RNA–Protein interactions for RNA: ENST00000588972.1

ATG4D-210, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 632 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-210ENST00000588972 TUSC1Q2TAM9 212 aa12.7□□□□□ -0.38
ATG4D-210ENST00000588972 HOXB3P14651 431 aaPredicted RBP12.69□□□□□ -0.38
ATG4D-210ENST00000588972 DOK7Q18PE1 504 aa12.69□□□□□ -0.38
ATG4D-210ENST00000588972 PLSCR2Q9NRY7 297 aa12.69□□□□□ -0.38
ATG4D-210ENST00000588972 SPTLC1O15269 473 aa12.68□□□□□ -0.38
ATG4D-210ENST00000588972 COL9A1P20849 921 aa12.68□□□□□ -0.38
ATG4D-210ENST00000588972 MAP3K4Q9Y6R4 1608 aa12.68□□□□□ -0.38
ATG4D-210ENST00000588972 CARMIL1Q5VZK9 1371 aa12.68□□□□□ -0.38
ATG4D-210ENST00000588972 RSBN1LQ6PCB5 846 aaPredicted RBP12.67□□□□□ -0.38
ATG4D-210ENST00000588972 MTMR14Q8NCE2 650 aa12.67□□□□□ -0.38
ATG4D-210ENST00000588972 ZNF330Q9Y3S2 320 aaPredicted RBP12.67□□□□□ -0.38
ATG4D-210ENST00000588972 TEX14Q8IWB6 1497 aa12.66□□□□□ -0.38
ATG4D-210ENST00000588972 TTBK1Q5TCY1 1321 aaPredicted RBP12.66□□□□□ -0.38
ATG4D-210ENST00000588972 UACAQ9BZF9 1416 aa12.66□□□□□ -0.38
ATG4D-210ENST00000588972 GPR153Q6NV75 609 aa12.66□□□□□ -0.38
ATG4D-210ENST00000588972 EPRSP07814 1512 aaKnown RBP12.66□□□□□ -0.38
ATG4D-210ENST00000588972 SULF1Q8IWU6 871 aa12.65□□□□□ -0.38
ATG4D-210ENST00000588972 ZSWIM6Q9HCJ5 1215 aa12.65□□□□□ -0.38
ATG4D-210ENST00000588972 TSKSQ9UJT2 592 aa12.65□□□□□ -0.38
ATG4D-210ENST00000588972 DISP1Q96F81 1524 aa12.65□□□□□ -0.38
ATG4D-210ENST00000588972 KDM5BQ9UGL1 1544 aa12.65□□□□□ -0.38
ATG4D-210ENST00000588972 ZBTB7CA1YPR0 619 aa12.64□□□□□ -0.39
ATG4D-210ENST00000588972 C3orf80F5H4A9 247 aa12.64□□□□□ -0.39
ATG4D-210ENST00000588972 NUTM1Q86Y26 1132 aa12.64□□□□□ -0.39
ATG4D-210ENST00000588972 NECTIN2Q92692 538 aa12.64□□□□□ -0.39
ATG4D-210ENST00000588972 HECW2Q9P2P5 1572 aa12.64□□□□□ -0.39
ATG4D-210ENST00000588972 ZCCHC11Q5TAX3 1644 aaKnown RBP12.63□□□□□ -0.39
ATG4D-210ENST00000588972 MOXD2PA6NHM9 499 aa12.63□□□□□ -0.39
ATG4D-210ENST00000588972 GDPD2Q9HCC8 539 aa12.63□□□□□ -0.39
ATG4D-210ENST00000588972 LHX6Q9UPM6 363 aa12.63□□□□□ -0.39
ATG4D-210ENST00000588972 COL17A1Q9UMD9 1497 aaPredicted RBP12.63□□□□□ -0.39
ATG4D-210ENST00000588972 DDX11L8A8MPP1 907 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 RIMBP2O15034 1052 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 DNAJB2P25686 324 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 CSPP1Q1MSJ5 1256 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 PPP4R3BQ5MIZ7 849 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 NUDT18Q6ZVK8 323 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 BCL2L12Q9HB09 334 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 UGGT2Q9NYU1 1516 aa12.62□□□□□ -0.39
ATG4D-210ENST00000588972 PPP1R3GB7ZBB8 358 aa12.61□□□□□ -0.39
ATG4D-210ENST00000588972 SOCS7O14512 581 aa12.61□□□□□ -0.39
ATG4D-210ENST00000588972 GJA5P36382 358 aa12.61□□□□□ -0.39
ATG4D-210ENST00000588972 QPCTQ16769 361 aa12.61□□□□□ -0.39
ATG4D-210ENST00000588972 KIAA0556O60303 1618 aa12.6□□□□□ -0.39
ATG4D-210ENST00000588972 LILRB3O75022 631 aa12.6□□□□□ -0.39
ATG4D-210ENST00000588972 NBPF26B4DH59 902 aa12.59□□□□□ -0.39
ATG4D-210ENST00000588972 NDUFV2P19404 249 aa12.59□□□□□ -0.39
ATG4D-210ENST00000588972 TRAIPQ9BWF2 469 aa12.59□□□□□ -0.39
ATG4D-210ENST00000588972 TMEM134Q9H6X4 195 aa12.59□□□□□ -0.39
ATG4D-210ENST00000588972 WDR7Q9Y4E6 1490 aa12.59□□□□□ -0.39
ATG4D-210ENST00000588972 TATDN2Q93075 761 aa12.58□□□□□ -0.4
ATG4D-210ENST00000588972 PNMA3Q9UL41 463 aa12.58□□□□□ -0.4
ATG4D-210ENST00000588972 PCDHB15Q9Y5E8 787 aa12.58□□□□□ -0.4
ATG4D-210ENST00000588972 PTPREP23469 700 aa12.57□□□□□ -0.4
ATG4D-210ENST00000588972 RTL5Q5HYW3 569 aaPredicted RBP12.57□□□□□ -0.4
ATG4D-210ENST00000588972 PSDA5PKW4 1024 aaPredicted RBP12.56□□□□□ -0.4
ATG4D-210ENST00000588972 TRIM6-TRIM34B2RNG4 842 aa12.56□□□□□ -0.4
ATG4D-210ENST00000588972 AP1G2O75843 785 aa12.56□□□□□ -0.4
ATG4D-210ENST00000588972 WWC1Q8IX03 1113 aa12.56□□□□□ -0.4
ATG4D-210ENST00000588972 RAPGEF2Q9Y4G8 1499 aa12.56□□□□□ -0.4
ATG4D-210ENST00000588972 CFAP43Q8NDM7 1665 aa12.55□□□□□ -0.4
ATG4D-210ENST00000588972 POTEJP0CG39 1038 aa12.55□□□□□ -0.4
ATG4D-210ENST00000588972 ABL2P42684 1182 aa12.55□□□□□ -0.4
ATG4D-210ENST00000588972 RANGAP1P46060 587 aaPredicted RBP12.55□□□□□ -0.4
ATG4D-210ENST00000588972 TBC1D2BQ9UPU7 963 aa12.55□□□□□ -0.4
ATG4D-210ENST00000588972 ZNF710Q8N1W2 664 aa12.54□□□□□ -0.4
ATG4D-210ENST00000588972 PRM3Q9NNZ6 103 aa12.54□□□□□ -0.4
ATG4D-210ENST00000588972 MAGI3Q5TCQ9 1506 aa12.53□□□□□ -0.4
ATG4D-210ENST00000588972 USP17L8P0C7I0 530 aa12.53□□□□□ -0.4
ATG4D-210ENST00000588972 PACS2Q86VP3 889 aa12.53□□□□□ -0.4
ATG4D-210ENST00000588972 CTTNBP2Q8WZ74 1663 aa12.52□□□□□ -0.4
ATG4D-210ENST00000588972 POM121CA8CG34 1229 aa12.52□□□□□ -0.41
ATG4D-210ENST00000588972 PRPF38BQ5VTL8 546 aaKnown RBP12.52□□□□□ -0.41
ATG4D-210ENST00000588972 RDH13Q8NBN7 331 aa12.52□□□□□ -0.41
ATG4D-210ENST00000588972 CABLES1Q8TDN4 633 aa12.52□□□□□ -0.41
ATG4D-210ENST00000588972 NUTM2BA6NNL0 878 aaPredicted RBP12.51□□□□□ -0.41
ATG4D-210ENST00000588972 NUTM2EB1AL46 878 aaPredicted RBP12.51□□□□□ -0.41
ATG4D-210ENST00000588972 KDM4AO75164 1064 aa12.51□□□□□ -0.41
ATG4D-210ENST00000588972 NUTM2DQ5VT03 806 aaPredicted RBP12.51□□□□□ -0.41
ATG4D-210ENST00000588972 NUTM2AQ8IVF1 878 aaPredicted RBP12.51□□□□□ -0.41
ATG4D-210ENST00000588972 RETREG2Q8NC44 543 aa12.51□□□□□ -0.41
ATG4D-210ENST00000588972 CALR3Q96L12 384 aaKnown RBP12.51□□□□□ -0.41
ATG4D-210ENST00000588972 SMAPO00193 183 aa12.5□□□□□ -0.41
ATG4D-210ENST00000588972 GLMNQ92990 594 aa12.5□□□□□ -0.41
ATG4D-210ENST00000588972 CCDC9Q9Y3X0 531 aaKnown RBP12.5□□□□□ -0.41
ATG4D-210ENST00000588972 CD109Q6YHK3 1445 aa12.5□□□□□ -0.41
ATG4D-210ENST00000588972 ABCA8O94911 1581 aa12.49□□□□□ -0.41
ATG4D-210ENST00000588972 GOLGA3Q08378 1498 aa12.49□□□□□ -0.41
ATG4D-210ENST00000588972 NPM2Q86SE8 214 aaKnown RBP12.49□□□□□ -0.41
ATG4D-210ENST00000588972 KCTD17Q8N5Z5 321 aa12.49□□□□□ -0.41
ATG4D-210ENST00000588972 KIF21BO75037 1637 aa12.48□□□□□ -0.41
ATG4D-210ENST00000588972 USP46P62068 366 aa12.48□□□□□ -0.41
ATG4D-210ENST00000588972 HOXA2O43364 376 aa12.47□□□□□ -0.41
ATG4D-210ENST00000588972 GCGRP47871 477 aa12.47□□□□□ -0.41
ATG4D-210ENST00000588972 PROX2Q3B8N5 592 aa12.47□□□□□ -0.41
ATG4D-210ENST00000588972 GJD4Q96KN9 370 aaPredicted RBP12.47□□□□□ -0.41
ATG4D-210ENST00000588972 ZBTB3Q9H5J0 574 aa12.47□□□□□ -0.41
ATG4D-210ENST00000588972 PPP1R15AO75807 674 aaPredicted RBP12.46□□□□□ -0.41
ATG4D-210ENST00000588972 FDX1P10109 184 aa12.45□□□□□ -0.42
ATG4D-210ENST00000588972 SP7Q8TDD2 431 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms