RNA–Protein interactions for RNA: ENST00000583800.1

SMCHD1-210, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-210ENST00000583800 MAMSTRQ6ZN01 415 aa12.09□□□□□ -0.47
SMCHD1-210ENST00000583800 BCANQ96GW7 911 aa12.09□□□□□ -0.47
SMCHD1-210ENST00000583800 TSPYL2Q9H2G4 693 aaPredicted RBP12.09□□□□□ -0.47
SMCHD1-210ENST00000583800 RIMS2Q9UQ26 1411 aa12.09□□□□□ -0.47
SMCHD1-210ENST00000583800 PLEKHG1Q9ULL1 1385 aa12.08□□□□□ -0.48
SMCHD1-210ENST00000583800 MSH6P52701 1360 aa12.07□□□□□ -0.48
SMCHD1-210ENST00000583800 SETD1AO15047 1707 aaKnown RBP12.07□□□□□ -0.48
SMCHD1-210ENST00000583800 PCDH10Q9P2E7 1040 aa12.07□□□□□ -0.48
SMCHD1-210ENST00000583800 CCDC61Q9Y6R9 512 aa12.07□□□□□ -0.48
SMCHD1-210ENST00000583800 IQGAP3Q86VI3 1631 aa12.07□□□□□ -0.48
SMCHD1-210ENST00000583800 PPP1R15AO75807 674 aaPredicted RBP12.06□□□□□ -0.48
SMCHD1-210ENST00000583800 ATN1P54259 1190 aaPredicted RBP12.06□□□□□ -0.48
SMCHD1-210ENST00000583800 COL16A1Q07092 1604 aaPredicted RBP12.05□□□□□ -0.48
SMCHD1-210ENST00000583800 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.05□□□□□ -0.48
SMCHD1-210ENST00000583800 CHGAP10645 457 aaKnown RBP12.04□□□□□ -0.48
SMCHD1-210ENST00000583800 POTEAQ6S8J7 498 aa12.04□□□□□ -0.48
SMCHD1-210ENST00000583800 DIP2AQ14689 1571 aa12.04□□□□□ -0.48
SMCHD1-210ENST00000583800 ADAMTS13Q76LX8 1427 aa12.03□□□□□ -0.48
SMCHD1-210ENST00000583800 NUTM2DQ5VT03 806 aaPredicted RBP12.03□□□□□ -0.48
SMCHD1-210ENST00000583800 PROM2Q8N271 834 aa12.03□□□□□ -0.48
SMCHD1-210ENST00000583800 PRKCSHP14314 528 aaPredicted RBP12.02□□□□□ -0.49
SMCHD1-210ENST00000583800 LCE2DQ5TA82 110 aaPredicted RBP12.02□□□□□ -0.49
SMCHD1-210ENST00000583800 KIF12Q96FN5 646 aa12.02□□□□□ -0.49
SMCHD1-210ENST00000583800 SLAIN2Q9P270 581 aa12.02□□□□□ -0.49
SMCHD1-210ENST00000583800 SPHKAPQ2M3C7 1700 aa12.02□□□□□ -0.49
SMCHD1-210ENST00000583800 ROCK1Q13464 1354 aa12.01□□□□□ -0.49
SMCHD1-210ENST00000583800 JCADQ9P266 1359 aa12.01□□□□□ -0.49
SMCHD1-210ENST00000583800 TRPM2O94759 1503 aa12.01□□□□□ -0.49
SMCHD1-210ENST00000583800 NRXN3Q9Y4C0 1643 aa12□□□□□ -0.49
SMCHD1-210ENST00000583800 HDGFP51858 240 aaKnown RBP12□□□□□ -0.49
SMCHD1-210ENST00000583800 SCUBE2Q9NQ36 999 aa12□□□□□ -0.49
SMCHD1-210ENST00000583800 TBX22Q9Y458 520 aa12□□□□□ -0.49
SMCHD1-210ENST00000583800 LRP6O75581 1613 aa12□□□□□ -0.49
SMCHD1-210ENST00000583800 AHDC1Q5TGY3 1603 aaPredicted RBP12□□□□□ -0.49
SMCHD1-210ENST00000583800 SHPRHQ149N8 1683 aa12□□□□□ -0.49
SMCHD1-210ENST00000583800 C14orf37Q86TY3 774 aa11.99□□□□□ -0.49
SMCHD1-210ENST00000583800 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.99□□□□□ -0.49
SMCHD1-210ENST00000583800 NCOA3Q9Y6Q9 1424 aa11.99□□□□□ -0.49
SMCHD1-210ENST00000583800 XRN1Q8IZH2 1706 aaKnown RBP11.98□□□□□ -0.49
SMCHD1-210ENST00000583800 PTPRUQ92729 1446 aa11.98□□□□□ -0.49
SMCHD1-210ENST00000583800 POTEFA5A3E0 1075 aa11.98□□□□□ -0.49
SMCHD1-210ENST00000583800 HAP1P54257 671 aaPredicted RBP11.98□□□□□ -0.49
SMCHD1-210ENST00000583800 FAM163AQ96GL9 167 aaPredicted RBP11.98□□□□□ -0.49
SMCHD1-210ENST00000583800 NUP155O75694 1391 aa11.97□□□□□ -0.49
SMCHD1-210ENST00000583800 PIK3R4Q99570 1358 aa11.97□□□□□ -0.49
SMCHD1-210ENST00000583800 BMP2KQ9NSY1 1161 aaPredicted RBP11.97□□□□□ -0.49
SMCHD1-210ENST00000583800 TRPC6Q9Y210 931 aa11.97□□□□□ -0.49
SMCHD1-210ENST00000583800 ITGAEP38570 1179 aa11.96□□□□□ -0.49
SMCHD1-210ENST00000583800 TAOK2Q9UL54 1235 aa11.96□□□□□ -0.49
SMCHD1-210ENST00000583800 SETBP1Q9Y6X0 1596 aa11.96□□□□□ -0.5
SMCHD1-210ENST00000583800 CADPS2Q86UW7 1296 aa11.95□□□□□ -0.5
SMCHD1-210ENST00000583800 CLTCL1P53675 1640 aa11.94□□□□□ -0.5
SMCHD1-210ENST00000583800 NHSL1Q5SYE7 1610 aa11.94□□□□□ -0.5
SMCHD1-210ENST00000583800 ATF3P18847 181 aa11.94□□□□□ -0.5
SMCHD1-210ENST00000583800 C19orf44Q9H6X5 657 aa11.94□□□□□ -0.5
SMCHD1-210ENST00000583800 AMOTL2Q9Y2J4 779 aa11.94□□□□□ -0.5
SMCHD1-210ENST00000583800 KIF1BO60333 1816 aa11.93□□□□□ -0.5
SMCHD1-210ENST00000583800 SPATA31A6Q5VVP1 1343 aa11.93□□□□□ -0.5
SMCHD1-210ENST00000583800 ASXL1Q8IXJ9 1541 aa11.93□□□□□ -0.5
SMCHD1-210ENST00000583800 NALCNQ8IZF0 1738 aa11.93□□□□□ -0.5
SMCHD1-210ENST00000583800 NEXMIFQ5QGS0 1516 aa11.92□□□□□ -0.5
SMCHD1-210ENST00000583800 MAP3K13O43283 966 aa11.92□□□□□ -0.5
SMCHD1-210ENST00000583800 TIE1P35590 1138 aa11.92□□□□□ -0.5
SMCHD1-210ENST00000583800 MEX3CQ5U5Q3 659 aaKnown RBP11.92□□□□□ -0.5
SMCHD1-210ENST00000583800 PPARGC1BQ86YN6 1023 aaKnown RBP11.92□□□□□ -0.5
SMCHD1-210ENST00000583800 DCCP43146 1447 aa11.92□□□□□ -0.5
SMCHD1-210ENST00000583800 BRINP3Q76B58 766 aa11.91□□□□□ -0.5
SMCHD1-210ENST00000583800 MST1RQ04912 1400 aa11.91□□□□□ -0.5
SMCHD1-210ENST00000583800 METP08581 1390 aa11.91□□□□□ -0.5
SMCHD1-210ENST00000583800 ZNF326Q5BKZ1 582 aaKnown RBP11.9□□□□□ -0.5
SMCHD1-210ENST00000583800 VSIG10Q8N0Z9 540 aa11.9□□□□□ -0.5
SMCHD1-210ENST00000583800 NUTM2BA6NNL0 878 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 NUTM2EB1AL46 878 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 ZNF772Q68DY9 489 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 NUTM2AQ8IVF1 878 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 TRIM52Q96A61 297 aa11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 FBXO3Q9UK99 471 aa11.88□□□□□ -0.51
SMCHD1-210ENST00000583800 SETD5Q9C0A6 1442 aa11.87□□□□□ -0.51
SMCHD1-210ENST00000583800 ADGRL3Q9HAR2 1447 aa11.87□□□□□ -0.51
SMCHD1-210ENST00000583800 PLEKHG5O94827 1062 aa11.86□□□□□ -0.51
SMCHD1-210ENST00000583800 MIER1Q8N108 512 aa11.86□□□□□ -0.51
SMCHD1-210ENST00000583800 DDX17Q92841 729 aaKnown RBP11.85□□□□□ -0.51
SMCHD1-210ENST00000583800 COLQQ9Y215 455 aaPredicted RBP11.85□□□□□ -0.51
SMCHD1-210ENST00000583800 PPLO60437 1756 aa11.84□□□□□ -0.51
SMCHD1-210ENST00000583800 TTLL13PA6NNM8 815 aa11.84□□□□□ -0.51
SMCHD1-210ENST00000583800 UPF1Q92900 1129 aaKnown RBP eCLIP11.84□□□□□ -0.51
SMCHD1-210ENST00000583800 NAIPQ13075 1403 aa11.84□□□□□ -0.51
SMCHD1-210ENST00000583800 RRBP1Q9P2E9 1410 aaKnown RBP11.84□□□□□ -0.51
SMCHD1-210ENST00000583800 AFF2P51816 1311 aa11.84□□□□□ -0.51
SMCHD1-210ENST00000583800 LAMC1P11047 1609 aa11.83□□□□□ -0.52
SMCHD1-210ENST00000583800 PNPLA6Q8IY17 1366 aa11.83□□□□□ -0.52
SMCHD1-210ENST00000583800 RXRBP28702 533 aa11.83□□□□□ -0.52
SMCHD1-210ENST00000583800 PTCH1Q13635 1447 aa11.83□□□□□ -0.52
SMCHD1-210ENST00000583800 C1orf167Q5SNV9 1468 aa11.83□□□□□ -0.52
SMCHD1-210ENST00000583800 CDK12Q9NYV4 1490 aaPredicted RBP11.83□□□□□ -0.52
SMCHD1-210ENST00000583800 SEC24BO95487 1268 aa11.82□□□□□ -0.52
SMCHD1-210ENST00000583800 LRRC59Q96AG4 307 aaKnown RBP11.81□□□□□ -0.52
SMCHD1-210ENST00000583800 ROBO2Q9HCK4 1378 aa11.8□□□□□ -0.52
SMCHD1-210ENST00000583800 RGS12O14924 1447 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms