RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 MYOM2P54296 1465 aa14.41□□□□□ -0.1
LIG3-203ENST00000585370 SPATA31A6Q5VVP1 1343 aa14.4□□□□□ -0.1
LIG3-203ENST00000585370 XRN1Q8IZH2 1706 aaKnown RBP14.39□□□□□ -0.11
LIG3-203ENST00000585370 AHDC1Q5TGY3 1603 aaPredicted RBP14.39□□□□□ -0.11
LIG3-203ENST00000585370 KIF7Q2M1P5 1343 aa14.39□□□□□ -0.11
LIG3-203ENST00000585370 LRP6O75581 1613 aa14.38□□□□□ -0.11
LIG3-203ENST00000585370 NEXMIFQ5QGS0 1516 aa14.38□□□□□ -0.11
LIG3-203ENST00000585370 ST20-MTHFSA0A0A6YYL1 179 aa14.38□□□□□ -0.11
LIG3-203ENST00000585370 CCER2I3L3R5 266 aa14.38□□□□□ -0.11
LIG3-203ENST00000585370 NBPF1Q3BBV0 1214 aa14.38□□□□□ -0.11
LIG3-203ENST00000585370 C11orf95C9JLR9 678 aaPredicted RBP14.37□□□□□ -0.11
LIG3-203ENST00000585370 VGFO15240 615 aaPredicted RBP14.37□□□□□ -0.11
LIG3-203ENST00000585370 DCCP43146 1447 aa14.37□□□□□ -0.11
LIG3-203ENST00000585370 KIAA1210Q9ULL0 1709 aa14.36□□□□□ -0.11
LIG3-203ENST00000585370 MST1RQ04912 1400 aa14.36□□□□□ -0.11
LIG3-203ENST00000585370 CENPBP07199 599 aaPredicted RBP14.36□□□□□ -0.11
LIG3-203ENST00000585370 MEX3CQ5U5Q3 659 aaKnown RBP14.35□□□□□ -0.11
LIG3-203ENST00000585370 NRXN1Q9ULB1 1477 aa14.35□□□□□ -0.11
LIG3-203ENST00000585370 DDX17Q92841 729 aaKnown RBP14.34□□□□□ -0.11
LIG3-203ENST00000585370 ASXL1Q8IXJ9 1541 aa14.34□□□□□ -0.11
LIG3-203ENST00000585370 SHPRHQ149N8 1683 aa14.33□□□□□ -0.11
LIG3-203ENST00000585370 NUTM2BA6NNL0 878 aaPredicted RBP14.33□□□□□ -0.12
LIG3-203ENST00000585370 NUTM2EB1AL46 878 aaPredicted RBP14.33□□□□□ -0.12
LIG3-203ENST00000585370 ZNF772Q68DY9 489 aaPredicted RBP14.33□□□□□ -0.12
LIG3-203ENST00000585370 NUTM2AQ8IVF1 878 aaPredicted RBP14.33□□□□□ -0.12
LIG3-203ENST00000585370 EIF3AQ14152 1382 aaKnown RBP14.33□□□□□ -0.12
LIG3-203ENST00000585370 ADGRL3Q9HAR2 1447 aa14.32□□□□□ -0.12
LIG3-203ENST00000585370 TMF1P82094 1093 aa14.32□□□□□ -0.12
LIG3-203ENST00000585370 CDCA8Q53HL2 280 aa14.32□□□□□ -0.12
LIG3-203ENST00000585370 ADGRF5Q8IZF2 1346 aa14.32□□□□□ -0.12
LIG3-203ENST00000585370 LRRC59Q96AG4 307 aaKnown RBP14.31□□□□□ -0.12
LIG3-203ENST00000585370 C14orf93Q9H972 538 aaKnown RBP14.31□□□□□ -0.12
LIG3-203ENST00000585370 ROBO2Q9HCK4 1378 aa14.31□□□□□ -0.12
LIG3-203ENST00000585370 IFT172Q9UG01 1749 aa14.3□□□□□ -0.12
LIG3-203ENST00000585370 SETD1AO15047 1707 aaKnown RBP14.29□□□□□ -0.12
LIG3-203ENST00000585370 CFAP70Q5T0N1 1121 aa14.29□□□□□ -0.12
LIG3-203ENST00000585370 TESK2Q96S53 571 aa14.29□□□□□ -0.12
LIG3-203ENST00000585370 NHSL1Q5SYE7 1610 aa14.29□□□□□ -0.12
LIG3-203ENST00000585370 NALCNQ8IZF0 1738 aa14.29□□□□□ -0.12
LIG3-203ENST00000585370 PTCH1Q13635 1447 aa14.28□□□□□ -0.12
LIG3-203ENST00000585370 C1orf167Q5SNV9 1468 aa14.28□□□□□ -0.12
LIG3-203ENST00000585370 PPLO60437 1756 aa14.27□□□□□ -0.12
LIG3-203ENST00000585370 PIK3C2GO75747 1445 aa14.27□□□□□ -0.12
LIG3-203ENST00000585370 RXRBP28702 533 aa14.27□□□□□ -0.13
LIG3-203ENST00000585370 ORAI2Q96SN7 254 aa14.27□□□□□ -0.13
LIG3-203ENST00000585370 AFF2P51816 1311 aa14.26□□□□□ -0.13
LIG3-203ENST00000585370 PNPLA6Q8IY17 1366 aa14.25□□□□□ -0.13
LIG3-203ENST00000585370 POLR3GLQ9BT43 218 aa14.25□□□□□ -0.13
LIG3-203ENST00000585370 SOS2Q07890 1332 aaPredicted RBP14.24□□□□□ -0.13
LIG3-203ENST00000585370 UPF1Q92900 1129 aaKnown RBP eCLIP14.24□□□□□ -0.13
LIG3-203ENST00000585370 KTN1Q86UP2 1357 aaKnown RBP14.23□□□□□ -0.13
LIG3-203ENST00000585370 C8orf37Q96NL8 207 aa14.23□□□□□ -0.13
LIG3-203ENST00000585370 PRKRIP1Q9H875 184 aaPredicted RBP14.23□□□□□ -0.13
LIG3-203ENST00000585370 SBNO2Q9Y2G9 1366 aa14.22□□□□□ -0.13
LIG3-203ENST00000585370 QTRT2Q9H974 415 aaKnown RBP14.22□□□□□ -0.13
LIG3-203ENST00000585370 ADAMTS2O95450 1211 aa14.21□□□□□ -0.13
LIG3-203ENST00000585370 WAPLQ7Z5K2 1190 aa14.21□□□□□ -0.13
LIG3-203ENST00000585370 TMEM132EQ6IEE7 984 aa14.2□□□□□ -0.14
LIG3-203ENST00000585370 PUS7Q96PZ0 661 aaKnown RBP14.2□□□□□ -0.14
LIG3-203ENST00000585370 STK26Q9P289 416 aa14.2□□□□□ -0.14
LIG3-203ENST00000585370 CDK12Q9NYV4 1490 aaPredicted RBP14.19□□□□□ -0.14
LIG3-203ENST00000585370 ESCO1Q5FWF5 840 aa14.19□□□□□ -0.14
LIG3-203ENST00000585370 NGLY1Q96IV0 654 aa14.19□□□□□ -0.14
LIG3-203ENST00000585370 YTHDC1Q96MU7 727 aaKnown RBP14.19□□□□□ -0.14
LIG3-203ENST00000585370 SRCAPQ6ZRS2 3230 aa14.19□□□□□ -0.14
LIG3-203ENST00000585370 CENPJQ9HC77 1338 aaPredicted RBP14.18□□□□□ -0.14
LIG3-203ENST00000585370 RBM6P78332 1123 aaKnown RBP14.18□□□□□ -0.14
LIG3-203ENST00000585370 RALBP1Q15311 655 aa14.18□□□□□ -0.14
LIG3-203ENST00000585370 ADGRB1O14514 1584 aa14.17□□□□□ -0.14
LIG3-203ENST00000585370 FOXO3O43524 673 aa14.17□□□□□ -0.14
LIG3-203ENST00000585370 LRPPRCP42704 1394 aaKnown RBP14.17□□□□□ -0.14
LIG3-203ENST00000585370 ABCC11Q96J66 1382 aa14.17□□□□□ -0.14
LIG3-203ENST00000585370 TECPR2O15040 1411 aa14.16□□□□□ -0.14
LIG3-203ENST00000585370 NUTM2FA1L443 756 aa14.16□□□□□ -0.14
LIG3-203ENST00000585370 PLEKHH1Q9ULM0 1364 aa14.16□□□□□ -0.14
LIG3-203ENST00000585370 NPHP3Q7Z494 1330 aa14.15□□□□□ -0.14
LIG3-203ENST00000585370 XPCQ01831 940 aaPredicted RBP14.15□□□□□ -0.14
LIG3-203ENST00000585370 FNBP4Q8N3X1 1017 aaPredicted RBP14.15□□□□□ -0.14
LIG3-203ENST00000585370 USP21Q9UK80 565 aa14.15□□□□□ -0.14
LIG3-203ENST00000585370 TRAK1Q9UPV9 953 aa14.15□□□□□ -0.14
LIG3-203ENST00000585370 RGS12O14924 1447 aa14.15□□□□□ -0.14
LIG3-203ENST00000585370 CDC42BPGQ6DT37 1551 aa14.14□□□□□ -0.15
LIG3-203ENST00000585370 PER1O15534 1290 aaPredicted RBP14.14□□□□□ -0.15
LIG3-203ENST00000585370 PANK3Q9H999 370 aa14.14□□□□□ -0.15
LIG3-203ENST00000585370 PXDNQ92626 1479 aa14.13□□□□□ -0.15
LIG3-203ENST00000585370 EP400Q96L91 3159 aa14.13□□□□□ -0.15
LIG3-203ENST00000585370 SIRT1Q96EB6 747 aa14.12□□□□□ -0.15
LIG3-203ENST00000585370 TRPC5Q9UL62 973 aaPredicted RBP14.12□□□□□ -0.15
LIG3-203ENST00000585370 YTHDC2Q9H6S0 1430 aaKnown RBP14.12□□□□□ -0.15
LIG3-203ENST00000585370 COL22A1Q8NFW1 1626 aaPredicted RBP14.12□□□□□ -0.15
LIG3-203ENST00000585370 EVC2Q86UK5 1308 aa14.11□□□□□ -0.15
LIG3-203ENST00000585370 MRS2Q9HD23 443 aa14.1□□□□□ -0.15
LIG3-203ENST00000585370 KNSTRNQ9Y448 316 aa14.1□□□□□ -0.15
LIG3-203ENST00000585370 KNDC1Q76NI1 1749 aa14.09□□□□□ -0.15
LIG3-203ENST00000585370 MYBBP1AQ9BQG0 1328 aaKnown RBP14.09□□□□□ -0.15
LIG3-203ENST00000585370 NPC1L1Q9UHC9 1359 aa14.09□□□□□ -0.15
LIG3-203ENST00000585370 ATRNO75882 1429 aa14.08□□□□□ -0.15
LIG3-203ENST00000585370 BCL9LQ86UU0 1499 aa14.08□□□□□ -0.16
LIG3-203ENST00000585370 BRD4O60885 1362 aaPredicted RBP14.08□□□□□ -0.16
LIG3-203ENST00000585370 KRT28Q7Z3Y7 464 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms