RNA–Protein interactions for RNA: ENST00000601607.5

LINC00343-209, long intergenic non-protein coding RNA 343, humanhuman

TSL 5

Gene LINC00343, Length 590 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-209ENST00000601607 PCDHB3Q9Y5E6 796 aa13.37□□□□□ -0.27
LINC00343-209ENST00000601607 GCGRP47871 477 aa13.36□□□□□ -0.27
LINC00343-209ENST00000601607 COPS2P61201 443 aa13.36□□□□□ -0.27
LINC00343-209ENST00000601607 PDE4DQ08499 809 aa13.36□□□□□ -0.27
LINC00343-209ENST00000601607 GIGYF2Q6Y7W6 1299 aaKnown RBP13.36□□□□□ -0.27
LINC00343-209ENST00000601607 WIZO95785 1651 aa13.36□□□□□ -0.27
LINC00343-209ENST00000601607 SSTR3P32745 418 aaPredicted RBP13.34□□□□□ -0.27
LINC00343-209ENST00000601607 BLOC1S3Q6QNY0 202 aa13.33□□□□□ -0.28
LINC00343-209ENST00000601607 GFRA3O60609 400 aa13.32□□□□□ -0.28
LINC00343-209ENST00000601607 RSF1Q96T23 1441 aaPredicted RBP13.31□□□□□ -0.28
LINC00343-209ENST00000601607 ZPR1O75312 459 aa13.31□□□□□ -0.28
LINC00343-209ENST00000601607 FUT2Q10981 343 aa13.31□□□□□ -0.28
LINC00343-209ENST00000601607 PUS10Q3MIT2 529 aaKnown RBP13.3□□□□□ -0.28
LINC00343-209ENST00000601607 NRG2O14511 850 aaPredicted RBP13.28□□□□□ -0.28
LINC00343-209ENST00000601607 NKX2-3Q8TAU0 364 aa13.28□□□□□ -0.28
LINC00343-209ENST00000601607 EIF4G3O43432 1585 aaKnown RBP13.28□□□□□ -0.28
LINC00343-209ENST00000601607 KDM4AO75164 1064 aa13.27□□□□□ -0.29
LINC00343-209ENST00000601607 ATP6V1AP38606 617 aa13.27□□□□□ -0.29
LINC00343-209ENST00000601607 MS4A1P11836 297 aa13.26□□□□□ -0.29
LINC00343-209ENST00000601607 AQRO60306 1485 aaKnown RBP eCLIP13.25□□□□□ -0.29
LINC00343-209ENST00000601607 NR1I2O75469 434 aa13.25□□□□□ -0.29
LINC00343-209ENST00000601607 PRKCSHP14314 528 aaPredicted RBP13.24□□□□□ -0.29
LINC00343-209ENST00000601607 MORN1Q5T089 497 aa13.24□□□□□ -0.29
LINC00343-209ENST00000601607 NUTM1Q86Y26 1132 aa13.24□□□□□ -0.29
LINC00343-209ENST00000601607 BEGAINQ9BUH8 593 aa13.24□□□□□ -0.29
LINC00343-209ENST00000601607 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
LINC00343-209ENST00000601607 GRIPAP1Q4V328 841 aa13.23□□□□□ -0.29
LINC00343-209ENST00000601607 USP46P62068 366 aa13.22□□□□□ -0.29
LINC00343-209ENST00000601607 SCUBE3Q8IX30 993 aa13.22□□□□□ -0.29
LINC00343-209ENST00000601607 GPBP1L1Q9HC44 474 aaPredicted RBP13.22□□□□□ -0.29
LINC00343-209ENST00000601607 CHD1O14646 1710 aa13.22□□□□□ -0.29
LINC00343-209ENST00000601607 TRAF7Q6Q0C0 670 aa13.21□□□□□ -0.29
LINC00343-209ENST00000601607 TLL1O43897 1013 aa13.2□□□□□ -0.3
LINC00343-209ENST00000601607 SLC27A5Q9Y2P5 690 aa13.2□□□□□ -0.3
LINC00343-209ENST00000601607 HOXA2O43364 376 aa13.19□□□□□ -0.3
LINC00343-209ENST00000601607 SPIRE2Q8WWL2 714 aa13.19□□□□□ -0.3
LINC00343-209ENST00000601607 HLA-CQ95604 372 aa13.18□□□□□ -0.3
LINC00343-209ENST00000601607 KDM4CQ9H3R0 1056 aa13.18□□□□□ -0.3
LINC00343-209ENST00000601607 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
LINC00343-209ENST00000601607 PDZRN3Q9UPQ7 1066 aa13.17□□□□□ -0.3
LINC00343-209ENST00000601607 RNF223E7ERA6 249 aa13.14□□□□□ -0.31
LINC00343-209ENST00000601607 GUCA2AQ02747 115 aa13.14□□□□□ -0.31
LINC00343-209ENST00000601607 NEUROD2Q15784 382 aa13.14□□□□□ -0.31
LINC00343-209ENST00000601607 TBC1D2Q9BYX2 928 aa13.14□□□□□ -0.31
LINC00343-209ENST00000601607 CLASP1Q7Z460 1538 aa13.13□□□□□ -0.31
LINC00343-209ENST00000601607 ADH1BP00325 375 aa13.13□□□□□ -0.31
LINC00343-209ENST00000601607 ANKLE1Q8NAG6 615 aa13.13□□□□□ -0.31
LINC00343-209ENST00000601607 MOXD2PA6NHM9 499 aa13.12□□□□□ -0.31
LINC00343-209ENST00000601607 THAP11Q96EK4 314 aa13.12□□□□□ -0.31
LINC00343-209ENST00000601607 SPSB2Q99619 263 aa13.12□□□□□ -0.31
LINC00343-209ENST00000601607 TARBP1Q13395 1621 aaKnown RBP13.12□□□□□ -0.31
LINC00343-209ENST00000601607 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 LCE2BO14633 110 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 FMNL1O95466 1100 aaPredicted RBP13.11□□□□□ -0.31
LINC00343-209ENST00000601607 NDUFV2P19404 249 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 SLC19A1P41440 591 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 DIXDC1Q155Q3 683 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 Q3C1V9 767 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 DNMBPQ6XZF7 1577 aa13.11□□□□□ -0.31
LINC00343-209ENST00000601607 FDX1P10109 184 aa13.1□□□□□ -0.31
LINC00343-209ENST00000601607 BRICD5Q6PL45 260 aa13.1□□□□□ -0.31
LINC00343-209ENST00000601607 RNF19BQ6ZMZ0 732 aa13.1□□□□□ -0.31
LINC00343-209ENST00000601607 TDRD9Q8NDG6 1382 aaKnown RBP13.09□□□□□ -0.31
LINC00343-209ENST00000601607 FAM117AQ9C073 453 aa13.09□□□□□ -0.31
LINC00343-209ENST00000601607 SALL2Q9Y467 1007 aaPredicted RBP13.09□□□□□ -0.31
LINC00343-209ENST00000601607 POLA1P09884 1462 aaPredicted RBP13.09□□□□□ -0.31
LINC00343-209ENST00000601607 SNAPC4Q5SXM2 1469 aa13.09□□□□□ -0.31
LINC00343-209ENST00000601607 BRPF1P55201 1214 aaPredicted RBP13.08□□□□□ -0.32
LINC00343-209ENST00000601607 CHMP7Q8WUX9 453 aaPredicted RBP13.08□□□□□ -0.32
LINC00343-209ENST00000601607 S1PR4O95977 384 aa13.07□□□□□ -0.32
LINC00343-209ENST00000601607 SLC6A16Q9GZN6 736 aa13.07□□□□□ -0.32
LINC00343-209ENST00000601607 GAPVD1Q14C86 1478 aa13.07□□□□□ -0.32
LINC00343-209ENST00000601607 RAD54L2Q9Y4B4 1467 aa13.07□□□□□ -0.32
LINC00343-209ENST00000601607 PRDM2Q13029 1718 aa13.07□□□□□ -0.32
LINC00343-209ENST00000601607 CCDC88BA6NC98 1476 aa13.06□□□□□ -0.32
LINC00343-209ENST00000601607 PCDHGC3Q9UN70 934 aa13.06□□□□□ -0.32
LINC00343-209ENST00000601607 MYSM1Q5VVJ2 828 aa13.05□□□□□ -0.32
LINC00343-209ENST00000601607 SPRYD7Q5W111 196 aa13.05□□□□□ -0.32
LINC00343-209ENST00000601607 DDRGK1Q96HY6 314 aa13.05□□□□□ -0.32
LINC00343-209ENST00000601607 SYNJ1O43426 1573 aa13.05□□□□□ -0.32
LINC00343-209ENST00000601607 RSBN1LQ6PCB5 846 aaPredicted RBP13.04□□□□□ -0.32
LINC00343-209ENST00000601607 ZNF598Q86UK7 904 aaKnown RBP13.04□□□□□ -0.32
LINC00343-209ENST00000601607 FAM160A2Q8N612 972 aaPredicted RBP13.04□□□□□ -0.32
LINC00343-209ENST00000601607 SYMPKQ92797 1274 aaKnown RBP13.04□□□□□ -0.32
LINC00343-209ENST00000601607 RIC3Q7Z5B4 369 aa13.03□□□□□ -0.32
LINC00343-209ENST00000601607 USB1Q9BQ65 265 aaKnown RBP13.03□□□□□ -0.32
LINC00343-209ENST00000601607 SPTLC1O15269 473 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 PRR20EP86478 221 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 PRR20CP86479 221 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 PRR20DP86480 221 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 PRR20BP86481 221 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 PRR20AP86496 221 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 RSPH6AQ9H0K4 717 aa13.02□□□□□ -0.33
LINC00343-209ENST00000601607 PLEKHG3A1L390 1219 aa13.01□□□□□ -0.33
LINC00343-209ENST00000601607 C6orf229H3BNL8 230 aa13.01□□□□□ -0.33
LINC00343-209ENST00000601607 GJA5P36382 358 aa13.01□□□□□ -0.33
LINC00343-209ENST00000601607 EMID1Q96A84 441 aaPredicted RBP13.01□□□□□ -0.33
LINC00343-209ENST00000601607 PRDM9Q9NQV7 894 aa13.01□□□□□ -0.33
LINC00343-209ENST00000601607 SOGA1O94964 1423 aa13.01□□□□□ -0.33
LINC00343-209ENST00000601607 PPEF1O14829 653 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms