RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SIRT1Q96EB6 747 aa19.03■□□□□ 0.64
LIG3-205ENST00000585941 NSD3Q9BZ95 1437 aa19.03■□□□□ 0.64
LIG3-205ENST00000585941 SLC12A5Q9H2X9 1139 aa19.02■□□□□ 0.64
LIG3-205ENST00000585941 NSD2O96028 1365 aa19.02■□□□□ 0.63
LIG3-205ENST00000585941 CGNL1Q0VF96 1302 aa19.01■□□□□ 0.63
LIG3-205ENST00000585941 TECPR2O15040 1411 aa19■□□□□ 0.63
LIG3-205ENST00000585941 BLMP54132 1417 aaPredicted RBP19■□□□□ 0.63
LIG3-205ENST00000585941 SMG6Q86US8 1419 aaKnown RBP19■□□□□ 0.63
LIG3-205ENST00000585941 PLEKHG1Q9ULL1 1385 aa19■□□□□ 0.63
LIG3-205ENST00000585941 SRPK2P78362 688 aaKnown RBP19■□□□□ 0.63
LIG3-205ENST00000585941 SAFB2Q14151 953 aaKnown RBP eCLIP19■□□□□ 0.63
LIG3-205ENST00000585941 SLIT1O75093 1534 aa19■□□□□ 0.63
LIG3-205ENST00000585941 FAM135BQ49AJ0 1406 aa19■□□□□ 0.63
LIG3-205ENST00000585941 CABP2Q9NPB3 220 aa18.99■□□□□ 0.63
LIG3-205ENST00000585941 MINK1Q8N4C8 1332 aaPredicted RBP18.99■□□□□ 0.63
LIG3-205ENST00000585941 CPS1P31327 1500 aa18.98■□□□□ 0.63
LIG3-205ENST00000585941 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
LIG3-205ENST00000585941 EID1Q9Y6B2 187 aa18.98■□□□□ 0.63
LIG3-205ENST00000585941 ARHGAP23Q9P227 1491 aa18.98■□□□□ 0.63
LIG3-205ENST00000585941 CEBPAP49715 358 aaPredicted RBP18.97■□□□□ 0.63
LIG3-205ENST00000585941 WDR43Q15061 677 aaKnown RBP eCLIP18.97■□□□□ 0.63
LIG3-205ENST00000585941 TERF2IPQ9NYB0 399 aa18.97■□□□□ 0.63
LIG3-205ENST00000585941 METP08581 1390 aa18.97■□□□□ 0.63
LIG3-205ENST00000585941 FKBP8Q14318 412 aa18.96■□□□□ 0.63
LIG3-205ENST00000585941 PDE3BQ13370 1112 aa18.95■□□□□ 0.62
LIG3-205ENST00000585941 THEMISQ8N1K5 641 aaPredicted RBP18.95■□□□□ 0.62
LIG3-205ENST00000585941 BCANQ96GW7 911 aa18.95■□□□□ 0.62
LIG3-205ENST00000585941 CDK19Q9BWU1 502 aa18.95■□□□□ 0.62
LIG3-205ENST00000585941 NUDCQ9Y266 331 aa18.95■□□□□ 0.62
LIG3-205ENST00000585941 MORC1Q86VD1 984 aa18.94■□□□□ 0.62
LIG3-205ENST00000585941 ADAMTS13Q76LX8 1427 aa18.93■□□□□ 0.62
LIG3-205ENST00000585941 TXNDC2Q86VQ3 553 aa18.93■□□□□ 0.62
LIG3-205ENST00000585941 POLR3AO14802 1390 aaPredicted RBP18.92■□□□□ 0.62
LIG3-205ENST00000585941 ERICH6BQ5W0A0 696 aa18.92■□□□□ 0.62
LIG3-205ENST00000585941 DIP2AQ14689 1571 aa18.92■□□□□ 0.62
LIG3-205ENST00000585941 MED14O60244 1454 aa18.92■□□□□ 0.62
LIG3-205ENST00000585941 A0A1W2PP64 1363 aa18.92■□□□□ 0.62
LIG3-205ENST00000585941 HDGFL2Q7Z4V5 671 aaPredicted RBP18.91■□□□□ 0.62
LIG3-205ENST00000585941 RIMS1Q86UR5 1692 aaKnown RBP18.91■□□□□ 0.62
LIG3-205ENST00000585941 ATP7BP35670 1465 aa18.9■□□□□ 0.62
LIG3-205ENST00000585941 LTKP29376 864 aa18.9■□□□□ 0.62
LIG3-205ENST00000585941 WAPLQ7Z5K2 1190 aa18.9■□□□□ 0.62
LIG3-205ENST00000585941 PELP1Q8IZL8 1130 aaKnown RBP18.9■□□□□ 0.62
LIG3-205ENST00000585941 ADAMTS8Q9UP79 889 aa18.9■□□□□ 0.62
LIG3-205ENST00000585941 ANKRD26Q9UPS8 1709 aa18.9■□□□□ 0.62
LIG3-205ENST00000585941 PLEKHH1Q9ULM0 1364 aa18.9■□□□□ 0.62
LIG3-205ENST00000585941 ADAMTSL3P82987 1691 aa18.89■□□□□ 0.61
LIG3-205ENST00000585941 CEP170BQ9Y4F5 1589 aaPredicted RBP18.88■□□□□ 0.61
LIG3-205ENST00000585941 WASLO00401 505 aaPredicted RBP18.88■□□□□ 0.61
LIG3-205ENST00000585941 CD163L1Q9NR16 1453 aa18.88■□□□□ 0.61
LIG3-205ENST00000585941 TBX22Q9Y458 520 aa18.87■□□□□ 0.61
LIG3-205ENST00000585941 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
LIG3-205ENST00000585941 ADGRB2O60241 1585 aa18.86■□□□□ 0.61
LIG3-205ENST00000585941 SETD1BQ9UPS6 1966 aaKnown RBP18.86■□□□□ 0.61
LIG3-205ENST00000585941 ZNF142P52746 1687 aaPredicted RBP18.85■□□□□ 0.61
LIG3-205ENST00000585941 CFAP53Q96M91 514 aa18.85■□□□□ 0.61
LIG3-205ENST00000585941 KIF20BQ96Q89 1820 aa18.85■□□□□ 0.61
LIG3-205ENST00000585941 CABP1Q9NZU7 370 aa18.84■□□□□ 0.61
LIG3-205ENST00000585941 ROBO2Q9HCK4 1378 aa18.82■□□□□ 0.6
LIG3-205ENST00000585941 PLPPR3Q6T4P5 718 aa18.82■□□□□ 0.6
LIG3-205ENST00000585941 PTCH1Q13635 1447 aa18.81■□□□□ 0.6
LIG3-205ENST00000585941 SHPRHQ149N8 1683 aa18.81■□□□□ 0.6
LIG3-205ENST00000585941 PPIP5K1Q6PFW1 1433 aa18.8■□□□□ 0.6
LIG3-205ENST00000585941 PIK3R4Q99570 1358 aa18.8■□□□□ 0.6
LIG3-205ENST00000585941 RNF123Q5XPI4 1314 aa18.8■□□□□ 0.6
LIG3-205ENST00000585941 CPSF1Q10570 1443 aaKnown RBP18.8■□□□□ 0.6
LIG3-205ENST00000585941 CDC42BPGQ6DT37 1551 aa18.79■□□□□ 0.6
LIG3-205ENST00000585941 FYB1O15117 783 aa18.79■□□□□ 0.6
LIG3-205ENST00000585941 CCDC61Q9Y6R9 512 aa18.79■□□□□ 0.6
LIG3-205ENST00000585941 MTHFSP49914 203 aa18.79■□□□□ 0.6
LIG3-205ENST00000585941 NUDT16Q96DE0 195 aaKnown RBP18.79■□□□□ 0.6
LIG3-205ENST00000585941 SLC26A8Q96RN1 970 aa18.79■□□□□ 0.6
LIG3-205ENST00000585941 EDC4Q6P2E9 1401 aaKnown RBP18.78■□□□□ 0.6
LIG3-205ENST00000585941 ITSN1Q15811 1721 aa18.78■□□□□ 0.6
LIG3-205ENST00000585941 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.78■□□□□ 0.6
LIG3-205ENST00000585941 TNNT2P45379 298 aaPredicted RBP18.78■□□□□ 0.6
LIG3-205ENST00000585941 PTPRUQ92729 1446 aa18.78■□□□□ 0.6
LIG3-205ENST00000585941 SALL2Q9Y467 1007 aaPredicted RBP18.77■□□□□ 0.6
LIG3-205ENST00000585941 AKAP12Q02952 1782 aa18.77■□□□□ 0.6
LIG3-205ENST00000585941 MON2Q7Z3U7 1717 aa18.77■□□□□ 0.6
LIG3-205ENST00000585941 XRN1Q8IZH2 1706 aaKnown RBP18.76■□□□□ 0.59
LIG3-205ENST00000585941 ZNF692Q9BU19 519 aaPredicted RBP18.76■□□□□ 0.59
LIG3-205ENST00000585941 AMOTL2Q9Y2J4 779 aa18.76■□□□□ 0.59
LIG3-205ENST00000585941 GGNBP2Q9H3C7 697 aa18.76■□□□□ 0.59
LIG3-205ENST00000585941 SENP3-EIF4A1A0A087X0R7 540 aa18.75■□□□□ 0.59
LIG3-205ENST00000585941 TOPAZ1Q8N9V7 1692 aa18.74■□□□□ 0.59
LIG3-205ENST00000585941 ANKLE2Q86XL3 938 aa18.74■□□□□ 0.59
LIG3-205ENST00000585941 ZNF521Q96K83 1311 aa18.74■□□□□ 0.59
LIG3-205ENST00000585941 GOLGA2Q08379 1002 aa18.72■□□□□ 0.59
LIG3-205ENST00000585941 NCBP3Q53F19 620 aaKnown RBP18.72■□□□□ 0.59
LIG3-205ENST00000585941 RCAN3Q9UKA8 241 aa18.72■□□□□ 0.59
LIG3-205ENST00000585941 RUNDC1Q96C34 613 aa18.71■□□□□ 0.59
LIG3-205ENST00000585941 PPP4R2Q9NY27 417 aa18.71■□□□□ 0.59
LIG3-205ENST00000585941 APAF1O14727 1248 aa18.7■□□□□ 0.58
LIG3-205ENST00000585941 CCDC146Q8IYE0 955 aa18.7■□□□□ 0.58
LIG3-205ENST00000585941 PLEKHG3A1L390 1219 aa18.69■□□□□ 0.58
LIG3-205ENST00000585941 CDCA7LQ96GN5 454 aa18.69■□□□□ 0.58
LIG3-205ENST00000585941 PRR36Q9H6K5 1346 aa18.69■□□□□ 0.58
LIG3-205ENST00000585941 IRX6P78412 446 aaPredicted RBP18.69■□□□□ 0.58
LIG3-205ENST00000585941 COL3A1P02461 1466 aaPredicted RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms