RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 ADGRB3O60242 1522 aa12.46□□□□□ -0.41
CCDC47-207ENST00000612558 CHGAP10645 457 aaKnown RBP12.46□□□□□ -0.42
CCDC47-207ENST00000612558 MLECQ14165 292 aa12.46□□□□□ -0.42
CCDC47-207ENST00000612558 SLAIN1Q8ND83 568 aa12.46□□□□□ -0.42
CCDC47-207ENST00000612558 ARID4BQ4LE39 1312 aaPredicted RBP12.46□□□□□ -0.42
CCDC47-207ENST00000612558 WASHC2AQ641Q2 1341 aa12.46□□□□□ -0.42
CCDC47-207ENST00000612558 RPGRIP1LQ68CZ1 1315 aa12.46□□□□□ -0.42
CCDC47-207ENST00000612558 SYNMO15061 1565 aa12.45□□□□□ -0.42
CCDC47-207ENST00000612558 NBPF1Q3BBV0 1214 aa12.45□□□□□ -0.42
CCDC47-207ENST00000612558 ESF1Q9H501 851 aaKnown RBP12.45□□□□□ -0.42
CCDC47-207ENST00000612558 PIK3C2BO00750 1634 aa12.45□□□□□ -0.42
CCDC47-207ENST00000612558 PREX1Q8TCU6 1659 aa12.45□□□□□ -0.42
CCDC47-207ENST00000612558 MADDQ8WXG6 1647 aa12.44□□□□□ -0.42
CCDC47-207ENST00000612558 IDI1Q13907 227 aa12.44□□□□□ -0.42
CCDC47-207ENST00000612558 MYOM2P54296 1465 aa12.44□□□□□ -0.42
CCDC47-207ENST00000612558 CLTCQ00610 1675 aaKnown RBP12.44□□□□□ -0.42
CCDC47-207ENST00000612558 LAMC1P11047 1609 aa12.44□□□□□ -0.42
CCDC47-207ENST00000612558 FBXO31Q5XUX0 539 aaPredicted RBP12.43□□□□□ -0.42
CCDC47-207ENST00000612558 MROH2AA6NES4 1674 aa12.43□□□□□ -0.42
CCDC47-207ENST00000612558 ERVK-7P63135 1459 aa12.43□□□□□ -0.42
CCDC47-207ENST00000612558 C11orf95C9JLR9 678 aaPredicted RBP12.43□□□□□ -0.42
CCDC47-207ENST00000612558 PYGBP11216 843 aa12.43□□□□□ -0.42
CCDC47-207ENST00000612558 CCDC7Q96M83 1385 aa12.42□□□□□ -0.42
CCDC47-207ENST00000612558 ST20-MTHFSA0A0A6YYL1 179 aa12.42□□□□□ -0.42
CCDC47-207ENST00000612558 IFT172Q9UG01 1749 aa12.42□□□□□ -0.42
CCDC47-207ENST00000612558 OCEL1Q9H607 264 aa12.41□□□□□ -0.42
CCDC47-207ENST00000612558 ZMYM3Q14202 1370 aa12.41□□□□□ -0.42
CCDC47-207ENST00000612558 NRXN1Q9ULB1 1477 aa12.41□□□□□ -0.42
CCDC47-207ENST00000612558 POLR1AO95602 1720 aaPredicted RBP12.4□□□□□ -0.42
CCDC47-207ENST00000612558 KIAA1210Q9ULL0 1709 aa12.4□□□□□ -0.42
CCDC47-207ENST00000612558 IRX5P78411 483 aaPredicted RBP12.4□□□□□ -0.42
CCDC47-207ENST00000612558 KLHL34Q8N239 644 aa12.4□□□□□ -0.42
CCDC47-207ENST00000612558 KIF7Q2M1P5 1343 aa12.4□□□□□ -0.42
CCDC47-207ENST00000612558 ADGRF5Q8IZF2 1346 aa12.4□□□□□ -0.42
CCDC47-207ENST00000612558 GSE1Q14687 1217 aa12.39□□□□□ -0.43
CCDC47-207ENST00000612558 SPATA31D1Q6ZQQ2 1576 aa12.39□□□□□ -0.43
CCDC47-207ENST00000612558 PPLO60437 1756 aa12.39□□□□□ -0.43
CCDC47-207ENST00000612558 VGFO15240 615 aaPredicted RBP12.39□□□□□ -0.43
CCDC47-207ENST00000612558 CFAP70Q5T0N1 1121 aa12.37□□□□□ -0.43
CCDC47-207ENST00000612558 TMEM131LA2VDJ0 1609 aa12.37□□□□□ -0.43
CCDC47-207ENST00000612558 ANP32CO43423 234 aa12.36□□□□□ -0.43
CCDC47-207ENST00000612558 NEXMIFQ5QGS0 1516 aa12.36□□□□□ -0.43
CCDC47-207ENST00000612558 SCAF11Q99590 1463 aaKnown RBP12.36□□□□□ -0.43
CCDC47-207ENST00000612558 PIK3C2GO75747 1445 aa12.36□□□□□ -0.43
CCDC47-207ENST00000612558 ZFYVE9O95405 1425 aa12.36□□□□□ -0.43
CCDC47-207ENST00000612558 SNPHO15079 494 aa12.35□□□□□ -0.43
CCDC47-207ENST00000612558 ZNF467Q7Z7K2 595 aaPredicted RBP12.35□□□□□ -0.43
CCDC47-207ENST00000612558 C14orf93Q9H972 538 aaKnown RBP12.35□□□□□ -0.43
CCDC47-207ENST00000612558 TESK2Q96S53 571 aa12.35□□□□□ -0.43
CCDC47-207ENST00000612558 MYO5BQ9ULV0 1848 aa12.34□□□□□ -0.43
CCDC47-207ENST00000612558 CDAN1Q8IWY9 1227 aa12.34□□□□□ -0.43
CCDC47-207ENST00000612558 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.34□□□□□ -0.43
CCDC47-207ENST00000612558 PCDHB8Q9UN66 801 aa12.34□□□□□ -0.43
CCDC47-207ENST00000612558 IQGAP1P46940 1657 aa12.34□□□□□ -0.43
CCDC47-207ENST00000612558 EIF3AQ14152 1382 aaKnown RBP12.33□□□□□ -0.44
CCDC47-207ENST00000612558 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
CCDC47-207ENST00000612558 SETBP1Q9Y6X0 1596 aa12.33□□□□□ -0.44
CCDC47-207ENST00000612558 SLC24A1O60721 1099 aa12.32□□□□□ -0.44
CCDC47-207ENST00000612558 TMF1P82094 1093 aa12.32□□□□□ -0.44
CCDC47-207ENST00000612558 TNRQ92752 1358 aa12.32□□□□□ -0.44
CCDC47-207ENST00000612558 ST18O60284 1047 aa12.31□□□□□ -0.44
CCDC47-207ENST00000612558 NUTM2DQ5VT03 806 aaPredicted RBP12.31□□□□□ -0.44
CCDC47-207ENST00000612558 POLR3GLQ9BT43 218 aa12.31□□□□□ -0.44
CCDC47-207ENST00000612558 A2ML1A8K2U0 1454 aa12.31□□□□□ -0.44
CCDC47-207ENST00000612558 CCER2I3L3R5 266 aa12.3□□□□□ -0.44
CCDC47-207ENST00000612558 VASPP50552 380 aaPredicted RBP12.3□□□□□ -0.44
CCDC47-207ENST00000612558 FER1L4A9Z1Z3 1794 aa12.29□□□□□ -0.44
CCDC47-207ENST00000612558 ADGRB1O14514 1584 aa12.28□□□□□ -0.44
CCDC47-207ENST00000612558 HDGFP51858 240 aaKnown RBP12.28□□□□□ -0.44
CCDC47-207ENST00000612558 MKRN3Q13064 507 aaKnown RBP12.28□□□□□ -0.44
CCDC47-207ENST00000612558 CDCA8Q53HL2 280 aa12.28□□□□□ -0.44
CCDC47-207ENST00000612558 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.28□□□□□ -0.44
CCDC47-207ENST00000612558 TMEM121BQ9BXQ6 578 aaPredicted RBP12.28□□□□□ -0.44
CCDC47-207ENST00000612558 DISP3Q9P2K9 1392 aa12.27□□□□□ -0.44
CCDC47-207ENST00000612558 CEBPAP49715 358 aaPredicted RBP12.27□□□□□ -0.44
CCDC47-207ENST00000612558 RIMS2Q9UQ26 1411 aa12.27□□□□□ -0.45
CCDC47-207ENST00000612558 KDM5AP29375 1690 aaKnown RBP12.27□□□□□ -0.45
CCDC47-207ENST00000612558 NLRP1Q9C000 1473 aa12.27□□□□□ -0.45
CCDC47-207ENST00000612558 TMEM132EQ6IEE7 984 aa12.26□□□□□ -0.45
CCDC47-207ENST00000612558 C3P01024 1663 aa12.26□□□□□ -0.45
CCDC47-207ENST00000612558 CHRM1P11229 460 aaPredicted RBP12.26□□□□□ -0.45
CCDC47-207ENST00000612558 TRAK1Q9UPV9 953 aa12.26□□□□□ -0.45
CCDC47-207ENST00000612558 SBNO2Q9Y2G9 1366 aa12.25□□□□□ -0.45
CCDC47-207ENST00000612558 L3MBTL3Q96JM7 780 aaPredicted RBP12.25□□□□□ -0.45
CCDC47-207ENST00000612558 CENPJQ9HC77 1338 aaPredicted RBP12.25□□□□□ -0.45
CCDC47-207ENST00000612558 PRKRIP1Q9H875 184 aaPredicted RBP12.24□□□□□ -0.45
CCDC47-207ENST00000612558 MYO3AQ8NEV4 1616 aa12.24□□□□□ -0.45
CCDC47-207ENST00000612558 UBR1Q8IWV7 1749 aa12.23□□□□□ -0.45
CCDC47-207ENST00000612558 C3orf67Q6ZVT6 689 aa12.22□□□□□ -0.45
CCDC47-207ENST00000612558 YTHDC1Q96MU7 727 aaKnown RBP12.22□□□□□ -0.45
CCDC47-207ENST00000612558 TMEM2Q9UHN6 1383 aa12.22□□□□□ -0.45
CCDC47-207ENST00000612558 ALKQ9UM73 1620 aa12.22□□□□□ -0.45
CCDC47-207ENST00000612558 CENPBP07199 599 aaPredicted RBP12.22□□□□□ -0.45
CCDC47-207ENST00000612558 ASXL1Q8IXJ9 1541 aa12.2□□□□□ -0.46
CCDC47-207ENST00000612558 ADAMTSL3P82987 1691 aa12.19□□□□□ -0.46
CCDC47-207ENST00000612558 PER1O15534 1290 aaPredicted RBP12.19□□□□□ -0.46
CCDC47-207ENST00000612558 THEMISQ8N1K5 641 aaPredicted RBP12.19□□□□□ -0.46
CCDC47-207ENST00000612558 PANK3Q9H999 370 aa12.19□□□□□ -0.46
CCDC47-207ENST00000612558 YTHDC2Q9H6S0 1430 aaKnown RBP12.19□□□□□ -0.46
CCDC47-207ENST00000612558 RIMS1Q86UR5 1692 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms