 MOCS1Q9NZB8 636 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 SENP1Q9P0U3 644 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 KCNN3Q9UGI6 736 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 ARMCX3Q9UH62 379 aaPredicted RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 MAFFQ9ULX9 164 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 A0A0B4J203 849 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 E9PMD0 336 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PSMD11O00231 422 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 C2CD2LO14523 706 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PRPF4O43172 522 aaKnown RBP eCLIP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 RIPK2O43353 540 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 MAGEC1O60732 1142 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 SPATA31C1P0DKV0 1188 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 THRAP10827 490 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 ITGA4P13612 1032 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PRKCAP17252 672 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PMLP29590 882 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 EPS15P42566 896 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 ACTR3P61158 418 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 CLDN10P78369 228 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PRKCEQ02156 737 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PTK2Q05397 1052 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 DNAJC3Q13217 504 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 PTK6Q13882 451 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 NFE2Q16621 373 aaPredicted RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 EXOC3L4Q17RC7 722 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 USP41Q3LFD5 358 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 FIP1L1Q6UN15 594 aaKnown RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 HEATR3Q7Z4Q2 680 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 NLRX1Q86UT6 975 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 C7orf57Q8NEG2 295 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 CELF1Q92879 486 aaKnown RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 VPS35Q96QK1 796 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 IER2Q9BTL4 223 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 IL20Q9NYY1 176 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 TMOD2Q9NZR1 351 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 AMFRQ9UKV5 643 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF236Q9UL36 1845 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 COL4A4P53420 1690 aaPredicted RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 A8MU76 341 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 B8ZZF3 427 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 H7C0C1 242 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 FSCN2O14926 492 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 GABBR2O75899 941 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 C6orf222P0C671 652 aaPredicted RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 JAK1P23458 1154 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 CFL1P23528 166 aaKnown RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 PLTPP55058 493 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 NCKAP1LP55160 1127 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 PSMD6Q15008 389 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 SMU1Q2TAY7 513 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 KLHL38Q2WGJ6 581 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 EPC2Q52LR7 807 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 NDUFAF5Q5TEU4 345 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 LPCAT4Q643R3 524 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 ITPRIPL1Q6GPH6 555 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 ZCCHC8Q6NZY4 707 aaKnown RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 ALKBH5Q6P6C2 394 aaKnown RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 RALGPS2Q86X27 583 aaPredicted RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 KSR1Q8IVT5 923 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 ICA1LQ8NDH6 482 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 RDM1Q8NG50 284 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 RPGRQ92834 1020 aaKnown RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 GPKOWQ92917 476 aaPredicted RBP eCLIP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 C1orf74Q96LT6 269 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 PANX3Q96QZ0 392 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 CCSER2Q9H7U1 834 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 SLC38A10Q9HBR0 1119 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 POLMQ9NP87 494 aaPredicted RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 DNAJC17Q9NVM6 304 aaKnown RBP6.9□□□□□ -1.31
ZNF540-201ENST00000316433 WDR70Q9NW82 654 aa6.9□□□□□ -1.31
ZNF540-201ENST00000316433 EMSYQ7Z589 1322 aa6.89□□□□□ -1.31
ZNF540-201ENST00000316433 GOLGA8QA0A0J9YX86 632 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms