RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 LAMC1P11047 1609 aa13.43□□□□□ -0.26
PDLIM5-223ENST00000627587 PTPRUQ92729 1446 aa13.43□□□□□ -0.26
PDLIM5-223ENST00000627587 CNKSR2Q8WXI2 1034 aa13.42□□□□□ -0.26
PDLIM5-223ENST00000627587 LRRC59Q96AG4 307 aaKnown RBP13.42□□□□□ -0.26
PDLIM5-223ENST00000627587 SETBP1Q9Y6X0 1596 aa13.42□□□□□ -0.26
PDLIM5-223ENST00000627587 RXRBP28702 533 aa13.42□□□□□ -0.26
PDLIM5-223ENST00000627587 EIF4G2P78344 907 aaKnown RBP eCLIP13.4□□□□□ -0.26
PDLIM5-223ENST00000627587 LRP6O75581 1613 aa13.4□□□□□ -0.26
PDLIM5-223ENST00000627587 MYOM2P54296 1465 aa13.4□□□□□ -0.26
PDLIM5-223ENST00000627587 GPRASP1Q5JY77 1395 aa13.4□□□□□ -0.26
PDLIM5-223ENST00000627587 KIAA1210Q9ULL0 1709 aa13.39□□□□□ -0.27
PDLIM5-223ENST00000627587 NRXN1Q9ULB1 1477 aa13.39□□□□□ -0.27
PDLIM5-223ENST00000627587 XRN1Q8IZH2 1706 aaKnown RBP13.39□□□□□ -0.27
PDLIM5-223ENST00000627587 USP47Q96K76 1375 aa13.39□□□□□ -0.27
PDLIM5-223ENST00000627587 NBPF1Q3BBV0 1214 aa13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 UPF1Q92900 1129 aaKnown RBP eCLIP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 RNF216Q9NWF9 866 aaPredicted RBP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 MST1RQ04912 1400 aa13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 NRXN3Q9Y4C0 1643 aa13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 NUTM2BA6NNL0 878 aaPredicted RBP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 NUTM2EB1AL46 878 aaPredicted RBP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 C11orf95C9JLR9 678 aaPredicted RBP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 VGFO15240 615 aaPredicted RBP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 NUTM2AQ8IVF1 878 aaPredicted RBP13.38□□□□□ -0.27
PDLIM5-223ENST00000627587 CDK12Q9NYV4 1490 aaPredicted RBP13.37□□□□□ -0.27
PDLIM5-223ENST00000627587 NEXMIFQ5QGS0 1516 aa13.37□□□□□ -0.27
PDLIM5-223ENST00000627587 ASXL1Q8IXJ9 1541 aa13.37□□□□□ -0.27
PDLIM5-223ENST00000627587 METP08581 1390 aa13.37□□□□□ -0.27
PDLIM5-223ENST00000627587 WASHC2AQ641Q2 1341 aa13.36□□□□□ -0.27
PDLIM5-223ENST00000627587 RPGRIP1LQ68CZ1 1315 aa13.36□□□□□ -0.27
PDLIM5-223ENST00000627587 ROCK2O75116 1388 aaKnown RBP13.36□□□□□ -0.27
PDLIM5-223ENST00000627587 ADGRL3Q9HAR2 1447 aa13.36□□□□□ -0.27
PDLIM5-223ENST00000627587 SETD1AO15047 1707 aaKnown RBP13.35□□□□□ -0.27
PDLIM5-223ENST00000627587 NHSL1Q5SYE7 1610 aa13.35□□□□□ -0.27
PDLIM5-223ENST00000627587 AFF2P51816 1311 aa13.35□□□□□ -0.27
PDLIM5-223ENST00000627587 ADGRF5Q8IZF2 1346 aa13.34□□□□□ -0.27
PDLIM5-223ENST00000627587 STAC3Q96MF2 364 aa13.34□□□□□ -0.27
PDLIM5-223ENST00000627587 CARD11Q9BXL7 1154 aa13.34□□□□□ -0.27
PDLIM5-223ENST00000627587 RBM6P78332 1123 aaKnown RBP13.33□□□□□ -0.28
PDLIM5-223ENST00000627587 DDX10Q13206 875 aaKnown RBP13.33□□□□□ -0.28
PDLIM5-223ENST00000627587 MIER1Q8N108 512 aa13.33□□□□□ -0.28
PDLIM5-223ENST00000627587 QTRT2Q9H974 415 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-223ENST00000627587 PIK3C2GO75747 1445 aa13.32□□□□□ -0.28
PDLIM5-223ENST00000627587 PNPLA6Q8IY17 1366 aa13.31□□□□□ -0.28
PDLIM5-223ENST00000627587 CCDC7Q96M83 1385 aa13.31□□□□□ -0.28
PDLIM5-223ENST00000627587 PTCH1Q13635 1447 aa13.31□□□□□ -0.28
PDLIM5-223ENST00000627587 C1orf167Q5SNV9 1468 aa13.3□□□□□ -0.28
PDLIM5-223ENST00000627587 NGLY1Q96IV0 654 aa13.3□□□□□ -0.28
PDLIM5-223ENST00000627587 C8orf37Q96NL8 207 aa13.3□□□□□ -0.28
PDLIM5-223ENST00000627587 SOS2Q07890 1332 aaPredicted RBP13.29□□□□□ -0.28
PDLIM5-223ENST00000627587 KIF7Q2M1P5 1343 aa13.29□□□□□ -0.28
PDLIM5-223ENST00000627587 ADGRB1O14514 1584 aa13.29□□□□□ -0.28
PDLIM5-223ENST00000627587 ST20-MTHFSA0A0A6YYL1 179 aa13.29□□□□□ -0.28
PDLIM5-223ENST00000627587 NALCNQ8IZF0 1738 aa13.28□□□□□ -0.28
PDLIM5-223ENST00000627587 CFAP70Q5T0N1 1121 aa13.27□□□□□ -0.28
PDLIM5-223ENST00000627587 DDX17Q92841 729 aaKnown RBP13.27□□□□□ -0.28
PDLIM5-223ENST00000627587 TESK2Q96S53 571 aa13.26□□□□□ -0.29
PDLIM5-223ENST00000627587 ROBO2Q9HCK4 1378 aa13.25□□□□□ -0.29
PDLIM5-223ENST00000627587 ADAMTS2O95450 1211 aa13.25□□□□□ -0.29
PDLIM5-223ENST00000627587 ORAI2Q96SN7 254 aa13.25□□□□□ -0.29
PDLIM5-223ENST00000627587 TRPC5Q9UL62 973 aaPredicted RBP13.25□□□□□ -0.29
PDLIM5-223ENST00000627587 FNBP4Q8N3X1 1017 aaPredicted RBP13.24□□□□□ -0.29
PDLIM5-223ENST00000627587 USP21Q9UK80 565 aa13.24□□□□□ -0.29
PDLIM5-223ENST00000627587 NPHP3Q7Z494 1330 aa13.24□□□□□ -0.29
PDLIM5-223ENST00000627587 C14orf93Q9H972 538 aaKnown RBP13.23□□□□□ -0.29
PDLIM5-223ENST00000627587 LRPPRCP42704 1394 aaKnown RBP13.23□□□□□ -0.29
PDLIM5-223ENST00000627587 RGS12O14924 1447 aa13.23□□□□□ -0.29
PDLIM5-223ENST00000627587 C1QBPQ07021 282 aaKnown RBP13.23□□□□□ -0.29
PDLIM5-223ENST00000627587 ATAD2Q6PL18 1390 aa13.22□□□□□ -0.29
PDLIM5-223ENST00000627587 ARHGEF28Q8N1W1 1705 aaKnown RBP13.22□□□□□ -0.29
PDLIM5-223ENST00000627587 ESCO1Q5FWF5 840 aa13.21□□□□□ -0.29
PDLIM5-223ENST00000627587 CCDC125Q86Z20 511 aa13.21□□□□□ -0.3
PDLIM5-223ENST00000627587 COL22A1Q8NFW1 1626 aaPredicted RBP13.2□□□□□ -0.3
PDLIM5-223ENST00000627587 SIRT1Q96EB6 747 aa13.19□□□□□ -0.3
PDLIM5-223ENST00000627587 CDC42BPGQ6DT37 1551 aa13.19□□□□□ -0.3
PDLIM5-223ENST00000627587 QRICH2Q9H0J4 1663 aa13.19□□□□□ -0.3
PDLIM5-223ENST00000627587 MYOM1P52179 1685 aa13.18□□□□□ -0.3
PDLIM5-223ENST00000627587 ATRNO75882 1429 aa13.18□□□□□ -0.3
PDLIM5-223ENST00000627587 TMEM132EQ6IEE7 984 aa13.18□□□□□ -0.3
PDLIM5-223ENST00000627587 ABCC11Q96J66 1382 aa13.18□□□□□ -0.3
PDLIM5-223ENST00000627587 TECPR2O15040 1411 aa13.17□□□□□ -0.3
PDLIM5-223ENST00000627587 FOXO3O43524 673 aa13.16□□□□□ -0.3
PDLIM5-223ENST00000627587 EIF3AQ14152 1382 aaKnown RBP13.15□□□□□ -0.3
PDLIM5-223ENST00000627587 STK26Q9P289 416 aa13.15□□□□□ -0.3
PDLIM5-223ENST00000627587 PXDNQ92626 1479 aa13.15□□□□□ -0.3
PDLIM5-223ENST00000627587 WAPLQ7Z5K2 1190 aa13.14□□□□□ -0.31
PDLIM5-223ENST00000627587 GJD4Q96KN9 370 aaPredicted RBP13.14□□□□□ -0.31
PDLIM5-223ENST00000627587 SBNO2Q9Y2G9 1366 aa13.14□□□□□ -0.31
PDLIM5-223ENST00000627587 ZRANB1Q9UGI0 708 aa13.14□□□□□ -0.31
PDLIM5-223ENST00000627587 BCL9LQ86UU0 1499 aa13.13□□□□□ -0.31
PDLIM5-223ENST00000627587 PSME1Q06323 249 aa13.13□□□□□ -0.31
PDLIM5-223ENST00000627587 MARF1Q9Y4F3 1742 aaKnown RBP13.13□□□□□ -0.31
PDLIM5-223ENST00000627587 SPATA31A3Q5VYP0 1347 aa13.13□□□□□ -0.31
PDLIM5-223ENST00000627587 POLR3GLQ9BT43 218 aa13.12□□□□□ -0.31
PDLIM5-223ENST00000627587 TRAK1Q9UPV9 953 aa13.12□□□□□ -0.31
PDLIM5-223ENST00000627587 KNDC1Q76NI1 1749 aa13.12□□□□□ -0.31
PDLIM5-223ENST00000627587 TMF1P82094 1093 aa13.12□□□□□ -0.31
PDLIM5-223ENST00000627587 KRT28Q7Z3Y7 464 aa13.12□□□□□ -0.31
PDLIM5-223ENST00000627587 UNC5CLQ8IV45 518 aa13.12□□□□□ -0.31
PDLIM5-223ENST00000627587 YTHDC2Q9H6S0 1430 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms