RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 GPATCH8Q9UKJ3 1502 aaKnown RBP6.57□□□□□ -1.36
LIG3-211ENST00000588713 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.57□□□□□ -1.36
LIG3-211ENST00000588713 PTCH1Q13635 1447 aa6.57□□□□□ -1.36
LIG3-211ENST00000588713 MROH1Q8NDA8 1641 aa6.57□□□□□ -1.36
LIG3-211ENST00000588713 BRWD3Q6RI45 1802 aa6.56□□□□□ -1.36
LIG3-211ENST00000588713 KCNQ2O43526 872 aa6.56□□□□□ -1.36
LIG3-211ENST00000588713 HSPA6P17066 643 aa6.56□□□□□ -1.36
LIG3-211ENST00000588713 GLI3P10071 1580 aa6.56□□□□□ -1.36
LIG3-211ENST00000588713 UTRNP46939 3433 aa6.56□□□□□ -1.36
LIG3-211ENST00000588713 TET3O43151 1660 aa6.55□□□□□ -1.36
LIG3-211ENST00000588713 ARHGAP35Q9NRY4 1499 aa6.55□□□□□ -1.36
LIG3-211ENST00000588713 CDC42BPAQ5VT25 1732 aa6.55□□□□□ -1.36
LIG3-211ENST00000588713 SPHKAPQ2M3C7 1700 aa6.54□□□□□ -1.36
LIG3-211ENST00000588713 NCOA3Q9Y6Q9 1424 aa6.54□□□□□ -1.36
LIG3-211ENST00000588713 GALR2O43603 387 aaPredicted RBP6.54□□□□□ -1.36
LIG3-211ENST00000588713 PPP1R15AO75807 674 aaPredicted RBP6.54□□□□□ -1.36
LIG3-211ENST00000588713 FAM182BQ5T319 152 aa6.54□□□□□ -1.36
LIG3-211ENST00000588713 CCDC9Q9Y3X0 531 aaKnown RBP6.54□□□□□ -1.36
LIG3-211ENST00000588713 KIAA1107Q9UPP5 1409 aa6.53□□□□□ -1.36
LIG3-211ENST00000588713 UNC5CLQ8IV45 518 aa6.53□□□□□ -1.36
LIG3-211ENST00000588713 PHF12Q96QT6 1004 aa6.53□□□□□ -1.36
LIG3-211ENST00000588713 PIK3C2BO00750 1634 aa6.53□□□□□ -1.36
LIG3-211ENST00000588713 PLEKHH2Q8IVE3 1493 aa6.53□□□□□ -1.36
LIG3-211ENST00000588713 MST1RQ04912 1400 aa6.52□□□□□ -1.37
LIG3-211ENST00000588713 CFDP1Q9UEE9 299 aaPredicted RBP6.52□□□□□ -1.37
LIG3-211ENST00000588713 EFCAB6Q5THR3 1501 aa6.51□□□□□ -1.37
LIG3-211ENST00000588713 FAM83GA6ND36 823 aa6.51□□□□□ -1.37
LIG3-211ENST00000588713 MNX1P50219 401 aaPredicted RBP6.51□□□□□ -1.37
LIG3-211ENST00000588713 NBPF8Q3BBV2 869 aa6.51□□□□□ -1.37
LIG3-211ENST00000588713 NBPF14Q5TI25 921 aa6.51□□□□□ -1.37
LIG3-211ENST00000588713 NRKQ7Z2Y5 1582 aa6.51□□□□□ -1.37
LIG3-211ENST00000588713 FMN1Q68DA7 1419 aa6.5□□□□□ -1.37
LIG3-211ENST00000588713 RGPD1P0DJD0 1748 aa6.5□□□□□ -1.37
LIG3-211ENST00000588713 CHD4Q14839 1912 aa6.5□□□□□ -1.37
LIG3-211ENST00000588713 CFAP65Q6ZU64 1925 aaKnown RBP6.5□□□□□ -1.37
LIG3-211ENST00000588713 CAMKK2Q96RR4 588 aa6.5□□□□□ -1.37
LIG3-211ENST00000588713 FHDC1Q9C0D6 1143 aaPredicted RBP6.5□□□□□ -1.37
LIG3-211ENST00000588713 DISP2A7MBM2 1401 aa6.5□□□□□ -1.37
LIG3-211ENST00000588713 CHD2O14647 1828 aaKnown RBP6.49□□□□□ -1.37
LIG3-211ENST00000588713 GPR162Q16538 588 aa6.49□□□□□ -1.37
LIG3-211ENST00000588713 SYT17Q9BSW7 474 aa6.49□□□□□ -1.37
LIG3-211ENST00000588713 WWC3Q9ULE0 1092 aa6.49□□□□□ -1.37
LIG3-211ENST00000588713 ZNF644Q9H582 1327 aaPredicted RBP6.49□□□□□ -1.37
LIG3-211ENST00000588713 MYOM2P54296 1465 aa6.48□□□□□ -1.37
LIG3-211ENST00000588713 TRIM37O94972 964 aa6.48□□□□□ -1.37
LIG3-211ENST00000588713 ZBTB7AO95365 584 aa6.48□□□□□ -1.37
LIG3-211ENST00000588713 APBA3O96018 575 aa6.48□□□□□ -1.37
LIG3-211ENST00000588713 DCCP43146 1447 aa6.48□□□□□ -1.37
LIG3-211ENST00000588713 ADGRB2O60241 1585 aa6.48□□□□□ -1.37
LIG3-211ENST00000588713 SHANK3Q9BYB0 1731 aa6.47□□□□□ -1.37
LIG3-211ENST00000588713 MYOM1P52179 1685 aa6.47□□□□□ -1.37
LIG3-211ENST00000588713 FAM98CQ17RN3 349 aaKnown RBP6.47□□□□□ -1.37
LIG3-211ENST00000588713 LRRIQ1Q96JM4 1722 aa6.47□□□□□ -1.37
LIG3-211ENST00000588713 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.47□□□□□ -1.37
LIG3-211ENST00000588713 SOS2Q07890 1332 aaPredicted RBP6.47□□□□□ -1.37
LIG3-211ENST00000588713 PLEKHG1Q9ULL1 1385 aa6.46□□□□□ -1.37
LIG3-211ENST00000588713 SLIT2O94813 1529 aa6.46□□□□□ -1.37
LIG3-211ENST00000588713 CEP152O94986 1710 aa6.46□□□□□ -1.38
LIG3-211ENST00000588713 IDI1Q13907 227 aa6.46□□□□□ -1.38
LIG3-211ENST00000588713 PROM2Q8N271 834 aa6.46□□□□□ -1.38
LIG3-211ENST00000588713 ZNF526Q8TF50 670 aaPredicted RBP6.46□□□□□ -1.38
LIG3-211ENST00000588713 PCGF6Q9BYE7 350 aa6.46□□□□□ -1.38
LIG3-211ENST00000588713 TSPYL2Q9H2G4 693 aaPredicted RBP6.46□□□□□ -1.38
LIG3-211ENST00000588713 TNS1Q9HBL0 1735 aaKnown RBP6.46□□□□□ -1.38
LIG3-211ENST00000588713 GPBP1L1Q9HC44 474 aaPredicted RBP6.46□□□□□ -1.38
LIG3-211ENST00000588713 PARD3Q8TEW0 1356 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 CCNB3Q8WWL7 1395 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 PLEKHG5O94827 1062 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 APLP1P51693 650 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 VPS72Q15906 364 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 AMOTL2Q9Y2J4 779 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 COL22A1Q8NFW1 1626 aaPredicted RBP6.45□□□□□ -1.38
LIG3-211ENST00000588713 MBD5Q9P267 1494 aa6.45□□□□□ -1.38
LIG3-211ENST00000588713 MARF1Q9Y4F3 1742 aaKnown RBP6.45□□□□□ -1.38
LIG3-211ENST00000588713 ATP10DQ9P241 1426 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 ONECUT3O60422 494 aaPredicted RBP6.44□□□□□ -1.38
LIG3-211ENST00000588713 ZEB1P37275 1124 aaPredicted RBP6.44□□□□□ -1.38
LIG3-211ENST00000588713 XPCQ01831 940 aaPredicted RBP6.44□□□□□ -1.38
LIG3-211ENST00000588713 FAM161AQ3B820 660 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 MIER1Q8N108 512 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 ORAI2Q96SN7 254 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 PDGFDQ9GZP0 370 aaPredicted RBP6.44□□□□□ -1.38
LIG3-211ENST00000588713 TBX22Q9Y458 520 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 CCDC18Q5T9S5 1454 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 NUP188Q5SRE5 1749 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 ADGRB3O60242 1522 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 DLC1Q96QB1 1528 aa6.44□□□□□ -1.38
LIG3-211ENST00000588713 ADGRL3Q9HAR2 1447 aa6.43□□□□□ -1.38
LIG3-211ENST00000588713 PTGER2P43116 358 aa6.43□□□□□ -1.38
LIG3-211ENST00000588713 HAP1P54257 671 aaPredicted RBP6.43□□□□□ -1.38
LIG3-211ENST00000588713 KLHL34Q8N239 644 aa6.43□□□□□ -1.38
LIG3-211ENST00000588713 DNAJC5GQ8N7S2 189 aa6.43□□□□□ -1.38
LIG3-211ENST00000588713 MS4A3Q96HJ5 214 aa6.43□□□□□ -1.38
LIG3-211ENST00000588713 TRPM2O94759 1503 aa6.43□□□□□ -1.38
LIG3-211ENST00000588713 C1orf167Q5SNV9 1468 aa6.42□□□□□ -1.38
LIG3-211ENST00000588713 PPARGC1BQ86YN6 1023 aaKnown RBP6.42□□□□□ -1.38
LIG3-211ENST00000588713 RREB1Q92766 1687 aa6.42□□□□□ -1.38
LIG3-211ENST00000588713 NOS1P29475 1434 aa6.42□□□□□ -1.38
LIG3-211ENST00000588713 TNS2Q63HR2 1409 aa6.42□□□□□ -1.38
LIG3-211ENST00000588713 PTPRUQ92729 1446 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms