RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 WDR83Q9BRX9 315 aaKnown RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 ZNF518BQ9C0D4 1074 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 SEPT10Q9P0V9 454 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 MTO1Q9Y2Z2 717 aaKnown RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 FARP1Q9Y4F1 1045 aaPredicted RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 LRRC37AA6NMS7 1700 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 CXorf49A8MYA2 514 aaPredicted RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 APOC4-APOC2K7ER74 178 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 SMNDC1O75940 238 aaKnown RBP eCLIP13.15□□□□□ -0.31e-10■■■□□ 18.1
LIG1-201ENST00000263274 APOC2P02655 101 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 HMGCRP04035 888 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 CRADDP78560 199 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 SLC25A11Q02978 314 aaKnown RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 BST1Q10588 318 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 BLMHQ13867 455 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 PPP2R5DQ14738 602 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 WASHC2DQ5SRD0 308 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 TEX9Q8N6V9 391 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 SEPT1Q8WYJ6 367 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 APOPT1Q96IL0 206 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 ACO2Q99798 780 aaKnown RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 DDX50Q9BQ39 737 aaKnown RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 CEP41Q9BYV8 373 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 RSAD1Q9HA92 442 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 CYP4F11Q9HBI6 524 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 KANSL3Q9P2N6 904 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 NRXN2Q9P2S2 1712 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 SPDYE5A6NIY4 337 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 MEI4A8MW99 385 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 E5RJQ4 531 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 SNRPAP09012 282 aaKnown RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 ZCCHC18P0CG32 403 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 VHLP40337 213 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 GADL1Q6ZQY3 521 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 NLGN2Q8NFZ4 835 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 AGR3Q8TD06 166 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 CPB2Q96IY4 423 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 PIWIL1Q96J94 861 aaKnown RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 HOXC10Q9NYD6 342 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 MAFBQ9Y5Q3 323 aaPredicted RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 SKIP12755 728 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 OSBPP22059 807 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 RANBP1P43487 201 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 EFNA5P52803 228 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 TFDP2Q14188 446 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 C1orf146Q5VVC0 180 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 XYLT1Q86Y38 959 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 CRLF3Q8IUI8 442 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 MAP7D3Q8IWC1 876 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 POU5F2Q8N7G0 328 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 DEPDC1BQ8WUY9 529 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 DHX35Q9H5Z1 703 aaKnown RBP13.15□□□□□ -0.3
LIG1-201ENST00000263274 STYXL1Q9Y6J8 313 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 WASF2Q9Y6W5 498 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 QSER1Q2KHR3 1735 aa13.15□□□□□ -0.3
LIG1-201ENST00000263274 TRUB2O95900 331 aaKnown RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 RPS6KA3P51812 740 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 SESN2P58004 480 aaPredicted RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 HSDL1Q3SXM5 330 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 SLC26A11Q86WA9 606 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 ARHGAP24Q8N264 748 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 COPS5Q92905 334 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 KLC2Q9H0B6 622 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 SAR1AQ9NR31 198 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 ZNFX1Q9P2E3 1918 aaKnown RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 MAP3K7O43318 606 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 MSCO60682 206 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 GNAT1P11488 350 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 GNAZP19086 355 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 ATP6V1C1P21283 382 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 GPD1P21695 349 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 ASPAP45381 313 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 ZNF132P52740 706 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 AP3M2P53677 418 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 AMHR2Q16671 573 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 TTC39BQ5VTQ0 682 aaPredicted RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 RSPH3Q86UC2 560 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 SCUBE3Q8IX30 993 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 VCXQ9H320 206 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 AKT3Q9Y243 479 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 NFASCO94856 1347 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 MYO18AQ92614 2054 aaKnown RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 LOC100653049A0A140TA62 436 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 TBX10O75333 385 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 KRT34O76011 436 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 WFS1O76024 890 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 LMNAP02545 664 aaKnown RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 AMPD1P23109 780 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 STIP1P31948 543 aaKnown RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 TUBP50607 506 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 CDCA2Q69YH5 1023 aaPredicted RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 EFCAB12Q6NXP0 572 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 TRMT10BQ6PF06 316 aaKnown RBP13.14□□□□□ -0.31
LIG1-201ENST00000263274 EFCAB3Q8N7B9 438 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 FBXO27Q8NI29 283 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 SDCBP2Q9H190 292 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 PPCSQ9HAB8 311 aa13.14□□□□□ -0.31
LIG1-201ENST00000263274 DOCK5Q9H7D0 1870 aa13.13□□□□□ -0.31
LIG1-201ENST00000263274 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.13□□□□□ -0.31
LIG1-201ENST00000263274 LACTBL1A8MY62 500 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms