RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PIP4K2BP78356 416 aa9.15□□□□□ -0.94
VPS53-219ENST00000576019 BANK1Q8NDB2 785 aa9.15□□□□□ -0.94
VPS53-219ENST00000576019 POM121CA8CG34 1229 aa9.14□□□□□ -0.95
VPS53-219ENST00000576019 PDE4CQ08493 712 aa9.14□□□□□ -0.95
VPS53-219ENST00000576019 FBXO31Q5XUX0 539 aaPredicted RBP9.14□□□□□ -0.95
VPS53-219ENST00000576019 MAMSTRQ6ZN01 415 aa9.14□□□□□ -0.95
VPS53-219ENST00000576019 GLMNQ92990 594 aa9.14□□□□□ -0.95
VPS53-219ENST00000576019 PATL2C9JE40 543 aaKnown RBP9.13□□□□□ -0.95
VPS53-219ENST00000576019 NLRP7Q8WX94 980 aa9.13□□□□□ -0.95
VPS53-219ENST00000576019 OTUD5Q96G74 571 aa9.13□□□□□ -0.95
VPS53-219ENST00000576019 FAM217BQ9NTX9 383 aaPredicted RBP9.13□□□□□ -0.95
VPS53-219ENST00000576019 ABCA10Q8WWZ4 1543 aa9.13□□□□□ -0.95
VPS53-219ENST00000576019 ZNF335Q9H4Z2 1342 aaPredicted RBP9.12□□□□□ -0.95
VPS53-219ENST00000576019 ABL2P42684 1182 aa9.12□□□□□ -0.95
VPS53-219ENST00000576019 KCNA1Q09470 495 aa9.12□□□□□ -0.95
VPS53-219ENST00000576019 MTMR14Q8NCE2 650 aa9.12□□□□□ -0.95
VPS53-219ENST00000576019 UHRF1BP1LA0JNW5 1464 aa9.12□□□□□ -0.95
VPS53-219ENST00000576019 UHRF1BP1Q6BDS2 1440 aa9.12□□□□□ -0.95
VPS53-219ENST00000576019 CD109Q6YHK3 1445 aa9.12□□□□□ -0.95
VPS53-219ENST00000576019 WWC1Q8IX03 1113 aa9.11□□□□□ -0.95
VPS53-219ENST00000576019 FER1L4A9Z1Z3 1794 aa9.1□□□□□ -0.95
VPS53-219ENST00000576019 TOM1O60784 492 aa9.1□□□□□ -0.95
VPS53-219ENST00000576019 KDM5BQ9UGL1 1544 aa9.1□□□□□ -0.95
VPS53-219ENST00000576019 PTPRGP23470 1445 aa9.09□□□□□ -0.95
VPS53-219ENST00000576019 NCOA1Q15788 1441 aa9.09□□□□□ -0.95
VPS53-219ENST00000576019 KIF3CO14782 793 aa9.09□□□□□ -0.95
VPS53-219ENST00000576019 SLC34A2O95436 690 aa9.09□□□□□ -0.95
VPS53-219ENST00000576019 BRD1O95696 1058 aa9.09□□□□□ -0.95
VPS53-219ENST00000576019 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.08□□□□□ -0.96
VPS53-219ENST00000576019 EVI5O60447 810 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 FAM161AQ3B820 660 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 PBXIP1Q96AQ6 731 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 RBM33Q96EV2 1170 aaKnown RBP9.08□□□□□ -0.96
VPS53-219ENST00000576019 TBC1D2Q9BYX2 928 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 SCUBE2Q9NQ36 999 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 NPDC1Q9NQX5 325 aaPredicted RBP9.08□□□□□ -0.96
VPS53-219ENST00000576019 CUX1P39880 1505 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 ARHGEF40Q8TER5 1519 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 KIAA0556O60303 1618 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 CCDC88BA6NC98 1476 aa9.08□□□□□ -0.96
VPS53-219ENST00000576019 ALKQ9UM73 1620 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 CARNS1A5YM72 827 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 RFX1P22670 979 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 TMEM259Q4ZIN3 620 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 L3MBTL3Q96JM7 780 aaPredicted RBP9.07□□□□□ -0.96
VPS53-219ENST00000576019 LIMD1Q9UGP4 676 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 TBC1D2BQ9UPU7 963 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 SETBP1Q9Y6X0 1596 aa9.07□□□□□ -0.96
VPS53-219ENST00000576019 POGZQ7Z3K3 1410 aa9.06□□□□□ -0.96
VPS53-219ENST00000576019 CCDC27Q2M243 656 aa9.06□□□□□ -0.96
VPS53-219ENST00000576019 USTQ9Y2C2 406 aa9.06□□□□□ -0.96
VPS53-219ENST00000576019 WDR7Q9Y4E6 1490 aa9.06□□□□□ -0.96
VPS53-219ENST00000576019 FRMPD1Q5SYB0 1578 aa9.05□□□□□ -0.96
VPS53-219ENST00000576019 CSB-PGBD3P0DP91 1061 aa9.05□□□□□ -0.96
VPS53-219ENST00000576019 MYT1LQ9UL68 1186 aa9.05□□□□□ -0.96
VPS53-219ENST00000576019 IVNS1ABPQ9Y6Y0 642 aa9.05□□□□□ -0.96
VPS53-219ENST00000576019 ZCCHC11Q5TAX3 1644 aaKnown RBP9.05□□□□□ -0.96
VPS53-219ENST00000576019 MAP3K7O43318 606 aa9.04□□□□□ -0.96
VPS53-219ENST00000576019 SETD1BQ9UPS6 1966 aaKnown RBP9.04□□□□□ -0.96
VPS53-219ENST00000576019 FANCAO15360 1455 aa9.03□□□□□ -0.96
VPS53-219ENST00000576019 EN1Q05925 392 aaPredicted RBP9.03□□□□□ -0.96
VPS53-219ENST00000576019 PPP2R2DQ66LE6 453 aa9.03□□□□□ -0.96
VPS53-219ENST00000576019 METTL3Q86U44 580 aaKnown RBP9.03□□□□□ -0.96
VPS53-219ENST00000576019 SIGLEC1Q9BZZ2 1709 aa9.02□□□□□ -0.96
VPS53-219ENST00000576019 PCDH10Q9P2E7 1040 aa9.02□□□□□ -0.97
VPS53-219ENST00000576019 USP35Q9P2H5 1018 aa9.02□□□□□ -0.97
VPS53-219ENST00000576019 RAPGEF3O95398 923 aa9.01□□□□□ -0.97
VPS53-219ENST00000576019 TMEM121BQ9BXQ6 578 aaPredicted RBP9.01□□□□□ -0.97
VPS53-219ENST00000576019 PRM3Q9NNZ6 103 aa9.01□□□□□ -0.97
VPS53-219ENST00000576019 AMOTL2Q9Y2J4 779 aa9.01□□□□□ -0.97
VPS53-219ENST00000576019 BOLA1Q9Y3E2 137 aa9.01□□□□□ -0.97
VPS53-219ENST00000576019 PHLDB1Q86UU1 1377 aa9□□□□□ -0.97
VPS53-219ENST00000576019 UACAQ9BZF9 1416 aa9□□□□□ -0.97
VPS53-219ENST00000576019 TSR1Q2NL82 804 aaKnown RBP9□□□□□ -0.97
VPS53-219ENST00000576019 CFAP70Q5T0N1 1121 aa9□□□□□ -0.97
VPS53-219ENST00000576019 SND1Q7KZF4 910 aaKnown RBP eCLIP9□□□□□ -0.97
VPS53-219ENST00000576019 ADAMTS19Q8TE59 1207 aa9□□□□□ -0.97
VPS53-219ENST00000576019 PTPRKQ15262 1439 aa8.99□□□□□ -0.97
VPS53-219ENST00000576019 CSPP1Q1MSJ5 1256 aa8.99□□□□□ -0.97
VPS53-219ENST00000576019 HDGFL1Q5TGJ6 251 aa8.99□□□□□ -0.97
VPS53-219ENST00000576019 RIC3Q7Z5B4 369 aa8.99□□□□□ -0.97
VPS53-219ENST00000576019 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.99□□□□□ -0.97
VPS53-219ENST00000576019 ERICH3Q5RHP9 1530 aa8.99□□□□□ -0.97
VPS53-219ENST00000576019 ARHGEF12Q9NZN5 1544 aa8.99□□□□□ -0.97
VPS53-219ENST00000576019 G3V3G9 751 aa8.98□□□□□ -0.97
VPS53-219ENST00000576019 DIXDC1Q155Q3 683 aa8.98□□□□□ -0.97
VPS53-219ENST00000576019 C3orf67Q6ZVT6 689 aa8.98□□□□□ -0.97
VPS53-219ENST00000576019 TNIKQ9UKE5 1360 aa8.98□□□□□ -0.97
VPS53-219ENST00000576019 AP1G2O75843 785 aa8.97□□□□□ -0.97
VPS53-219ENST00000576019 OATP04181 439 aa8.97□□□□□ -0.97
VPS53-219ENST00000576019 CEBPAP49715 358 aaPredicted RBP8.97□□□□□ -0.97
VPS53-219ENST00000576019 LRP5O75197 1615 aa8.97□□□□□ -0.97
VPS53-219ENST00000576019 SRPK2P78362 688 aaKnown RBP8.96□□□□□ -0.98
VPS53-219ENST00000576019 SLAIN1Q8ND83 568 aa8.96□□□□□ -0.98
VPS53-219ENST00000576019 PXYLP1Q8TE99 480 aa8.96□□□□□ -0.98
VPS53-219ENST00000576019 CPS1P31327 1500 aa8.95□□□□□ -0.98
VPS53-219ENST00000576019 SENP3-EIF4A1A0A087X0R7 540 aa8.95□□□□□ -0.98
VPS53-219ENST00000576019 UNCXA6NJT0 531 aa8.95□□□□□ -0.98
VPS53-219ENST00000576019 PADI6Q6TGC4 694 aa8.95□□□□□ -0.98
VPS53-219ENST00000576019 TMEM92Q6UXU6 159 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms