RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 E9PSI1 815 aa23.47■■□□□ 1.35
UPF1-210ENST00000600689 UPF2Q9HAU5 1272 aaKnown RBP23.47■■□□□ 1.35
UPF1-210ENST00000600689 RSPH6AQ9H0K4 717 aa23.46■■□□□ 1.35
UPF1-210ENST00000600689 PANK2Q9BZ23 570 aa23.46■■□□□ 1.35
UPF1-210ENST00000600689 NOS1P29475 1434 aa23.46■■□□□ 1.35
UPF1-210ENST00000600689 CYB5RLQ6IPT4 315 aa23.46■■□□□ 1.35
UPF1-210ENST00000600689 CFAP74Q9C0B2 1584 aa23.45■■□□□ 1.34
UPF1-210ENST00000600689 NUTM2DQ5VT03 806 aaPredicted RBP23.45■■□□□ 1.34
UPF1-210ENST00000600689 NAP1L5Q96NT1 182 aaPredicted RBP23.45■■□□□ 1.34
UPF1-210ENST00000600689 LMTK2Q8IWU2 1503 aa23.44■■□□□ 1.34
UPF1-210ENST00000600689 PCDHB15Q9Y5E8 787 aa23.44■■□□□ 1.34
UPF1-210ENST00000600689 NKTRP30414 1462 aaKnown RBP23.44■■□□□ 1.34
UPF1-210ENST00000600689 TBC1D2Q9BYX2 928 aa23.44■■□□□ 1.34
UPF1-210ENST00000600689 EIF3AQ14152 1382 aaKnown RBP23.43■■□□□ 1.34
UPF1-210ENST00000600689 RLBP1P12271 317 aa23.43■■□□□ 1.34
UPF1-210ENST00000600689 SENP3Q9H4L4 574 aaPredicted RBP23.43■■□□□ 1.34
UPF1-210ENST00000600689 MYOM2P54296 1465 aa23.43■■□□□ 1.34
UPF1-210ENST00000600689 PDZRN3Q9UPQ7 1066 aa23.42■■□□□ 1.34
UPF1-210ENST00000600689 CGNL1Q0VF96 1302 aa23.42■■□□□ 1.34
UPF1-210ENST00000600689 CDCA8Q53HL2 280 aa23.42■■□□□ 1.34
UPF1-210ENST00000600689 MFAP1P55081 439 aaKnown RBP23.41■■□□□ 1.34
UPF1-210ENST00000600689 IFT172Q9UG01 1749 aa23.41■■□□□ 1.34
UPF1-210ENST00000600689 KIAA1210Q9ULL0 1709 aa23.41■■□□□ 1.34
UPF1-210ENST00000600689 MYOM1P52179 1685 aa23.4■■□□□ 1.34
UPF1-210ENST00000600689 TRMT2AQ8IZ69 625 aaKnown RBP23.4■■□□□ 1.34
UPF1-210ENST00000600689 NEURL4Q96JN8 1562 aa23.4■■□□□ 1.34
UPF1-210ENST00000600689 TMEM132EQ6IEE7 984 aa23.4■■□□□ 1.34
UPF1-210ENST00000600689 TRAK1Q9UPV9 953 aa23.4■■□□□ 1.34
UPF1-210ENST00000600689 WWC1Q8IX03 1113 aa23.39■■□□□ 1.34
UPF1-210ENST00000600689 MAPK8IP3Q9UPT6 1336 aa23.39■■□□□ 1.34
UPF1-210ENST00000600689 ADGRB3O60242 1522 aa23.39■■□□□ 1.33
UPF1-210ENST00000600689 SYNMO15061 1565 aa23.39■■□□□ 1.33
UPF1-210ENST00000600689 ERVK-7P63135 1459 aa23.38■■□□□ 1.33
UPF1-210ENST00000600689 ABCC3O15438 1527 aa23.37■■□□□ 1.33
UPF1-210ENST00000600689 XRCC6P12956 609 aaKnown RBP eCLIP23.37■■□□□ 1.33
UPF1-210ENST00000600689 GOLGA6L3A6NEY3 463 aa23.36■■□□□ 1.33
UPF1-210ENST00000600689 L1TD1Q5T7N2 865 aaKnown RBP23.36■■□□□ 1.33
UPF1-210ENST00000600689 NEO1Q92859 1461 aa23.35■■□□□ 1.33
UPF1-210ENST00000600689 INSRP06213 1382 aa23.35■■□□□ 1.33
UPF1-210ENST00000600689 NRXN1Q9ULB1 1477 aa23.35■■□□□ 1.33
UPF1-210ENST00000600689 PDE3AQ14432 1141 aa23.35■■□□□ 1.33
UPF1-210ENST00000600689 CARD14Q9BXL6 1004 aa23.35■■□□□ 1.33
UPF1-210ENST00000600689 YEATS2Q9ULM3 1422 aa23.35■■□□□ 1.33
UPF1-210ENST00000600689 KDM5AP29375 1690 aaKnown RBP23.35■■□□□ 1.33
UPF1-210ENST00000600689 SIGLEC1Q9BZZ2 1709 aa23.34■■□□□ 1.33
UPF1-210ENST00000600689 ANTXR1Q9H6X2 564 aa23.34■■□□□ 1.33
UPF1-210ENST00000600689 ASXL1Q8IXJ9 1541 aa23.33■■□□□ 1.33
UPF1-210ENST00000600689 DIP2CQ9Y2E4 1556 aa23.33■■□□□ 1.32
UPF1-210ENST00000600689 TBC1D32Q96NH3 1257 aa23.32■■□□□ 1.32
UPF1-210ENST00000600689 RARSP54136 660 aaKnown RBP23.31■■□□□ 1.32
UPF1-210ENST00000600689 TCP11L2Q8N4U5 519 aa23.31■■□□□ 1.32
UPF1-210ENST00000600689 PIK3C2GO75747 1445 aa23.31■■□□□ 1.32
UPF1-210ENST00000600689 CAMSAP1Q5T5Y3 1602 aa23.3■■□□□ 1.32
UPF1-210ENST00000600689 PPLO60437 1756 aa23.3■■□□□ 1.32
UPF1-210ENST00000600689 C14orf93Q9H972 538 aaKnown RBP23.3■■□□□ 1.32
UPF1-210ENST00000600689 FOXD4L1Q9NU39 408 aa23.3■■□□□ 1.32
UPF1-210ENST00000600689 MCM4P33991 863 aa23.29■■□□□ 1.32
UPF1-210ENST00000600689 MORC1Q86VD1 984 aa23.29■■□□□ 1.32
UPF1-210ENST00000600689 PNNQ9H307 717 aaKnown RBP23.29■■□□□ 1.32
UPF1-210ENST00000600689 PMFBP1Q8TBY8 1022 aa23.29■■□□□ 1.32
UPF1-210ENST00000600689 RICTORQ6R327 1708 aa23.29■■□□□ 1.32
UPF1-210ENST00000600689 FTSJ3Q8IY81 847 aaKnown RBP23.27■■□□□ 1.32
UPF1-210ENST00000600689 IDI1Q13907 227 aa23.27■■□□□ 1.31
UPF1-210ENST00000600689 TRAK2O60296 914 aa23.26■■□□□ 1.31
UPF1-210ENST00000600689 FAM69CQ0P6D2 419 aa23.25■■□□□ 1.31
UPF1-210ENST00000600689 C22orf23Q9BZE7 217 aa23.25■■□□□ 1.31
UPF1-210ENST00000600689 TSR2Q969E8 191 aaKnown RBP23.25■■□□□ 1.31
UPF1-210ENST00000600689 SLC12A5Q9H2X9 1139 aa23.25■■□□□ 1.31
UPF1-210ENST00000600689 RWDD1Q9H446 243 aaPredicted RBP23.25■■□□□ 1.31
UPF1-210ENST00000600689 ADGRB1O14514 1584 aa23.24■■□□□ 1.31
UPF1-210ENST00000600689 SAFB2Q14151 953 aaKnown RBP eCLIP23.22■■□□□ 1.31
UPF1-210ENST00000600689 SETBP1Q9Y6X0 1596 aa23.22■■□□□ 1.31
UPF1-210ENST00000600689 MYO3AQ8NEV4 1616 aa23.22■■□□□ 1.31
UPF1-210ENST00000600689 ITPRIPQ8IWB1 547 aa23.2■■□□□ 1.3
UPF1-210ENST00000600689 NLRP1Q9C000 1473 aa23.2■■□□□ 1.3
UPF1-210ENST00000600689 RPGRIP1LQ68CZ1 1315 aa23.2■■□□□ 1.3
UPF1-210ENST00000600689 U2AF1L5P0DN76 240 aaPredicted RBP23.19■■□□□ 1.3
UPF1-210ENST00000600689 U2AF1Q01081 240 aaKnown RBP eCLIP23.19■■□□□ 1.3
UPF1-210ENST00000600689 FBXO31Q5XUX0 539 aaPredicted RBP23.19■■□□□ 1.3
UPF1-210ENST00000600689 NPC1L1Q9UHC9 1359 aa23.19■■□□□ 1.3
UPF1-210ENST00000600689 SBNO2Q9Y2G9 1366 aa23.19■■□□□ 1.3
UPF1-210ENST00000600689 SLC24A1O60721 1099 aa23.19■■□□□ 1.3
UPF1-210ENST00000600689 MTHFSP49914 203 aa23.19■■□□□ 1.3
UPF1-210ENST00000600689 QRICH2Q9H0J4 1663 aa23.19■■□□□ 1.3
UPF1-210ENST00000600689 PIK3C2BO00750 1634 aa23.18■■□□□ 1.3
UPF1-210ENST00000600689 VSIG10Q8N0Z9 540 aa23.18■■□□□ 1.3
UPF1-210ENST00000600689 RUNDC1Q96C34 613 aa23.18■■□□□ 1.3
UPF1-210ENST00000600689 VGFO15240 615 aaPredicted RBP23.17■■□□□ 1.3
UPF1-210ENST00000600689 CHMP5Q9NZZ3 219 aa23.17■■□□□ 1.3
UPF1-210ENST00000600689 TSPOAP1O95153 1857 aa23.17■■□□□ 1.3
UPF1-210ENST00000600689 NEXMIFQ5QGS0 1516 aa23.17■■□□□ 1.3
UPF1-210ENST00000600689 HSCBQ8IWL3 235 aa23.17■■□□□ 1.3
UPF1-210ENST00000600689 SMC4Q9NTJ3 1288 aa23.17■■□□□ 1.3
UPF1-210ENST00000600689 STK26Q9P289 416 aa23.17■■□□□ 1.3
UPF1-210ENST00000600689 NSD3Q9BZ95 1437 aa23.16■■□□□ 1.3
UPF1-210ENST00000600689 RIMBP3CA6NJZ7 1639 aa23.15■■□□□ 1.3
UPF1-210ENST00000600689 RIMBP3BA6NNM3 1639 aa23.15■■□□□ 1.3
UPF1-210ENST00000600689 RIMBP3Q9UFD9 1639 aa23.15■■□□□ 1.3
UPF1-210ENST00000600689 MYH16Q9H6N6 1097 aa23.15■■□□□ 1.3
UPF1-210ENST00000600689 U2SURPO15042 1029 aaKnown RBP23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms