RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	LAMC1	P11047	1609 aa		13.43	□□□□□ -0.26
PDLIM5-223	ENST00000627587	PTPRU	Q92729	1446 aa		13.43	□□□□□ -0.26
PDLIM5-223	ENST00000627587	CNKSR2	Q8WXI2	1034 aa		13.42	□□□□□ -0.26
PDLIM5-223	ENST00000627587	LRRC59	Q96AG4	307 aa	Known RBP	13.42	□□□□□ -0.26
PDLIM5-223	ENST00000627587	SETBP1	Q9Y6X0	1596 aa		13.42	□□□□□ -0.26
PDLIM5-223	ENST00000627587	RXRB	P28702	533 aa		13.42	□□□□□ -0.26
PDLIM5-223	ENST00000627587	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
PDLIM5-223	ENST00000627587	LRP6	O75581	1613 aa		13.4	□□□□□ -0.26
PDLIM5-223	ENST00000627587	MYOM2	P54296	1465 aa		13.4	□□□□□ -0.26
PDLIM5-223	ENST00000627587	GPRASP1	Q5JY77	1395 aa		13.4	□□□□□ -0.26
PDLIM5-223	ENST00000627587	KIAA1210	Q9ULL0	1709 aa		13.39	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NRXN1	Q9ULB1	1477 aa		13.39	□□□□□ -0.27
PDLIM5-223	ENST00000627587	XRN1	Q8IZH2	1706 aa	Known RBP	13.39	□□□□□ -0.27
PDLIM5-223	ENST00000627587	USP47	Q96K76	1375 aa		13.39	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NBPF1	Q3BBV0	1214 aa		13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	RNF216	Q9NWF9	866 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	MST1R	Q04912	1400 aa		13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NRXN3	Q9Y4C0	1643 aa		13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NUTM2E	B1AL46	878 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	C11orf95	C9JLR9	678 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	VGF	O15240	615 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-223	ENST00000627587	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.37	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NEXMIF	Q5QGS0	1516 aa		13.37	□□□□□ -0.27
PDLIM5-223	ENST00000627587	ASXL1	Q8IXJ9	1541 aa		13.37	□□□□□ -0.27
PDLIM5-223	ENST00000627587	MET	P08581	1390 aa		13.37	□□□□□ -0.27
PDLIM5-223	ENST00000627587	WASHC2A	Q641Q2	1341 aa		13.36	□□□□□ -0.27
PDLIM5-223	ENST00000627587	RPGRIP1L	Q68CZ1	1315 aa		13.36	□□□□□ -0.27
PDLIM5-223	ENST00000627587	ROCK2	O75116	1388 aa	Known RBP	13.36	□□□□□ -0.27
PDLIM5-223	ENST00000627587	ADGRL3	Q9HAR2	1447 aa		13.36	□□□□□ -0.27
PDLIM5-223	ENST00000627587	SETD1A	O15047	1707 aa	Known RBP	13.35	□□□□□ -0.27
PDLIM5-223	ENST00000627587	NHSL1	Q5SYE7	1610 aa		13.35	□□□□□ -0.27
PDLIM5-223	ENST00000627587	AFF2	P51816	1311 aa		13.35	□□□□□ -0.27
PDLIM5-223	ENST00000627587	ADGRF5	Q8IZF2	1346 aa		13.34	□□□□□ -0.27
PDLIM5-223	ENST00000627587	STAC3	Q96MF2	364 aa		13.34	□□□□□ -0.27
PDLIM5-223	ENST00000627587	CARD11	Q9BXL7	1154 aa		13.34	□□□□□ -0.27
PDLIM5-223	ENST00000627587	RBM6	P78332	1123 aa	Known RBP	13.33	□□□□□ -0.28
PDLIM5-223	ENST00000627587	DDX10	Q13206	875 aa	Known RBP	13.33	□□□□□ -0.28
PDLIM5-223	ENST00000627587	MIER1	Q8N108	512 aa		13.33	□□□□□ -0.28
PDLIM5-223	ENST00000627587	QTRT2	Q9H974	415 aa	Known RBP	13.32	□□□□□ -0.28
PDLIM5-223	ENST00000627587	PIK3C2G	O75747	1445 aa		13.32	□□□□□ -0.28
PDLIM5-223	ENST00000627587	PNPLA6	Q8IY17	1366 aa		13.31	□□□□□ -0.28
PDLIM5-223	ENST00000627587	CCDC7	Q96M83	1385 aa		13.31	□□□□□ -0.28
PDLIM5-223	ENST00000627587	PTCH1	Q13635	1447 aa		13.31	□□□□□ -0.28
PDLIM5-223	ENST00000627587	C1orf167	Q5SNV9	1468 aa		13.3	□□□□□ -0.28
PDLIM5-223	ENST00000627587	NGLY1	Q96IV0	654 aa		13.3	□□□□□ -0.28
PDLIM5-223	ENST00000627587	C8orf37	Q96NL8	207 aa		13.3	□□□□□ -0.28
PDLIM5-223	ENST00000627587	SOS2	Q07890	1332 aa	Predicted RBP	13.29	□□□□□ -0.28
PDLIM5-223	ENST00000627587	KIF7	Q2M1P5	1343 aa		13.29	□□□□□ -0.28
PDLIM5-223	ENST00000627587	ADGRB1	O14514	1584 aa		13.29	□□□□□ -0.28
PDLIM5-223	ENST00000627587	ST20-MTHFS	A0A0A6YYL1	179 aa		13.29	□□□□□ -0.28
PDLIM5-223	ENST00000627587	NALCN	Q8IZF0	1738 aa		13.28	□□□□□ -0.28
PDLIM5-223	ENST00000627587	CFAP70	Q5T0N1	1121 aa		13.27	□□□□□ -0.28
PDLIM5-223	ENST00000627587	DDX17	Q92841	729 aa	Known RBP	13.27	□□□□□ -0.28
PDLIM5-223	ENST00000627587	TESK2	Q96S53	571 aa		13.26	□□□□□ -0.29
PDLIM5-223	ENST00000627587	ROBO2	Q9HCK4	1378 aa		13.25	□□□□□ -0.29
PDLIM5-223	ENST00000627587	ADAMTS2	O95450	1211 aa		13.25	□□□□□ -0.29
PDLIM5-223	ENST00000627587	ORAI2	Q96SN7	254 aa		13.25	□□□□□ -0.29
PDLIM5-223	ENST00000627587	TRPC5	Q9UL62	973 aa	Predicted RBP	13.25	□□□□□ -0.29
PDLIM5-223	ENST00000627587	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.24	□□□□□ -0.29
PDLIM5-223	ENST00000627587	USP21	Q9UK80	565 aa		13.24	□□□□□ -0.29
PDLIM5-223	ENST00000627587	NPHP3	Q7Z494	1330 aa		13.24	□□□□□ -0.29
PDLIM5-223	ENST00000627587	C14orf93	Q9H972	538 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-223	ENST00000627587	LRPPRC	P42704	1394 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-223	ENST00000627587	RGS12	O14924	1447 aa		13.23	□□□□□ -0.29
PDLIM5-223	ENST00000627587	C1QBP	Q07021	282 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-223	ENST00000627587	ATAD2	Q6PL18	1390 aa		13.22	□□□□□ -0.29
PDLIM5-223	ENST00000627587	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.22	□□□□□ -0.29
PDLIM5-223	ENST00000627587	ESCO1	Q5FWF5	840 aa		13.21	□□□□□ -0.29
PDLIM5-223	ENST00000627587	CCDC125	Q86Z20	511 aa		13.21	□□□□□ -0.3
PDLIM5-223	ENST00000627587	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.2	□□□□□ -0.3
PDLIM5-223	ENST00000627587	SIRT1	Q96EB6	747 aa		13.19	□□□□□ -0.3
PDLIM5-223	ENST00000627587	CDC42BPG	Q6DT37	1551 aa		13.19	□□□□□ -0.3
PDLIM5-223	ENST00000627587	QRICH2	Q9H0J4	1663 aa		13.19	□□□□□ -0.3
PDLIM5-223	ENST00000627587	MYOM1	P52179	1685 aa		13.18	□□□□□ -0.3
PDLIM5-223	ENST00000627587	ATRN	O75882	1429 aa		13.18	□□□□□ -0.3
PDLIM5-223	ENST00000627587	TMEM132E	Q6IEE7	984 aa		13.18	□□□□□ -0.3
PDLIM5-223	ENST00000627587	ABCC11	Q96J66	1382 aa		13.18	□□□□□ -0.3
PDLIM5-223	ENST00000627587	TECPR2	O15040	1411 aa		13.17	□□□□□ -0.3
PDLIM5-223	ENST00000627587	FOXO3	O43524	673 aa		13.16	□□□□□ -0.3
PDLIM5-223	ENST00000627587	EIF3A	Q14152	1382 aa	Known RBP	13.15	□□□□□ -0.3
PDLIM5-223	ENST00000627587	STK26	Q9P289	416 aa		13.15	□□□□□ -0.3
PDLIM5-223	ENST00000627587	PXDN	Q92626	1479 aa		13.15	□□□□□ -0.3
PDLIM5-223	ENST00000627587	WAPL	Q7Z5K2	1190 aa		13.14	□□□□□ -0.31
PDLIM5-223	ENST00000627587	GJD4	Q96KN9	370 aa	Predicted RBP	13.14	□□□□□ -0.31
PDLIM5-223	ENST00000627587	SBNO2	Q9Y2G9	1366 aa		13.14	□□□□□ -0.31
PDLIM5-223	ENST00000627587	ZRANB1	Q9UGI0	708 aa		13.14	□□□□□ -0.31
PDLIM5-223	ENST00000627587	BCL9L	Q86UU0	1499 aa		13.13	□□□□□ -0.31
PDLIM5-223	ENST00000627587	PSME1	Q06323	249 aa		13.13	□□□□□ -0.31
PDLIM5-223	ENST00000627587	MARF1	Q9Y4F3	1742 aa	Known RBP	13.13	□□□□□ -0.31
PDLIM5-223	ENST00000627587	SPATA31A3	Q5VYP0	1347 aa		13.13	□□□□□ -0.31
PDLIM5-223	ENST00000627587	POLR3GL	Q9BT43	218 aa		13.12	□□□□□ -0.31
PDLIM5-223	ENST00000627587	TRAK1	Q9UPV9	953 aa		13.12	□□□□□ -0.31
PDLIM5-223	ENST00000627587	KNDC1	Q76NI1	1749 aa		13.12	□□□□□ -0.31
PDLIM5-223	ENST00000627587	TMF1	P82094	1093 aa		13.12	□□□□□ -0.31
PDLIM5-223	ENST00000627587	KRT28	Q7Z3Y7	464 aa		13.12	□□□□□ -0.31
PDLIM5-223	ENST00000627587	UNC5CL	Q8IV45	518 aa		13.12	□□□□□ -0.31
PDLIM5-223	ENST00000627587	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms