RNA–Protein interactions for RNA: ENST00000635988.1

CACNA1A-220, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-220ENST00000635988 DEPDC5O75140 1603 aa18.8■□□□□ 0.6
CACNA1A-220ENST00000635988 IQSEC2Q5JU85 1478 aa18.8■□□□□ 0.6
CACNA1A-220ENST00000635988 CHMP5Q9NZZ3 219 aa18.8■□□□□ 0.6
CACNA1A-220ENST00000635988 MAP3K4Q9Y6R4 1608 aa18.8■□□□□ 0.6
CACNA1A-220ENST00000635988 TRAPPC8Q9Y2L5 1435 aa18.79■□□□□ 0.6
CACNA1A-220ENST00000635988 MORC1Q86VD1 984 aa18.79■□□□□ 0.6
CACNA1A-220ENST00000635988 TCP11L2Q8N4U5 519 aa18.79■□□□□ 0.6
CACNA1A-220ENST00000635988 MYH16Q9H6N6 1097 aa18.78■□□□□ 0.6
CACNA1A-220ENST00000635988 SHPRHQ149N8 1683 aa18.78■□□□□ 0.6
CACNA1A-220ENST00000635988 MYO3AQ8NEV4 1616 aa18.78■□□□□ 0.6
CACNA1A-220ENST00000635988 RLBP1P12271 317 aa18.78■□□□□ 0.6
CACNA1A-220ENST00000635988 XRCC6P12956 609 aaKnown RBP eCLIP18.77■□□□□ 0.6
CACNA1A-220ENST00000635988 CFAP70Q5T0N1 1121 aa18.77■□□□□ 0.6
CACNA1A-220ENST00000635988 CT47B1P0C2W7 299 aaPredicted RBP18.76■□□□□ 0.59
CACNA1A-220ENST00000635988 MVPQ14764 893 aaKnown RBP18.76■□□□□ 0.59
CACNA1A-220ENST00000635988 ABCA6Q8N139 1617 aa18.76■□□□□ 0.59
CACNA1A-220ENST00000635988 NEUROD2Q15784 382 aa18.76■□□□□ 0.59
CACNA1A-220ENST00000635988 ISY1Q9ULR0 285 aaKnown RBP18.76■□□□□ 0.59
CACNA1A-220ENST00000635988 CFAP53Q96M91 514 aa18.75■□□□□ 0.59
CACNA1A-220ENST00000635988 C22orf23Q9BZE7 217 aa18.75■□□□□ 0.59
CACNA1A-220ENST00000635988 ZFYVE16Q7Z3T8 1539 aa18.75■□□□□ 0.59
CACNA1A-220ENST00000635988 VWDEQ8N2E2 1590 aa18.75■□□□□ 0.59
CACNA1A-220ENST00000635988 NSD3Q9BZ95 1437 aa18.74■□□□□ 0.59
CACNA1A-220ENST00000635988 MRE11P49959 708 aa18.74■□□□□ 0.59
CACNA1A-220ENST00000635988 ZKSCAN2Q63HK3 967 aa18.74■□□□□ 0.59
CACNA1A-220ENST00000635988 CLCN1P35523 988 aa18.73■□□□□ 0.59
CACNA1A-220ENST00000635988 RRP7AQ9Y3A4 280 aaKnown RBP18.73■□□□□ 0.59
CACNA1A-220ENST00000635988 DDX11L8A8MPP1 907 aa18.73■□□□□ 0.59
CACNA1A-220ENST00000635988 TRAK2O60296 914 aa18.72■□□□□ 0.59
CACNA1A-220ENST00000635988 ARAP3Q8WWN8 1544 aa18.72■□□□□ 0.59
CACNA1A-220ENST00000635988 FTSJ3Q8IY81 847 aaKnown RBP18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 DZIP1LQ8IYY4 767 aaKnown RBP18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 PNNQ9H307 717 aaKnown RBP18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 ADGRF5Q8IZF2 1346 aa18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 HDAC1Q13547 482 aaPredicted RBP18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 TNNQ9UQP3 1299 aa18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 ADGRL1O94910 1474 aa18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 ZNF518AQ6AHZ1 1483 aa18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 NRXN1Q9ULB1 1477 aa18.71■□□□□ 0.59
CACNA1A-220ENST00000635988 USP32Q8NFA0 1604 aa18.7■□□□□ 0.58
CACNA1A-220ENST00000635988 BCL2L13Q9BXK5 485 aa18.7■□□□□ 0.58
CACNA1A-220ENST00000635988 HSCBQ8IWL3 235 aa18.7■□□□□ 0.58
CACNA1A-220ENST00000635988 SETBP1Q9Y6X0 1596 aa18.7■□□□□ 0.58
CACNA1A-220ENST00000635988 KIF1BO60333 1816 aa18.68■□□□□ 0.58
CACNA1A-220ENST00000635988 MFAP1P55081 439 aaKnown RBP18.68■□□□□ 0.58
CACNA1A-220ENST00000635988 IFT172Q9UG01 1749 aa18.68■□□□□ 0.58
CACNA1A-220ENST00000635988 MTHFSP49914 203 aa18.67■□□□□ 0.58
CACNA1A-220ENST00000635988 SPRYD3Q8NCJ5 442 aa18.67■□□□□ 0.58
CACNA1A-220ENST00000635988 GZF1Q9H116 711 aaPredicted RBP18.67■□□□□ 0.58
CACNA1A-220ENST00000635988 DDX19BQ9UMR2 479 aa18.67■□□□□ 0.58
CACNA1A-220ENST00000635988 AFAP1Q8N556 730 aa18.67■□□□□ 0.58
CACNA1A-220ENST00000635988 GLIPR1L2Q4G1C9 344 aa18.66■□□□□ 0.58
CACNA1A-220ENST00000635988 NSD2O96028 1365 aa18.65■□□□□ 0.58
CACNA1A-220ENST00000635988 TNNT2P45379 298 aaPredicted RBP18.65■□□□□ 0.58
CACNA1A-220ENST00000635988 ZCCHC11Q5TAX3 1644 aaKnown RBP18.65■□□□□ 0.58
CACNA1A-220ENST00000635988 PTMSP20962 102 aa18.65■□□□□ 0.58
CACNA1A-220ENST00000635988 UHRF1BP1LA0JNW5 1464 aa18.65■□□□□ 0.58
CACNA1A-220ENST00000635988 NCOA3Q9Y6Q9 1424 aa18.65■□□□□ 0.58
CACNA1A-220ENST00000635988 ATP7AQ04656 1500 aa18.64■□□□□ 0.58
CACNA1A-220ENST00000635988 SMC5Q8IY18 1101 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 SNX21Q969T3 373 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 NAP1L5Q96NT1 182 aaPredicted RBP18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 ARXQ96QS3 562 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 PANK2Q9BZ23 570 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 CIZ1Q9ULV3 898 aaPredicted RBP18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 KIF3BO15066 747 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 PUS7Q96PZ0 661 aaKnown RBP18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 SLC12A5Q9H2X9 1139 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 GRPEL1Q9HAV7 217 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 ADGRB2O60241 1585 aa18.64■□□□□ 0.57
CACNA1A-220ENST00000635988 RBM25P49756 843 aaKnown RBP18.63■□□□□ 0.57
CACNA1A-220ENST00000635988 SMC4Q9NTJ3 1288 aa18.63■□□□□ 0.57
CACNA1A-220ENST00000635988 INO80Q9ULG1 1556 aaPredicted RBP18.63■□□□□ 0.57
CACNA1A-220ENST00000635988 ZNF692Q9BU19 519 aaPredicted RBP18.62■□□□□ 0.57
CACNA1A-220ENST00000635988 CHD1O14646 1710 aa18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 U2AF1L5P0DN76 240 aaPredicted RBP18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 DDIT3P35638 169 aa18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 U2AF1Q01081 240 aaKnown RBP eCLIP18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 SKOR2Q2VWA4 1001 aaPredicted RBP18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 UGGT1Q9NYU2 1555 aa18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 ZC3H13Q5T200 1668 aaKnown RBP18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 EFCAB6Q5THR3 1501 aa18.61■□□□□ 0.57
CACNA1A-220ENST00000635988 FANCAO15360 1455 aa18.6■□□□□ 0.57
CACNA1A-220ENST00000635988 TRIM27P14373 513 aa18.6■□□□□ 0.57
CACNA1A-220ENST00000635988 ATF7IPQ6VMQ6 1270 aa18.6■□□□□ 0.57
CACNA1A-220ENST00000635988 GBP4Q96PP9 640 aa18.6■□□□□ 0.57
CACNA1A-220ENST00000635988 QRICH2Q9H0J4 1663 aa18.6■□□□□ 0.57
CACNA1A-220ENST00000635988 ITPRIPQ8IWB1 547 aa18.59■□□□□ 0.57
CACNA1A-220ENST00000635988 C14orf93Q9H972 538 aaKnown RBP18.59■□□□□ 0.57
CACNA1A-220ENST00000635988 NOS1P29475 1434 aa18.59■□□□□ 0.57
CACNA1A-220ENST00000635988 IL16Q14005 1332 aa18.59■□□□□ 0.57
CACNA1A-220ENST00000635988 HSP90AA1P07900 732 aaKnown RBP18.58■□□□□ 0.57
CACNA1A-220ENST00000635988 TRAK1Q9UPV9 953 aa18.58■□□□□ 0.57
CACNA1A-220ENST00000635988 MROH1Q8NDA8 1641 aa18.58■□□□□ 0.57
CACNA1A-220ENST00000635988 ABCC11Q96J66 1382 aa18.58■□□□□ 0.56
CACNA1A-220ENST00000635988 ADGRB3O60242 1522 aa18.58■□□□□ 0.56
CACNA1A-220ENST00000635988 ESPNB1AK53 854 aa18.57■□□□□ 0.56
CACNA1A-220ENST00000635988 IPO8O15397 1037 aaKnown RBP18.57■□□□□ 0.56
CACNA1A-220ENST00000635988 RRP9O43818 475 aaKnown RBP18.57■□□□□ 0.56
CACNA1A-220ENST00000635988 EXOSC9Q06265 439 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms