RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W LAM6Q08001 693 aa7.9□□□□□ -1.14
CAF40YNL288W SPT7P35177 1332 aa7.89□□□□□ -1.15
CAF40YNL288W TRM1P15565 570 aaKnown RBP7.89□□□□□ -1.15
CAF40YNL288W PRP40P33203 583 aaKnown RBP7.89□□□□□ -1.15
CAF40YNL288W RPN11P43588 306 aaKnown RBP7.89□□□□□ -1.15
CAF40YNL288W BDP1P46678 594 aa7.89□□□□□ -1.15
CAF40YNL288W YJL181WP46987 611 aa7.89□□□□□ -1.15
CAF40YNL288W PAP2P53632 584 aaKnown RBP7.89□□□□□ -1.15
CAF40YNL288W IOC4Q04213 475 aa7.89□□□□□ -1.15
CAF40YNL288W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.88□□□□□ -1.15not detected
CAF40YNL288W PKH3Q03306 898 aaPredicted RBP7.88□□□□□ -1.15
CAF40YNL288W COBP00163 385 aa7.87□□□□□ -1.15
CAF40YNL288W SSA2P10592 639 aaKnown RBP7.87□□□□□ -1.15
CAF40YNL288W YJU3P28321 313 aa7.87□□□□□ -1.15
CAF40YNL288W ADE16P54113 591 aaKnown RBP7.87□□□□□ -1.15
CAF40YNL288W CTF4Q01454 927 aa7.87□□□□□ -1.15
CAF40YNL288W YKR075CP36155 307 aa7.86□□□□□ -1.15
CAF40YNL288W AKL1P38080 1108 aaKnown RBP7.86□□□□□ -1.15
CAF40YNL288W DSD1P53095 428 aa7.86□□□□□ -1.15
CAF40YNL288W YDL206WQ12424 762 aa7.86□□□□□ -1.15
CAF40YNL288W MOD5P07884 428 aa7.85□□□□□ -1.15
CAF40YNL288W INP54Q08227 384 aaKnown RBP7.85□□□□□ -1.15
CAF40YNL288W ALR1Q08269 859 aa7.85□□□□□ -1.15
CAF40YNL288W ARG8P18544 423 aa7.84□□□□□ -1.15
CAF40YNL288W GUA1P38625 525 aaKnown RBP7.84□□□□□ -1.15
CAF40YNL288W NPR2P39923 615 aa7.84□□□□□ -1.15
CAF40YNL288W RPA14P50106 137 aa7.84□□□□□ -1.15
CAF40YNL288W ATG13Q06628 738 aa7.84□□□□□ -1.15
CAF40YNL288W PDC1P06169 563 aaKnown RBP7.83□□□□□ -1.16
CAF40YNL288W HSP104P31539 908 aaKnown RBP7.83□□□□□ -1.16
CAF40YNL288W HXT10P43581 546 aa7.83□□□□□ -1.16
CAF40YNL288W LEO1P38439 464 aa7.82□□□□□ -1.16
CAF40YNL288W RRP46P53256 223 aaPredicted RBP7.82□□□□□ -1.16
CAF40YNL288W NUP145P49687 1317 aa7.81□□□□□ -1.16
CAF40YNL288W SRC1Q03707 834 aa7.81□□□□□ -1.16
CAF40YNL288W AOS1Q06624 347 aa7.81□□□□□ -1.16
CAF40YNL288W YPR097WQ06839 1073 aa7.81□□□□□ -1.16
CAF40YNL288W OSM1P21375 501 aaKnown RBP7.8□□□□□ -1.16
CAF40YNL288W TPD3P31383 635 aa7.8□□□□□ -1.16
CAF40YNL288W RSC30P38781 883 aa7.8□□□□□ -1.16
CAF40YNL288W RTR1P40084 226 aaPredicted RBP7.8□□□□□ -1.16
CAF40YNL288W PUS5Q06244 254 aa7.8□□□□□ -1.16
CAF40YNL288W RIM15P43565 1770 aa7.79□□□□□ -1.16
CAF40YNL288W GRX1P25373 110 aaKnown RBP7.79□□□□□ -1.16
CAF40YNL288W NTH2P35172 780 aa7.79□□□□□ -1.16
CAF40YNL288W YBL086CP38177 466 aa7.79□□□□□ -1.16
CAF40YNL288W RRD1P40454 393 aaKnown RBP7.79□□□□□ -1.16
CAF40YNL288W ALD2P47771 506 aa7.79□□□□□ -1.16
CAF40YNL288W RAD59Q12223 238 aa7.79□□□□□ -1.16
CAF40YNL288W KCC4P25389 1037 aa7.78□□□□□ -1.16
CAF40YNL288W UGA2P38067 497 aa7.78□□□□□ -1.16
CAF40YNL288W CLA4P48562 842 aa7.78□□□□□ -1.16
CAF40YNL288W LYS4P49367 693 aaPredicted RBP7.78□□□□□ -1.16
CAF40YNL288W YBP2P53169 641 aa7.78□□□□□ -1.16
CAF40YNL288W HED1Q03937 162 aa7.78□□□□□ -1.16
CAF40YNL288W PRD1P25375 712 aa7.77□□□□□ -1.17
CAF40YNL288W RAD4P14736 754 aa7.76□□□□□ -1.17
CAF40YNL288W AIR1P40507 360 aaKnown RBP7.76□□□□□ -1.17
CAF40YNL288W YNL050CP53952 270 aa7.76□□□□□ -1.17
CAF40YNL288W HPC2Q01448 625 aa7.76□□□□□ -1.17
CAF40YNL288W UGA3P26370 528 aa7.75□□□□□ -1.17
CAF40YNL288W CTH1P47976 325 aa7.75□□□□□ -1.17
CAF40YNL288W LYS2P07702 1392 aa7.74□□□□□ -1.17
CAF40YNL288W RPP0P05317 312 aaKnown RBP7.74□□□□□ -1.17
CAF40YNL288W CDC4P07834 779 aa7.74□□□□□ -1.17
CAF40YNL288W RMT2Q03305 412 aa7.74□□□□□ -1.17
CAF40YNL288W YDL144CQ07589 356 aa7.74□□□□□ -1.17
CAF40YNL288W BUG1Q12191 341 aa7.74□□□□□ -1.17
CAF40YNL288W BRL1P38770 471 aa7.73□□□□□ -1.17
CAF40YNL288W MPP10P47083 593 aaKnown RBP7.73□□□□□ -1.17
CAF40YNL288W SYH1Q02875 849 aaKnown RBP7.73□□□□□ -1.17
CAF40YNL288W NSE3Q05541 303 aa7.73□□□□□ -1.17
CAF40YNL288W KIP2P28743 706 aa7.72□□□□□ -1.17
CAF40YNL288W MAM1P40065 302 aa7.72□□□□□ -1.17
CAF40YNL288W MDG1P53885 366 aa7.72□□□□□ -1.17
CAF40YNL288W THI22Q06490 572 aa7.72□□□□□ -1.17
CAF40YNL288W ZDS1P50111 915 aaKnown RBP7.71□□□□□ -1.18
CAF40YNL288W UTP22P53254 1237 aaPredicted RBP7.71□□□□□ -1.18
CAF40YNL288W ALD3P54114 506 aa7.71□□□□□ -1.18
CAF40YNL288W ALE1Q08548 619 aa7.71□□□□□ -1.18
CAF40YNL288W YFR016CP43597 1233 aaKnown RBP7.7□□□□□ -1.18
CAF40YNL288W IXR1P33417 597 aa7.69□□□□□ -1.18
CAF40YNL288W VPS27P40343 622 aaKnown RBP7.69□□□□□ -1.18
CAF40YNL288W TFB3Q03290 321 aa7.69□□□□□ -1.18
CAF40YNL288W GYP7P48365 746 aa7.68□□□□□ -1.18
CAF40YNL288W HEF3P53978 1044 aaKnown RBP7.68□□□□□ -1.18
CAF40YNL288W RTT109Q07794 436 aa7.68□□□□□ -1.18
CAF40YNL288W SAP155P43612 1002 aa7.67□□□□□ -1.18
CAF40YNL288W CDC45Q08032 650 aa7.67□□□□□ -1.18
CAF40YNL288W SSP2Q08646 371 aa7.67□□□□□ -1.18
CAF40YNL288W PHM7Q12252 991 aa7.67□□□□□ -1.18
CAF40YNL288W MAK16P10962 306 aaPredicted RBP7.66□□□□□ -1.18
CAF40YNL288W VAC17P25591 423 aa7.66□□□□□ -1.18
CAF40YNL288W YBL036CP38197 257 aa7.66□□□□□ -1.18
CAF40YNL288W RRT14P40470 206 aa7.66□□□□□ -1.18
CAF40YNL288W HGH1P48362 394 aaKnown RBP7.66□□□□□ -1.18
CAF40YNL288W BMS1Q08965 1183 aaKnown RBP7.66□□□□□ -1.18
CAF40YNL288W MET32Q12041 191 aa7.66□□□□□ -1.18
CAF40YNL288W UTP10P42945 1769 aaKnown RBP7.66□□□□□ -1.18
CAF40YNL288W COQ4O13525 335 aa7.65□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 8.1 ms