RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 PARD3Q8TEW0 1356 aa29.39■■■□□ 2.3
USP6NL-204ENST00000606752 SLC26A8Q96RN1 970 aa29.38■■■□□ 2.29
USP6NL-204ENST00000606752 FAM135BQ49AJ0 1406 aa29.37■■■□□ 2.29
USP6NL-204ENST00000606752 MYBBP1AQ9BQG0 1328 aaKnown RBP29.37■■■□□ 2.29
USP6NL-204ENST00000606752 CC2D1BQ5T0F9 858 aaKnown RBP29.37■■■□□ 2.29
USP6NL-204ENST00000606752 TMC1Q8TDI8 760 aa29.37■■■□□ 2.29
USP6NL-204ENST00000606752 CABP2Q9NPB3 220 aa29.37■■■□□ 2.29
USP6NL-204ENST00000606752 SLC12A5Q9H2X9 1139 aa29.36■■■□□ 2.29
USP6NL-204ENST00000606752 ZNF142P52746 1687 aaPredicted RBP29.36■■■□□ 2.29
USP6NL-204ENST00000606752 AMER1Q5JTC6 1135 aaPredicted RBP29.36■■■□□ 2.29
USP6NL-204ENST00000606752 PLEKHH1Q9ULM0 1364 aa29.35■■■□□ 2.29
USP6NL-204ENST00000606752 SRPK2P78362 688 aaKnown RBP29.35■■■□□ 2.29
USP6NL-204ENST00000606752 ANKLE2Q86XL3 938 aa29.34■■■□□ 2.29
USP6NL-204ENST00000606752 NPC1L1Q9UHC9 1359 aa29.33■■■□□ 2.29
USP6NL-204ENST00000606752 CARD14Q9BXL6 1004 aa29.33■■■□□ 2.29
USP6NL-204ENST00000606752 KNDC1Q76NI1 1749 aa29.33■■■□□ 2.29
USP6NL-204ENST00000606752 CDK19Q9BWU1 502 aa29.32■■■□□ 2.28
USP6NL-204ENST00000606752 ATAD2Q6PL18 1390 aa29.31■■■□□ 2.28
USP6NL-204ENST00000606752 CPS1P31327 1500 aa29.3■■■□□ 2.28
USP6NL-204ENST00000606752 NINLQ9Y2I6 1382 aa29.3■■■□□ 2.28
USP6NL-204ENST00000606752 DIP2AQ14689 1571 aa29.29■■■□□ 2.28
USP6NL-204ENST00000606752 BRD4O60885 1362 aaPredicted RBP29.29■■■□□ 2.28
USP6NL-204ENST00000606752 NLRP13Q86W25 1043 aa29.28■■■□□ 2.28
USP6NL-204ENST00000606752 ROBO2Q9HCK4 1378 aa29.28■■■□□ 2.28
USP6NL-204ENST00000606752 PTPRUQ92729 1446 aa29.27■■■□□ 2.28
USP6NL-204ENST00000606752 AMOTL2Q9Y2J4 779 aa29.26■■■□□ 2.27
USP6NL-204ENST00000606752 ANKRD36BQ8N2N9 1353 aa29.25■■■□□ 2.27
USP6NL-204ENST00000606752 FAM9BQ8IZU0 186 aa29.24■■■□□ 2.27
USP6NL-204ENST00000606752 WASLO00401 505 aaPredicted RBP29.23■■■□□ 2.27
USP6NL-204ENST00000606752 PIK3R4Q99570 1358 aa29.22■■■□□ 2.27
USP6NL-204ENST00000606752 NSD3Q9BZ95 1437 aa29.21■■■□□ 2.27
USP6NL-204ENST00000606752 PNISRQ8TF01 805 aaKnown RBP29.2■■■□□ 2.26
USP6NL-204ENST00000606752 TERF2IPQ9NYB0 399 aa29.18■■■□□ 2.26
USP6NL-204ENST00000606752 PTCH1Q13635 1447 aa29.17■■■□□ 2.26
USP6NL-204ENST00000606752 CABP1Q9NZU7 370 aa29.15■■■□□ 2.26
USP6NL-204ENST00000606752 CGNL1Q0VF96 1302 aa29.15■■■□□ 2.26
USP6NL-204ENST00000606752 PPP2R1AP30153 589 aa29.15■■■□□ 2.26
USP6NL-204ENST00000606752 HNRNPUQ00839 825 aaKnown RBP eCLIP29.14■■■□□ 2.26
USP6NL-204ENST00000606752 A0A1W2PP64 1363 aa29.14■■■□□ 2.26
USP6NL-204ENST00000606752 HDGFL2Q7Z4V5 671 aaPredicted RBP29.12■■■□□ 2.25
USP6NL-204ENST00000606752 NPHP4O75161 1426 aaPredicted RBP29.11■■■□□ 2.25
USP6NL-204ENST00000606752 NUDT16Q96DE0 195 aaKnown RBP29.1■■■□□ 2.25
USP6NL-204ENST00000606752 CD163L1Q9NR16 1453 aa29.1■■■□□ 2.25
USP6NL-204ENST00000606752 USP32Q8NFA0 1604 aa29.1■■■□□ 2.25
USP6NL-204ENST00000606752 KCNA6P17658 529 aa29.1■■■□□ 2.25
USP6NL-204ENST00000606752 CCDC61Q9Y6R9 512 aa29.09■■■□□ 2.25
USP6NL-204ENST00000606752 XRN1Q8IZH2 1706 aaKnown RBP29.09■■■□□ 2.25
USP6NL-204ENST00000606752 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.09■■■□□ 2.25
USP6NL-204ENST00000606752 ADGRB2O60241 1585 aa29.09■■■□□ 2.25
USP6NL-204ENST00000606752 KDM4FA0A1W2PPD8 638 aa29.08■■■□□ 2.25
USP6NL-204ENST00000606752 NCKAP5LQ9HCH0 1330 aa29.07■■■□□ 2.24
USP6NL-204ENST00000606752 NSD2O96028 1365 aa29.07■■■□□ 2.24
USP6NL-204ENST00000606752 MORC1Q86VD1 984 aa29.06■■■□□ 2.24
USP6NL-204ENST00000606752 ATP7BP35670 1465 aa29.06■■■□□ 2.24
USP6NL-204ENST00000606752 PPIP5K1Q6PFW1 1433 aa29.04■■■□□ 2.24
USP6NL-204ENST00000606752 PRR36Q9H6K5 1346 aa29.02■■■□□ 2.24
USP6NL-204ENST00000606752 CHD2O14647 1828 aaKnown RBP29■■■□□ 2.23
USP6NL-204ENST00000606752 CPSF1Q10570 1443 aaKnown RBP28.99■■■□□ 2.23
USP6NL-204ENST00000606752 FYB1O15117 783 aa28.97■■■□□ 2.23
USP6NL-204ENST00000606752 ZNF692Q9BU19 519 aaPredicted RBP28.96■■■□□ 2.23
USP6NL-204ENST00000606752 ZBED9Q6R2W3 1325 aa28.95■■■□□ 2.22
USP6NL-204ENST00000606752 PLEKHG3A1L390 1219 aa28.94■■■□□ 2.22
USP6NL-204ENST00000606752 INSRP06213 1382 aa28.94■■■□□ 2.22
USP6NL-204ENST00000606752 GGNBP2Q9H3C7 697 aa28.93■■■□□ 2.22
USP6NL-204ENST00000606752 CDC42BPGQ6DT37 1551 aa28.93■■■□□ 2.22
USP6NL-204ENST00000606752 TNNT2P45379 298 aaPredicted RBP28.92■■■□□ 2.22
USP6NL-204ENST00000606752 EDC4Q6P2E9 1401 aaKnown RBP28.92■■■□□ 2.22
USP6NL-204ENST00000606752 NUTM2FA1L443 756 aa28.92■■■□□ 2.22
USP6NL-204ENST00000606752 WDR43Q15061 677 aaKnown RBP eCLIP28.89■■■□□ 2.22
USP6NL-204ENST00000606752 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.89■■■□□ 2.229e-9■□□□□ 9.6
USP6NL-204ENST00000606752 POLR3AO14802 1390 aaPredicted RBP28.89■■■□□ 2.21
USP6NL-204ENST00000606752 HSPA2P54652 639 aa28.88■■■□□ 2.21
USP6NL-204ENST00000606752 ADAMTS8Q9UP79 889 aa28.87■■■□□ 2.21
USP6NL-204ENST00000606752 ACEP12821 1306 aa28.87■■■□□ 2.21
USP6NL-204ENST00000606752 TOPAZ1Q8N9V7 1692 aa28.86■■■□□ 2.21
USP6NL-204ENST00000606752 ANKARQ7Z5J8 1434 aa28.85■■■□□ 2.21
USP6NL-204ENST00000606752 MTHFSP49914 203 aa28.85■■■□□ 2.21
USP6NL-204ENST00000606752 NWD1Q149M9 1564 aa28.83■■■□□ 2.21
USP6NL-204ENST00000606752 GTF3C3Q9Y5Q9 886 aa28.83■■■□□ 2.21
USP6NL-204ENST00000606752 RBM33Q96EV2 1170 aaKnown RBP28.82■■■□□ 2.2
USP6NL-204ENST00000606752 LMTK3Q96Q04 1460 aa28.82■■■□□ 2.2
USP6NL-204ENST00000606752 BLMP54132 1417 aaPredicted RBP28.82■■■□□ 2.2
USP6NL-204ENST00000606752 ADGRL3Q9HAR2 1447 aa28.81■■■□□ 2.2
USP6NL-204ENST00000606752 AKAP12Q02952 1782 aa28.81■■■□□ 2.2
USP6NL-204ENST00000606752 MON2Q7Z3U7 1717 aa28.81■■■□□ 2.2
USP6NL-204ENST00000606752 ANKRD26Q9UPS8 1709 aa28.81■■■□□ 2.2
USP6NL-204ENST00000606752 CFAP53Q96M91 514 aa28.8■■■□□ 2.2
USP6NL-204ENST00000606752 NKTRP30414 1462 aaKnown RBP28.8■■■□□ 2.2
USP6NL-204ENST00000606752 SCAF1Q9H7N4 1312 aaKnown RBP28.8■■■□□ 2.2
USP6NL-204ENST00000606752 ITSN1Q15811 1721 aa28.8■■■□□ 2.2
USP6NL-204ENST00000606752 KIF20BQ96Q89 1820 aa28.79■■■□□ 2.2
USP6NL-204ENST00000606752 PROSER2Q86WR7 435 aaPredicted RBP28.78■■■□□ 2.2
USP6NL-204ENST00000606752 NME9Q86XW9 330 aa28.78■■■□□ 2.2
USP6NL-204ENST00000606752 PMFBP1Q8TBY8 1022 aa28.78■■■□□ 2.2
USP6NL-204ENST00000606752 TTC21BQ7Z4L5 1316 aa28.77■■■□□ 2.2
USP6NL-204ENST00000606752 USP6P35125 1406 aa28.77■■■□□ 2.2
USP6NL-204ENST00000606752 NALCNQ8IZF0 1738 aa28.77■■■□□ 2.2
USP6NL-204ENST00000606752 FMN2Q9NZ56 1722 aa28.77■■■□□ 2.2
USP6NL-204ENST00000606752 NGDNQ8NEJ9 315 aaKnown RBP28.76■■■□□ 2.19
USP6NL-204ENST00000606752 C14orf37Q86TY3 774 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms