RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 ADAMTS13Q76LX8 1427 aa29.11■■■□□ 2.25
SPAST-204ENST00000621856 CABP2Q9NPB3 220 aa29.09■■■□□ 2.25
SPAST-204ENST00000621856 AMER1Q5JTC6 1135 aaPredicted RBP29.08■■■□□ 2.25
SPAST-204ENST00000621856 SRPK2P78362 688 aaKnown RBP29.08■■■□□ 2.25
SPAST-204ENST00000621856 HNRNPUQ00839 825 aaKnown RBP eCLIP29.08■■■□□ 2.25
SPAST-204ENST00000621856 NLRP13Q86W25 1043 aa29.08■■■□□ 2.25
SPAST-204ENST00000621856 SLC12A5Q9H2X9 1139 aa29.07■■■□□ 2.24
SPAST-204ENST00000621856 WAPLQ7Z5K2 1190 aa29.06■■■□□ 2.24
SPAST-204ENST00000621856 NPC1L1Q9UHC9 1359 aa29.06■■■□□ 2.24
SPAST-204ENST00000621856 PLEKHH1Q9ULM0 1364 aa29.05■■■□□ 2.24
SPAST-204ENST00000621856 ZNF142P52746 1687 aaPredicted RBP29.05■■■□□ 2.24
SPAST-204ENST00000621856 CARD14Q9BXL6 1004 aa29.05■■■□□ 2.24
SPAST-204ENST00000621856 TECPR2O15040 1411 aa29.04■■■□□ 2.24
SPAST-204ENST00000621856 CPS1P31327 1500 aa29.04■■■□□ 2.24
SPAST-204ENST00000621856 ATAD2Q6PL18 1390 aa29.03■■■□□ 2.24
SPAST-204ENST00000621856 MED14O60244 1454 aa29.02■■■□□ 2.24
SPAST-204ENST00000621856 FAM135BQ49AJ0 1406 aa29.02■■■□□ 2.24
SPAST-204ENST00000621856 SETD1BQ9UPS6 1966 aaKnown RBP29.02■■■□□ 2.24
SPAST-204ENST00000621856 SIRT1Q96EB6 747 aa29.01■■■□□ 2.23
SPAST-204ENST00000621856 NSD3Q9BZ95 1437 aa29.01■■■□□ 2.23
SPAST-204ENST00000621856 NINLQ9Y2I6 1382 aa29.01■■■□□ 2.23
SPAST-204ENST00000621856 SLC26A8Q96RN1 970 aa29■■■□□ 2.23
SPAST-204ENST00000621856 CDK19Q9BWU1 502 aa29■■■□□ 2.23
SPAST-204ENST00000621856 PNISRQ8TF01 805 aaKnown RBP29■■■□□ 2.23
SPAST-204ENST00000621856 DIP2AQ14689 1571 aa28.98■■■□□ 2.23
SPAST-204ENST00000621856 ANKRD36BQ8N2N9 1353 aa28.98■■■□□ 2.23
SPAST-204ENST00000621856 SCAF1Q9H7N4 1312 aaKnown RBP28.98■■■□□ 2.23
SPAST-204ENST00000621856 TBX22Q9Y458 520 aa28.96■■■□□ 2.23
SPAST-204ENST00000621856 USP32Q8NFA0 1604 aa28.95■■■□□ 2.23
SPAST-204ENST00000621856 PPP2R1AP30153 589 aa28.94■■■□□ 2.22
SPAST-204ENST00000621856 GTF3C3Q9Y5Q9 886 aa28.94■■■□□ 2.22
SPAST-204ENST00000621856 ROBO2Q9HCK4 1378 aa28.92■■■□□ 2.22
SPAST-204ENST00000621856 PTPRUQ92729 1446 aa28.91■■■□□ 2.22
SPAST-204ENST00000621856 ANKLE2Q86XL3 938 aa28.9■■■□□ 2.22
SPAST-204ENST00000621856 WASLO00401 505 aaPredicted RBP28.89■■■□□ 2.22
SPAST-204ENST00000621856 TERF2IPQ9NYB0 399 aa28.89■■■□□ 2.21
SPAST-204ENST00000621856 CGNL1Q0VF96 1302 aa28.88■■■□□ 2.21
SPAST-204ENST00000621856 A0A1W2PP64 1363 aa28.88■■■□□ 2.21
SPAST-204ENST00000621856 AMOTL2Q9Y2J4 779 aa28.87■■■□□ 2.21
SPAST-204ENST00000621856 HDGFL2Q7Z4V5 671 aaPredicted RBP28.85■■■□□ 2.21
SPAST-204ENST00000621856 MORC1Q86VD1 984 aa28.84■■■□□ 2.21
SPAST-204ENST00000621856 CABP1Q9NZU7 370 aa28.84■■■□□ 2.21
SPAST-204ENST00000621856 ZBED9Q6R2W3 1325 aa28.84■■■□□ 2.21
SPAST-204ENST00000621856 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.83■■■□□ 2.21
SPAST-204ENST00000621856 ADGRB2O60241 1585 aa28.83■■■□□ 2.21
SPAST-204ENST00000621856 CD163L1Q9NR16 1453 aa28.83■■■□□ 2.21
SPAST-204ENST00000621856 PTCH1Q13635 1447 aa28.82■■■□□ 2.2
SPAST-204ENST00000621856 NSD2O96028 1365 aa28.82■■■□□ 2.2
SPAST-204ENST00000621856 XRN1Q8IZH2 1706 aaKnown RBP28.81■■■□□ 2.2
SPAST-204ENST00000621856 PIK3R4Q99570 1358 aa28.8■■■□□ 2.2
SPAST-204ENST00000621856 ATP7BP35670 1465 aa28.8■■■□□ 2.2
SPAST-204ENST00000621856 PPIP5K1Q6PFW1 1433 aa28.77■■■□□ 2.2
SPAST-204ENST00000621856 NUDT16Q96DE0 195 aaKnown RBP28.77■■■□□ 2.2
SPAST-204ENST00000621856 TNNT2P45379 298 aaPredicted RBP28.73■■■□□ 2.19
SPAST-204ENST00000621856 WDR43Q15061 677 aaKnown RBP eCLIP28.73■■■□□ 2.19
SPAST-204ENST00000621856 ANKRD26Q9UPS8 1709 aa28.73■■■□□ 2.19
SPAST-204ENST00000621856 INSRP06213 1382 aa28.72■■■□□ 2.19
SPAST-204ENST00000621856 CCDC61Q9Y6R9 512 aa28.72■■■□□ 2.19
SPAST-204ENST00000621856 NPHP4O75161 1426 aaPredicted RBP28.72■■■□□ 2.19
SPAST-204ENST00000621856 KIF20BQ96Q89 1820 aa28.72■■■□□ 2.19
SPAST-204ENST00000621856 CHD2O14647 1828 aaKnown RBP28.71■■■□□ 2.19
SPAST-204ENST00000621856 CDC42BPGQ6DT37 1551 aa28.71■■■□□ 2.19
SPAST-204ENST00000621856 KCNA6P17658 529 aa28.71■■■□□ 2.19
SPAST-204ENST00000621856 ITSN1Q15811 1721 aa28.7■■■□□ 2.18
SPAST-204ENST00000621856 PRR36Q9H6K5 1346 aa28.69■■■□□ 2.18
SPAST-204ENST00000621856 BLMP54132 1417 aaPredicted RBP28.69■■■□□ 2.18
SPAST-204ENST00000621856 GGNBP2Q9H3C7 697 aa28.69■■■□□ 2.18
SPAST-204ENST00000621856 CPSF1Q10570 1443 aaKnown RBP28.68■■■□□ 2.18
SPAST-204ENST00000621856 SENP3-EIF4A1A0A087X0R7 540 aa28.67■■■□□ 2.18
SPAST-204ENST00000621856 NCKAP5LQ9HCH0 1330 aa28.67■■■□□ 2.18
SPAST-204ENST00000621856 TOPAZ1Q8N9V7 1692 aa28.67■■■□□ 2.18
SPAST-204ENST00000621856 FYB1O15117 783 aa28.66■■■□□ 2.18
SPAST-204ENST00000621856 ADAMTS8Q9UP79 889 aa28.66■■■□□ 2.18
SPAST-204ENST00000621856 AKAP12Q02952 1782 aa28.66■■■□□ 2.18
SPAST-204ENST00000621856 POLR3AO14802 1390 aaPredicted RBP28.66■■■□□ 2.18
SPAST-204ENST00000621856 MON2Q7Z3U7 1717 aa28.65■■■□□ 2.18
SPAST-204ENST00000621856 EDC4Q6P2E9 1401 aaKnown RBP28.64■■■□□ 2.18
SPAST-204ENST00000621856 NUTM2FA1L443 756 aa28.63■■■□□ 2.17
SPAST-204ENST00000621856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.63■■■□□ 2.17
SPAST-204ENST00000621856 MTHFSP49914 203 aa28.6■■■□□ 2.17
SPAST-204ENST00000621856 CFAP53Q96M91 514 aa28.6■■■□□ 2.17
SPAST-204ENST00000621856 ZNF692Q9BU19 519 aaPredicted RBP28.6■■■□□ 2.17
SPAST-204ENST00000621856 PLEKHG3A1L390 1219 aa28.56■■■□□ 2.16
SPAST-204ENST00000621856 SALL2Q9Y467 1007 aaPredicted RBP28.56■■■□□ 2.16
SPAST-204ENST00000621856 SHPRHQ149N8 1683 aa28.56■■■□□ 2.16
SPAST-204ENST00000621856 NALCNQ8IZF0 1738 aa28.54■■■□□ 2.16
SPAST-204ENST00000621856 FMN2Q9NZ56 1722 aa28.54■■■□□ 2.16
SPAST-204ENST00000621856 RGPD8O14715 1765 aaPredicted RBP28.54■■■□□ 2.16
SPAST-204ENST00000621856 ACEP12821 1306 aa28.54■■■□□ 2.16
SPAST-204ENST00000621856 NKTRP30414 1462 aaKnown RBP28.54■■■□□ 2.16
SPAST-204ENST00000621856 SMG6Q86US8 1419 aaKnown RBP28.53■■■□□ 2.16
SPAST-204ENST00000621856 ANKARQ7Z5J8 1434 aa28.52■■■□□ 2.16
SPAST-204ENST00000621856 NME9Q86XW9 330 aa28.52■■■□□ 2.16
SPAST-204ENST00000621856 KDM4FA0A1W2PPD8 638 aa28.51■■■□□ 2.15
SPAST-204ENST00000621856 NWD1Q149M9 1564 aa28.51■■■□□ 2.15
SPAST-204ENST00000621856 NEFLP07196 543 aa28.5■■■□□ 2.15
SPAST-204ENST00000621856 NRKQ7Z2Y5 1582 aa28.5■■■□□ 2.15
SPAST-204ENST00000621856 NUDCQ9Y266 331 aa28.49■■■□□ 2.15
SPAST-204ENST00000621856 CCDC146Q8IYE0 955 aa28.48■■■□□ 2.15
SPAST-204ENST00000621856 SUPT16HQ9Y5B9 1047 aaKnown RBP28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms