RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 CARD14Q9BXL6 1004 aa23.66■■□□□ 1.38
CNOT3-209ENST00000617930 TSHZ2Q9NRE2 1034 aa23.66■■□□□ 1.38
CNOT3-209ENST00000617930 KNSTRNQ9Y448 316 aa23.66■■□□□ 1.38
CNOT3-209ENST00000617930 PLEKHG1Q9ULL1 1385 aa23.65■■□□□ 1.38
CNOT3-209ENST00000617930 TXNDC2Q86VQ3 553 aa23.64■■□□□ 1.38
CNOT3-209ENST00000617930 MED14O60244 1454 aa23.64■■□□□ 1.37
CNOT3-209ENST00000617930 PLEKHH1Q9ULM0 1364 aa23.63■■□□□ 1.37
CNOT3-209ENST00000617930 SLC24A1O60721 1099 aa23.62■■□□□ 1.37
CNOT3-209ENST00000617930 PRAM1Q96QH2 718 aa23.62■■□□□ 1.37
CNOT3-209ENST00000617930 DLC1Q96QB1 1528 aa23.6■■□□□ 1.37
CNOT3-209ENST00000617930 SETD1BQ9UPS6 1966 aaKnown RBP23.6■■□□□ 1.37
CNOT3-209ENST00000617930 THEMISQ8N1K5 641 aaPredicted RBP23.6■■□□□ 1.37
CNOT3-209ENST00000617930 ABCC11Q96J66 1382 aa23.59■■□□□ 1.37
CNOT3-209ENST00000617930 PPP2R1AP30153 589 aa23.59■■□□□ 1.37
CNOT3-209ENST00000617930 HDGFP51858 240 aaKnown RBP23.59■■□□□ 1.37
CNOT3-209ENST00000617930 WAPLQ7Z5K2 1190 aa23.59■■□□□ 1.37
CNOT3-209ENST00000617930 PTPRUQ92729 1446 aa23.58■■□□□ 1.37
CNOT3-209ENST00000617930 KNDC1Q76NI1 1749 aa23.58■■□□□ 1.37
CNOT3-209ENST00000617930 SLC26A8Q96RN1 970 aa23.58■■□□□ 1.37
CNOT3-209ENST00000617930 NPC1L1Q9UHC9 1359 aa23.56■■□□□ 1.36
CNOT3-209ENST00000617930 SLC12A5Q9H2X9 1139 aa23.56■■□□□ 1.36
CNOT3-209ENST00000617930 MINK1Q8N4C8 1332 aaPredicted RBP23.56■■□□□ 1.36
CNOT3-209ENST00000617930 TECPR2O15040 1411 aa23.55■■□□□ 1.36
CNOT3-209ENST00000617930 IRX6P78412 446 aaPredicted RBP23.54■■□□□ 1.36
CNOT3-209ENST00000617930 EID1Q9Y6B2 187 aa23.54■■□□□ 1.36
CNOT3-209ENST00000617930 CPS1P31327 1500 aa23.54■■□□□ 1.36
CNOT3-209ENST00000617930 SMG6Q86US8 1419 aaKnown RBP23.53■■□□□ 1.36
CNOT3-209ENST00000617930 ROBO2Q9HCK4 1378 aa23.52■■□□□ 1.36
CNOT3-209ENST00000617930 CABP2Q9NPB3 220 aa23.52■■□□□ 1.36
CNOT3-209ENST00000617930 POGKQ9P215 609 aa23.52■■□□□ 1.36
CNOT3-209ENST00000617930 EVC2Q86UK5 1308 aa23.49■■□□□ 1.35
CNOT3-209ENST00000617930 KDM4FA0A1W2PPD8 638 aa23.49■■□□□ 1.35
CNOT3-209ENST00000617930 BLMP54132 1417 aaPredicted RBP23.47■■□□□ 1.35
CNOT3-209ENST00000617930 ADAMTS8Q9UP79 889 aa23.47■■□□□ 1.35
CNOT3-209ENST00000617930 NUDCQ9Y266 331 aa23.47■■□□□ 1.35
CNOT3-209ENST00000617930 TBX22Q9Y458 520 aa23.47■■□□□ 1.35
CNOT3-209ENST00000617930 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.46■■□□□ 1.35
CNOT3-209ENST00000617930 SALL2Q9Y467 1007 aaPredicted RBP23.46■■□□□ 1.35
CNOT3-209ENST00000617930 FAM135BQ49AJ0 1406 aa23.46■■□□□ 1.35
CNOT3-209ENST00000617930 DIP2AQ14689 1571 aa23.46■■□□□ 1.35
CNOT3-209ENST00000617930 NSD3Q9BZ95 1437 aa23.45■■□□□ 1.34
CNOT3-209ENST00000617930 PUS7Q96PZ0 661 aaKnown RBP23.45■■□□□ 1.34
CNOT3-209ENST00000617930 XRN1Q8IZH2 1706 aaKnown RBP23.44■■□□□ 1.34
CNOT3-209ENST00000617930 INSRP06213 1382 aa23.44■■□□□ 1.34
CNOT3-209ENST00000617930 CDK19Q9BWU1 502 aa23.43■■□□□ 1.34
CNOT3-209ENST00000617930 SIRT1Q96EB6 747 aa23.42■■□□□ 1.34
CNOT3-209ENST00000617930 SRPK2P78362 688 aaKnown RBP23.41■■□□□ 1.34
CNOT3-209ENST00000617930 ANKLE2Q86XL3 938 aa23.41■■□□□ 1.34
CNOT3-209ENST00000617930 AMOTL2Q9Y2J4 779 aa23.41■■□□□ 1.34
CNOT3-209ENST00000617930 CD163L1Q9NR16 1453 aa23.41■■□□□ 1.34
CNOT3-209ENST00000617930 CDCA7LQ96GN5 454 aa23.37■■□□□ 1.33
CNOT3-209ENST00000617930 RNF123Q5XPI4 1314 aa23.37■■□□□ 1.33
CNOT3-209ENST00000617930 NCKAP5LQ9HCH0 1330 aa23.37■■□□□ 1.33
CNOT3-209ENST00000617930 ANKRD36BQ8N2N9 1353 aa23.36■■□□□ 1.33
CNOT3-209ENST00000617930 PTCH1Q13635 1447 aa23.36■■□□□ 1.33
CNOT3-209ENST00000617930 ADGRB2O60241 1585 aa23.35■■□□□ 1.33
CNOT3-209ENST00000617930 A0A1W2PP64 1363 aa23.35■■□□□ 1.33
CNOT3-209ENST00000617930 CHD2O14647 1828 aaKnown RBP23.35■■□□□ 1.33
CNOT3-209ENST00000617930 WASLO00401 505 aaPredicted RBP23.35■■□□□ 1.33
CNOT3-209ENST00000617930 KCNA6P17658 529 aa23.35■■□□□ 1.33
CNOT3-209ENST00000617930 NPHP4O75161 1426 aaPredicted RBP23.35■■□□□ 1.33
CNOT3-209ENST00000617930 ATAD2Q6PL18 1390 aa23.34■■□□□ 1.33
CNOT3-209ENST00000617930 PRR36Q9H6K5 1346 aa23.33■■□□□ 1.32
CNOT3-209ENST00000617930 TNNT2P45379 298 aaPredicted RBP23.32■■□□□ 1.32
CNOT3-209ENST00000617930 WDR43Q15061 677 aaKnown RBP eCLIP23.32■■□□□ 1.32
CNOT3-209ENST00000617930 USP32Q8NFA0 1604 aa23.31■■□□□ 1.32
CNOT3-209ENST00000617930 MORC1Q86VD1 984 aa23.31■■□□□ 1.32
CNOT3-209ENST00000617930 CABP1Q9NZU7 370 aa23.31■■□□□ 1.32
CNOT3-209ENST00000617930 PIK3R4Q99570 1358 aa23.31■■□□□ 1.32
CNOT3-209ENST00000617930 ATP7BP35670 1465 aa23.31■■□□□ 1.32
CNOT3-209ENST00000617930 HSPA2P54652 639 aa23.3■■□□□ 1.32
CNOT3-209ENST00000617930 CGNL1Q0VF96 1302 aa23.29■■□□□ 1.32
CNOT3-209ENST00000617930 PDE3BQ13370 1112 aa23.28■■□□□ 1.32
CNOT3-209ENST00000617930 NINLQ9Y2I6 1382 aa23.28■■□□□ 1.32
CNOT3-209ENST00000617930 POLR3AO14802 1390 aaPredicted RBP23.27■■□□□ 1.32
CNOT3-209ENST00000617930 CCDC146Q8IYE0 955 aa23.27■■□□□ 1.32
CNOT3-209ENST00000617930 ERICH6BQ5W0A0 696 aa23.26■■□□□ 1.31
CNOT3-209ENST00000617930 LMTK3Q96Q04 1460 aa23.26■■□□□ 1.31
CNOT3-209ENST00000617930 TOPAZ1Q8N9V7 1692 aa23.25■■□□□ 1.31
CNOT3-209ENST00000617930 ZNF521Q96K83 1311 aa23.25■■□□□ 1.31
CNOT3-209ENST00000617930 NUDT16Q96DE0 195 aaKnown RBP23.25■■□□□ 1.31
CNOT3-209ENST00000617930 RBM33Q96EV2 1170 aaKnown RBP23.25■■□□□ 1.31
CNOT3-209ENST00000617930 PPIP5K1Q6PFW1 1433 aa23.25■■□□□ 1.31
CNOT3-209ENST00000617930 NUTM2FA1L443 756 aa23.24■■□□□ 1.31
CNOT3-209ENST00000617930 NALCNQ8IZF0 1738 aa23.24■■□□□ 1.31
CNOT3-209ENST00000617930 NKTRP30414 1462 aaKnown RBP23.22■■□□□ 1.31
CNOT3-209ENST00000617930 CPSF1Q10570 1443 aaKnown RBP23.22■■□□□ 1.31
CNOT3-209ENST00000617930 MTHFSP49914 203 aa23.22■■□□□ 1.31
CNOT3-209ENST00000617930 RBM19Q9Y4C8 960 aaKnown RBP23.22■■□□□ 1.31
CNOT3-209ENST00000617930 RGPD8O14715 1765 aaPredicted RBP23.22■■□□□ 1.31
CNOT3-209ENST00000617930 PPP4R2Q9NY27 417 aa23.21■■□□□ 1.31
CNOT3-209ENST00000617930 CDC42BPGQ6DT37 1551 aa23.21■■□□□ 1.31
CNOT3-209ENST00000617930 FYB1O15117 783 aa23.21■■□□□ 1.31
CNOT3-209ENST00000617930 GGNBP2Q9H3C7 697 aa23.21■■□□□ 1.31
CNOT3-209ENST00000617930 NWD1Q149M9 1564 aa23.21■■□□□ 1.31
CNOT3-209ENST00000617930 SHPRHQ149N8 1683 aa23.2■■□□□ 1.3
CNOT3-209ENST00000617930 NSD2O96028 1365 aa23.2■■□□□ 1.3
CNOT3-209ENST00000617930 APAF1O14727 1248 aa23.2■■□□□ 1.3
CNOT3-209ENST00000617930 ANP32EQ9BTT0 268 aa23.19■■□□□ 1.3
CNOT3-209ENST00000617930 RCAN3Q9UKA8 241 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 232.7 ms