RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-212ENST00000636194 RALYLQ86SE5 291 aaKnown RBP7.18□□□□□ -1.26
SCN1A-212ENST00000636194 TIGD1Q96MW7 591 aa7.18□□□□□ -1.26
SCN1A-212ENST00000636194 NOP2P46087 812 aaKnown RBP7.17□□□□□ -1.26
SCN1A-212ENST00000636194 CCDC73Q6ZRK6 1079 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 SHTN1A0MZ66 631 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 KRT18P05783 430 aaKnown RBP7.17□□□□□ -1.26
SCN1A-212ENST00000636194 FERP16591 822 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 SLC4A10Q6U841 1118 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 RRP7BPQ9NSQ0 103 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 SLKQ9H2G2 1235 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-212ENST00000636194 BICD2Q8TD16 824 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 FERMT1Q9BQL6 677 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 DDX58O95786 925 aaKnown RBP7.17□□□□□ -1.26
SCN1A-212ENST00000636194 B4GALNT3Q6L9W6 998 aa7.17□□□□□ -1.26
SCN1A-212ENST00000636194 C9orf78Q9NZ63 289 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-212ENST00000636194 DEKP35659 375 aaKnown RBP7.16□□□□□ -1.26
SCN1A-212ENST00000636194 SREK1Q8WXA9 508 aaKnown RBP7.16□□□□□ -1.26
SCN1A-212ENST00000636194 LRRC45Q96CN5 670 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 PPP1R9BQ96SB3 815 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 CCDC181Q5TID7 509 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 COMMD10Q9Y6G5 202 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 TAX1BP1Q86VP1 789 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 FYB1O15117 783 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 CCDC150Q8NCX0 1101 aa7.16□□□□□ -1.26
SCN1A-212ENST00000636194 U2AF1L5P0DN76 240 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-212ENST00000636194 U2AF1Q01081 240 aaKnown RBP eCLIP7.15□□□□□ -1.26
SCN1A-212ENST00000636194 CEP162Q5TB80 1403 aa7.15□□□□□ -1.26
SCN1A-212ENST00000636194 IFT57Q9NWB7 429 aa7.15□□□□□ -1.26
SCN1A-212ENST00000636194 JAKMIP3Q5VZ66 844 aa7.15□□□□□ -1.26
SCN1A-212ENST00000636194 MPHOSPH10O00566 681 aaKnown RBP7.15□□□□□ -1.27
SCN1A-212ENST00000636194 NGDNQ8NEJ9 315 aaKnown RBP7.15□□□□□ -1.27
SCN1A-212ENST00000636194 PPP4R3AQ6IN85 833 aa7.15□□□□□ -1.27
SCN1A-212ENST00000636194 PPP1R12BO60237 982 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-212ENST00000636194 MYH10P35580 1976 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 MATR3P43243 847 aaKnown RBP eCLIP7.14□□□□□ -1.271e-10■■■■■ 37.8
SCN1A-212ENST00000636194 NOL8Q76FK4 1167 aaKnown RBP7.14□□□□□ -1.27
SCN1A-212ENST00000636194 FHAD1B1AJZ9 1412 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 SCRIBQ14160 1630 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 MRPS9P82933 396 aaKnown RBP7.14□□□□□ -1.27
SCN1A-212ENST00000636194 PRPF31Q8WWY3 499 aaKnown RBP7.14□□□□□ -1.27
SCN1A-212ENST00000636194 RILPL2Q969X0 211 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 MICAL3Q7RTP6 2002 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 DAAM2Q86T65 1068 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 RAB3IL1Q8TBN0 382 aa7.14□□□□□ -1.27
SCN1A-212ENST00000636194 DDX49Q9Y6V7 483 aaKnown RBP7.14□□□□□ -1.27
SCN1A-212ENST00000636194 NINLQ9Y2I6 1382 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 OPA1O60313 960 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 NASPP49321 788 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-212ENST00000636194 LRSAM1Q6UWE0 723 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 PIBF1Q8WXW3 757 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 UQCRHLA0A096LP55 91 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 RGS22Q8NE09 1264 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 ZCCHC6Q5VYS8 1495 aaKnown RBP7.13□□□□□ -1.27
SCN1A-212ENST00000636194 DHX37Q8IY37 1157 aaKnown RBP7.13□□□□□ -1.27
SCN1A-212ENST00000636194 LETM1O95202 739 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-212ENST00000636194 HOOK3Q86VS8 718 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 PDILTQ8N807 584 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 BCL2L13Q9BXK5 485 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 FAM114A2Q9NRY5 505 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 MLECQ14165 292 aa7.13□□□□□ -1.27
SCN1A-212ENST00000636194 IFIT2P09913 472 aaKnown RBP7.12□□□□□ -1.27
SCN1A-212ENST00000636194 CLGNO14967 610 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 ERC2O15083 957 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 CAVIN1Q6NZI2 390 aaKnown RBP7.12□□□□□ -1.27
SCN1A-212ENST00000636194 JMYQ8N9B5 988 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 CENPHQ9H3R5 247 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 NOC2LQ9Y3T9 749 aaKnown RBP7.12□□□□□ -1.27
SCN1A-212ENST00000636194 CEP135Q66GS9 1140 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 DACH1Q9UI36 760 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 MAP2K1Q02750 393 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-212ENST00000636194 TEFQ10587 303 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 TNIP1Q15025 636 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 TSNARE1Q96NA8 513 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 PSMD1Q99460 953 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 SMC2O95347 1197 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 SMC1AQ14683 1233 aaKnown RBP7.12□□□□□ -1.27
SCN1A-212ENST00000636194 SEPT8Q92599 483 aa7.12□□□□□ -1.27
SCN1A-212ENST00000636194 GNL3LQ9NVN8 582 aaKnown RBP7.11□□□□□ -1.27
SCN1A-212ENST00000636194 ANO2Q9NQ90 1003 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 KINO60870 393 aaKnown RBP7.11□□□□□ -1.27
SCN1A-212ENST00000636194 VIMP08670 466 aaKnown RBP7.11□□□□□ -1.27
SCN1A-212ENST00000636194 CCDC39Q9UFE4 941 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 TTLL5Q6EMB2 1281 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 DDX11Q96FC9 970 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 ATP6V1E1P36543 226 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 TRIM22Q8IYM9 498 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 TBC1D2BQ9UPU7 963 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 PSMA5P28066 241 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 DDX12PQ92771 950 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 SYTL4Q96C24 671 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-212ENST00000636194 LRRCC1Q9C099 1032 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 BMP2KQ9NSY1 1161 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-212ENST00000636194 POLR3GO15318 223 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-212ENST00000636194 PDCP20941 246 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 TRIM5Q9C035 493 aa7.11□□□□□ -1.27
SCN1A-212ENST00000636194 NUCB2P80303 420 aa7.1□□□□□ -1.27
SCN1A-212ENST00000636194 CCDC27Q2M243 656 aa7.1□□□□□ -1.27
SCN1A-212ENST00000636194 GCOM1H8Y6P7 765 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-212ENST00000636194 KIF20AO95235 890 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms