RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 NEK3P51956 506 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 MMRN1Q13201 1228 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 SKIDA1Q1XH10 827 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 C15orf59Q2T9L4 293 aaPredicted RBP11.64□□□□□ -0.55
MSH3-201ENST00000265081 SWT1Q5T5J6 900 aaKnown RBP11.64□□□□□ -0.55
MSH3-201ENST00000265081 SPRYD7Q5W111 196 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 OLFML2BQ68BL8 750 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 ZNF534Q76KX8 674 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 SPATA21Q7Z572 469 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 HAUS1Q96CS2 278 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 TGS1Q96RS0 853 aaKnown RBP11.64□□□□□ -0.55
MSH3-201ENST00000265081 PARK7Q99497 189 aaKnown RBP11.64□□□□□ -0.55
MSH3-201ENST00000265081 RXFP1Q9HBX9 757 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 FGFR1OP2Q9NVK5 253 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 SNTG2Q9NY99 539 aa11.64□□□□□ -0.55
MSH3-201ENST00000265081 DCAF8L1A6NGE4 600 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 TM9SF1O15321 606 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 FGFR1P11362 822 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 PDGFRAP16234 1089 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 PRKCHP24723 683 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 RIPK1Q13546 671 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 TTLL12Q14166 644 aaPredicted RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 FBXW10Q5XX13 1052 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 RFX6Q8HWS3 928 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 IGDCC3Q8IVU1 814 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 SRRM1Q8IYB3 904 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 BEST2Q8NFU1 509 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 SPATA18Q8TC71 538 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 ELAC2Q9BQ52 826 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 TRABDQ9H4I3 376 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 UBQLN1Q9UMX0 589 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 DGKIO75912 1065 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 RBP3P10745 1247 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 TPSB2P20231 275 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 PNPLA4P41247 253 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 BST2Q10589 180 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 TPSAB1Q15661 275 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 SLC44A1Q8WWI5 657 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 APBB2Q92870 758 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 PAK5Q9P286 719 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 XPO7Q9UIA9 1087 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 TTLL3Q9Y4R7 772 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 CD4P01730 458 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 ETV4P43268 484 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 NR2C2P49116 596 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 SNX16P57768 344 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 LRRC14Q15048 493 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 TMED2Q15363 201 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 NPNTQ6UXI9 565 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 STRADAQ7RTN6 431 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 FAM71DQ8N9W8 422 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 FBXO36Q8NEA4 188 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 KCTD13Q8WZ19 329 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 ALKBH8Q96BT7 664 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 LRRC39Q96DD0 335 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 HSFY1Q96LI6 401 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 QKIQ96PU8 341 aaKnown RBP eCLIP11.63□□□□□ -0.552e-6■■■■■ 33.1
MSH3-201ENST00000265081 SNRNP25Q9BV90 132 aaKnown RBP11.63□□□□□ -0.55
MSH3-201ENST00000265081 ABCF3Q9NUQ8 709 aa11.63□□□□□ -0.55
MSH3-201ENST00000265081 CFAP73A6NFT4 308 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 SPTLC1O15269 473 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 BANF1O75531 89 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 CCNFP41002 786 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 YARSP54577 528 aaKnown RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 BCAT1P54687 386 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 IL9RQ01113 521 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 WDR78Q5VTH9 848 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 CYP4F22Q6NT55 531 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 DPH6Q7L8W6 267 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 CAND1Q86VP6 1230 aaKnown RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 CHSY1Q86X52 802 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 ZNF398Q8TD17 642 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 RSAD2Q8WXG1 361 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 POPDC2Q9HBU9 364 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 SETD4Q9NVD3 440 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 TRIP12Q14669 1992 aaPredicted RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 GABRDO14764 452 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 EDF1O60869 148 aaKnown RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 CDH6P55285 790 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 CA9Q16790 459 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 TMEM132AQ24JP5 1023 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 NME8Q8N427 588 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 TOP6BLQ8N6T0 577 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 SMG8Q8ND04 991 aaKnown RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 FAM172AQ8WUF8 416 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 TMEM40Q8WWA1 233 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 HSPH1Q92598 858 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 C18orf25Q96B23 403 aaPredicted RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 SYNCQ9H7C4 482 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 PCSK1NQ9UHG2 260 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 PLXNA3P51805 1871 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 PRPSAP2O60256 369 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 SUN1O94901 812 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 RPA3P35244 121 aaPredicted RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 ACADSBP45954 432 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 NCALDP61601 193 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 YWHAZP63104 245 aaKnown RBP11.62□□□□□ -0.55
MSH3-201ENST00000265081 PDE4CQ08493 712 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 MAP7D3Q8IWC1 876 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms