RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 METP08581 1390 aa29.17■■■□□ 2.26
POLR2J3-220ENST00000613744 SALL2Q9Y467 1007 aaPredicted RBP29.16■■■□□ 2.26
POLR2J3-220ENST00000613744 STK26Q9P289 416 aa29.16■■■□□ 2.26
POLR2J3-220ENST00000613744 MED14O60244 1454 aa29.15■■■□□ 2.26
POLR2J3-220ENST00000613744 SETD1AO15047 1707 aaKnown RBP29.13■■■□□ 2.25
POLR2J3-220ENST00000613744 ASXL1Q8IXJ9 1541 aa29.12■■■□□ 2.25
POLR2J3-220ENST00000613744 KIAA1210Q9ULL0 1709 aa29.12■■■□□ 2.25
POLR2J3-220ENST00000613744 TBX22Q9Y458 520 aa29.11■■■□□ 2.25
POLR2J3-220ENST00000613744 LAMC1P11047 1609 aa29.11■■■□□ 2.25
POLR2J3-220ENST00000613744 ADGRB1O14514 1584 aa29.1■■■□□ 2.25
POLR2J3-220ENST00000613744 TRAK1Q9UPV9 953 aa29.1■■■□□ 2.25
POLR2J3-220ENST00000613744 TCERG1O14776 1098 aaKnown RBP29.08■■■□□ 2.25
POLR2J3-220ENST00000613744 PPM1GO15355 546 aaPredicted RBP29.08■■■□□ 2.25
POLR2J3-220ENST00000613744 USP47Q96K76 1375 aa29.08■■■□□ 2.25
POLR2J3-220ENST00000613744 GPRASP1Q5JY77 1395 aa29.06■■■□□ 2.24
POLR2J3-220ENST00000613744 IL27Q8NEV9 243 aa29.06■■■□□ 2.24
POLR2J3-220ENST00000613744 KIF7Q2M1P5 1343 aa29.05■■■□□ 2.24
POLR2J3-220ENST00000613744 PTPRUQ92729 1446 aa29.04■■■□□ 2.24
POLR2J3-220ENST00000613744 YTHDC2Q9H6S0 1430 aaKnown RBP29.04■■■□□ 2.24
POLR2J3-220ENST00000613744 DIP2AQ14689 1571 aa29.03■■■□□ 2.24
POLR2J3-220ENST00000613744 AMOTL2Q9Y2J4 779 aa29.03■■■□□ 2.24
POLR2J3-220ENST00000613744 MS4A1P11836 297 aa29.01■■■□□ 2.24
POLR2J3-220ENST00000613744 SAFB2Q14151 953 aaKnown RBP eCLIP29■■■□□ 2.23
POLR2J3-220ENST00000613744 LRPPRCP42704 1394 aaKnown RBP28.98■■■□□ 2.23
POLR2J3-220ENST00000613744 KCNA6P17658 529 aa28.98■■■□□ 2.23
POLR2J3-220ENST00000613744 ST20-MTHFSA0A0A6YYL1 179 aa28.97■■■□□ 2.23
POLR2J3-220ENST00000613744 DMRT2Q9Y5R5 561 aa28.97■■■□□ 2.23
POLR2J3-220ENST00000613744 NEFMP07197 916 aa28.97■■■□□ 2.23
POLR2J3-220ENST00000613744 WAPLQ7Z5K2 1190 aa28.97■■■□□ 2.23
POLR2J3-220ENST00000613744 RBM33Q96EV2 1170 aaKnown RBP28.96■■■□□ 2.23
POLR2J3-220ENST00000613744 PRAM1Q96QH2 718 aa28.94■■■□□ 2.22
POLR2J3-220ENST00000613744 ZNF335Q9H4Z2 1342 aaPredicted RBP28.94■■■□□ 2.22
POLR2J3-220ENST00000613744 CHD2O14647 1828 aaKnown RBP28.93■■■□□ 2.22
POLR2J3-220ENST00000613744 ABCC11Q96J66 1382 aa28.93■■■□□ 2.22
POLR2J3-220ENST00000613744 ROBO2Q9HCK4 1378 aa28.93■■■□□ 2.22
POLR2J3-220ENST00000613744 UBE2Q2Q8WVN8 375 aa28.92■■■□□ 2.22
POLR2J3-220ENST00000613744 PIK3R4Q99570 1358 aa28.92■■■□□ 2.22
POLR2J3-220ENST00000613744 POGKQ9P215 609 aa28.92■■■□□ 2.22
POLR2J3-220ENST00000613744 PLEKHH1Q9ULM0 1364 aa28.92■■■□□ 2.22
POLR2J3-220ENST00000613744 ARHGEF28Q8N1W1 1705 aaKnown RBP28.9■■■□□ 2.22
POLR2J3-220ENST00000613744 EIF3AQ14152 1382 aaKnown RBP28.88■■■□□ 2.21
POLR2J3-220ENST00000613744 PDE4AP27815 886 aa28.88■■■□□ 2.21
POLR2J3-220ENST00000613744 DDRGK1Q96HY6 314 aa28.88■■■□□ 2.21
POLR2J3-220ENST00000613744 BACH2Q9BYV9 841 aa28.88■■■□□ 2.21
POLR2J3-220ENST00000613744 XRN1Q8IZH2 1706 aaKnown RBP28.88■■■□□ 2.21
POLR2J3-220ENST00000613744 STRCP1A6NGW2 1772 aa28.87■■■□□ 2.21
POLR2J3-220ENST00000613744 CENPJQ9HC77 1338 aaPredicted RBP28.87■■■□□ 2.21
POLR2J3-220ENST00000613744 TECPR2O15040 1411 aa28.85■■■□□ 2.21
POLR2J3-220ENST00000613744 KNDC1Q76NI1 1749 aa28.84■■■□□ 2.21
POLR2J3-220ENST00000613744 MINK1Q8N4C8 1332 aaPredicted RBP28.84■■■□□ 2.21
POLR2J3-220ENST00000613744 CPS1P31327 1500 aa28.84■■■□□ 2.21
POLR2J3-220ENST00000613744 PNISRQ8TF01 805 aaKnown RBP28.84■■■□□ 2.21
POLR2J3-220ENST00000613744 KTN1Q86UP2 1357 aaKnown RBP28.83■■■□□ 2.21
POLR2J3-220ENST00000613744 PROSER2Q86WR7 435 aaPredicted RBP28.83■■■□□ 2.21
POLR2J3-220ENST00000613744 DLC1Q96QB1 1528 aa28.83■■■□□ 2.2
POLR2J3-220ENST00000613744 RRP1P56182 461 aaKnown RBP28.82■■■□□ 2.2
POLR2J3-220ENST00000613744 POLR3GLQ9BT43 218 aa28.82■■■□□ 2.2
POLR2J3-220ENST00000613744 TESK2Q96S53 571 aa28.81■■■□□ 2.2
POLR2J3-220ENST00000613744 NWD1Q149M9 1564 aa28.81■■■□□ 2.2
POLR2J3-220ENST00000613744 PTCH1Q13635 1447 aa28.8■■■□□ 2.2
POLR2J3-220ENST00000613744 QRICH2Q9H0J4 1663 aa28.8■■■□□ 2.2
POLR2J3-220ENST00000613744 RTN4Q9NQC3 1192 aaKnown RBP28.79■■■□□ 2.2
POLR2J3-220ENST00000613744 FAM135BQ49AJ0 1406 aa28.79■■■□□ 2.2
POLR2J3-220ENST00000613744 SIRT1Q96EB6 747 aa28.78■■■□□ 2.2
POLR2J3-220ENST00000613744 LAS1LQ9Y4W2 734 aaKnown RBP28.78■■■□□ 2.2
POLR2J3-220ENST00000613744 GSE1Q14687 1217 aa28.76■■■□□ 2.19
POLR2J3-220ENST00000613744 NPM2Q86SE8 214 aaKnown RBP28.76■■■□□ 2.19
POLR2J3-220ENST00000613744 C14orf37Q86TY3 774 aa28.76■■■□□ 2.19
POLR2J3-220ENST00000613744 BRD4O60885 1362 aaPredicted RBP28.74■■■□□ 2.19
POLR2J3-220ENST00000613744 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.74■■■□□ 2.19
POLR2J3-220ENST00000613744 NKTRP30414 1462 aaKnown RBP28.73■■■□□ 2.19
POLR2J3-220ENST00000613744 TMEM94Q12767 1356 aa28.73■■■□□ 2.19
POLR2J3-220ENST00000613744 PDE3BQ13370 1112 aa28.73■■■□□ 2.19
POLR2J3-220ENST00000613744 DISP3Q9P2K9 1392 aa28.72■■■□□ 2.19
POLR2J3-220ENST00000613744 TMC1Q8TDI8 760 aa28.7■■■□□ 2.19
POLR2J3-220ENST00000613744 TMF1P82094 1093 aa28.7■■■□□ 2.18
POLR2J3-220ENST00000613744 NUTM2FA1L443 756 aa28.69■■■□□ 2.18
POLR2J3-220ENST00000613744 EXOC6Q8TAG9 804 aa28.69■■■□□ 2.18
POLR2J3-220ENST00000613744 LRRC7Q96NW7 1537 aa28.68■■■□□ 2.18
POLR2J3-220ENST00000613744 RCAN3Q9UKA8 241 aa28.68■■■□□ 2.18
POLR2J3-220ENST00000613744 CABP2Q9NPB3 220 aa28.67■■■□□ 2.18
POLR2J3-220ENST00000613744 SBNO2Q9Y2G9 1366 aa28.66■■■□□ 2.18
POLR2J3-220ENST00000613744 CDK19Q9BWU1 502 aa28.66■■■□□ 2.18
POLR2J3-220ENST00000613744 NALCNQ8IZF0 1738 aa28.66■■■□□ 2.18
POLR2J3-220ENST00000613744 SRPK2P78362 688 aaKnown RBP28.65■■■□□ 2.18
POLR2J3-220ENST00000613744 TULP4Q9NRJ4 1543 aa28.65■■■□□ 2.18
POLR2J3-220ENST00000613744 EVC2Q86UK5 1308 aa28.65■■■□□ 2.18
POLR2J3-220ENST00000613744 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.65■■■□□ 2.18
POLR2J3-220ENST00000613744 WASLO00401 505 aaPredicted RBP28.63■■■□□ 2.17
POLR2J3-220ENST00000613744 LTBP4Q8N2S1 1624 aa28.63■■■□□ 2.17
POLR2J3-220ENST00000613744 XIRP1Q702N8 1843 aaKnown RBP28.62■■■□□ 2.17
POLR2J3-220ENST00000613744 RALBP1Q15311 655 aa28.62■■■□□ 2.17
POLR2J3-220ENST00000613744 ADGRL3Q9HAR2 1447 aa28.62■■■□□ 2.17
POLR2J3-220ENST00000613744 MYBBP1AQ9BQG0 1328 aaKnown RBP28.61■■■□□ 2.17
POLR2J3-220ENST00000613744 INSRP06213 1382 aa28.61■■■□□ 2.17
POLR2J3-220ENST00000613744 NFKBIBQ15653 356 aa28.59■■■□□ 2.17
POLR2J3-220ENST00000613744 C19orf44Q9H6X5 657 aa28.59■■■□□ 2.17
POLR2J3-220ENST00000613744 BRPF3Q9ULD4 1205 aa28.58■■■□□ 2.17
POLR2J3-220ENST00000613744 SLC24A1O60721 1099 aa28.56■■■□□ 2.16
POLR2J3-220ENST00000613744 RSPH6AQ9H0K4 717 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms