RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 GBP4Q96PP9 640 aa18.1■□□□□ 0.49
SMG6-215ENST00000574501 ARHGEF5Q12774 1597 aa18.1■□□□□ 0.49
SMG6-215ENST00000574501 FTSJ3Q8IY81 847 aaKnown RBP18.1■□□□□ 0.49
SMG6-215ENST00000574501 NCOA3Q9Y6Q9 1424 aa18.09■□□□□ 0.49
SMG6-215ENST00000574501 MYOM1P52179 1685 aa18.09■□□□□ 0.49
SMG6-215ENST00000574501 CARMIL2Q6F5E8 1435 aa18.08■□□□□ 0.49
SMG6-215ENST00000574501 NASPP49321 788 aaPredicted RBP18.08■□□□□ 0.49
SMG6-215ENST00000574501 ATP10BO94823 1461 aa18.08■□□□□ 0.48
SMG6-215ENST00000574501 CCDC173Q0VFZ6 552 aa18.08■□□□□ 0.48
SMG6-215ENST00000574501 RAB3GAP1Q15042 981 aa18.08■□□□□ 0.48
SMG6-215ENST00000574501 SKOR2Q2VWA4 1001 aaPredicted RBP18.07■□□□□ 0.48
SMG6-215ENST00000574501 ZSCAN30Q86W11 494 aa18.07■□□□□ 0.48
SMG6-215ENST00000574501 SMC5Q8IY18 1101 aa18.07■□□□□ 0.48
SMG6-215ENST00000574501 IQGAP1P46940 1657 aa18.07■□□□□ 0.48
SMG6-215ENST00000574501 RIPK4P57078 832 aa18.07■□□□□ 0.48
SMG6-215ENST00000574501 RUNDC1Q96C34 613 aa18.07■□□□□ 0.48
SMG6-215ENST00000574501 SCAF11Q99590 1463 aaKnown RBP18.06■□□□□ 0.48
SMG6-215ENST00000574501 DZIP1LQ8IYY4 767 aaKnown RBP18.06■□□□□ 0.48
SMG6-215ENST00000574501 OFD1O75665 1012 aa18.06■□□□□ 0.48
SMG6-215ENST00000574501 MSNP26038 577 aaKnown RBP18.06■□□□□ 0.48
SMG6-215ENST00000574501 SAMD9LQ8IVG5 1584 aa18.05■□□□□ 0.48
SMG6-215ENST00000574501 SNX21Q969T3 373 aa18.05■□□□□ 0.48
SMG6-215ENST00000574501 PPP1R9BQ96SB3 815 aa18.05■□□□□ 0.48
SMG6-215ENST00000574501 FAM13BQ9NYF5 915 aa18.05■□□□□ 0.48
SMG6-215ENST00000574501 UNC13BO14795 1591 aa18.05■□□□□ 0.48
SMG6-215ENST00000574501 ZKSCAN2Q63HK3 967 aa18.04■□□□□ 0.48
SMG6-215ENST00000574501 SHROOM2Q13796 1616 aa18.04■□□□□ 0.48
SMG6-215ENST00000574501 CD2BP2O95400 341 aaKnown RBP18.04■□□□□ 0.48
SMG6-215ENST00000574501 RBM25P49756 843 aaKnown RBP18.04■□□□□ 0.48
SMG6-215ENST00000574501 CALD1Q05682 793 aaKnown RBP18.03■□□□□ 0.48
SMG6-215ENST00000574501 ANP32BQ92688 251 aaKnown RBP18.03■□□□□ 0.48
SMG6-215ENST00000574501 CIZ1Q9ULV3 898 aaPredicted RBP18.03■□□□□ 0.48
SMG6-215ENST00000574501 R3HCC1Q9Y3T6 440 aaKnown RBP18.03■□□□□ 0.48
SMG6-215ENST00000574501 ITPRIPQ8IWB1 547 aa18.03■□□□□ 0.48
SMG6-215ENST00000574501 WDR63Q8IWG1 891 aa18.03■□□□□ 0.48
SMG6-215ENST00000574501 MADDQ8WXG6 1647 aa18.03■□□□□ 0.48
SMG6-215ENST00000574501 POLR3AO14802 1390 aaPredicted RBP18.02■□□□□ 0.48
SMG6-215ENST00000574501 SSFA2P28290 1259 aa18.02■□□□□ 0.48
SMG6-215ENST00000574501 ARID3AQ99856 593 aa18.02■□□□□ 0.48
SMG6-215ENST00000574501 ABCA8O94911 1581 aa18.02■□□□□ 0.48
SMG6-215ENST00000574501 PRDM4Q9UKN5 801 aa18.02■□□□□ 0.47
SMG6-215ENST00000574501 RSPH4AQ5TD94 716 aa18.01■□□□□ 0.47
SMG6-215ENST00000574501 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.01■□□□□ 0.47
SMG6-215ENST00000574501 ERCC6L2Q5T890 1561 aa18.01■□□□□ 0.47
SMG6-215ENST00000574501 PHF23Q9BUL5 403 aaPredicted RBP18.01■□□□□ 0.47
SMG6-215ENST00000574501 DDX49Q9Y6V7 483 aaKnown RBP18.01■□□□□ 0.47
SMG6-215ENST00000574501 IQGAP3Q86VI3 1631 aa18.01■□□□□ 0.47
SMG6-215ENST00000574501 HDAC1Q13547 482 aaPredicted RBP18■□□□□ 0.47
SMG6-215ENST00000574501 TSR2Q969E8 191 aaKnown RBP18■□□□□ 0.47
SMG6-215ENST00000574501 ATP10AO60312 1499 aa18■□□□□ 0.47
SMG6-215ENST00000574501 MORC1Q86VD1 984 aa18■□□□□ 0.47
SMG6-215ENST00000574501 RBM42Q9BTD8 480 aaKnown RBP18■□□□□ 0.47
SMG6-215ENST00000574501 LNPKQ9C0E8 428 aa18■□□□□ 0.47
SMG6-215ENST00000574501 PODXL2Q9NZ53 605 aa18■□□□□ 0.47
SMG6-215ENST00000574501 SYCP2Q9BX26 1530 aa18■□□□□ 0.47
SMG6-215ENST00000574501 TRIM27P14373 513 aa17.99■□□□□ 0.47
SMG6-215ENST00000574501 KIF2CQ99661 725 aa17.99■□□□□ 0.47
SMG6-215ENST00000574501 SMC4Q9NTJ3 1288 aa17.99■□□□□ 0.47
SMG6-215ENST00000574501 KDM5AP29375 1690 aaKnown RBP17.99■□□□□ 0.47
SMG6-215ENST00000574501 PTMSP20962 102 aa17.98■□□□□ 0.47
SMG6-215ENST00000574501 SCAPERQ9BY12 1400 aa17.98■□□□□ 0.47
SMG6-215ENST00000574501 CDC42BPBQ9Y5S2 1711 aa17.98■□□□□ 0.47
SMG6-215ENST00000574501 NCLP19338 710 aaKnown RBP17.97■□□□□ 0.47
SMG6-215ENST00000574501 XPCQ01831 940 aaPredicted RBP17.97■□□□□ 0.47
SMG6-215ENST00000574501 CEP152O94986 1710 aa17.96■□□□□ 0.47
SMG6-215ENST00000574501 IQSEC2Q5JU85 1478 aa17.96■□□□□ 0.47
SMG6-215ENST00000574501 GOLGA6L22H0YM25 854 aa17.96■□□□□ 0.47
SMG6-215ENST00000574501 GAS2L2Q8NHY3 880 aa17.96■□□□□ 0.47
SMG6-215ENST00000574501 K7ELQ4 463 aaPredicted RBP17.96■□□□□ 0.46
SMG6-215ENST00000574501 DDX19BQ9UMR2 479 aa17.96■□□□□ 0.46
SMG6-215ENST00000574501 KLHL40Q2TBA0 621 aa17.95■□□□□ 0.46
SMG6-215ENST00000574501 CFAP70Q5T0N1 1121 aa17.95■□□□□ 0.46
SMG6-215ENST00000574501 SHPRHQ149N8 1683 aa17.95■□□□□ 0.46
SMG6-215ENST00000574501 ERVK-7P63135 1459 aa17.95■□□□□ 0.46
SMG6-215ENST00000574501 BAG4O95429 457 aaKnown RBP17.94■□□□□ 0.46
SMG6-215ENST00000574501 UQCRHLA0A096LP55 91 aa17.94■□□□□ 0.46
SMG6-215ENST00000574501 UQCRHP07919 91 aa17.94■□□□□ 0.46
SMG6-215ENST00000574501 MTHFSP49914 203 aa17.94■□□□□ 0.46
SMG6-215ENST00000574501 EXOSC9Q06265 439 aaKnown RBP17.94■□□□□ 0.46
SMG6-215ENST00000574501 SSH1Q8WYL5 1049 aa17.94■□□□□ 0.46
SMG6-215ENST00000574501 NUCB1Q02818 461 aa17.93■□□□□ 0.46
SMG6-215ENST00000574501 TMEM57Q8N5G2 664 aa17.93■□□□□ 0.46
SMG6-215ENST00000574501 NOB1Q9ULX3 412 aaKnown RBP17.93■□□□□ 0.46
SMG6-215ENST00000574501 TERF1P54274 439 aa17.93■□□□□ 0.46
SMG6-215ENST00000574501 CCDC27Q2M243 656 aa17.93■□□□□ 0.46
SMG6-215ENST00000574501 CAVIN1Q6NZI2 390 aaKnown RBP17.93■□□□□ 0.46
SMG6-215ENST00000574501 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.93■□□□□ 0.46
SMG6-215ENST00000574501 MCTP1Q6DN14 999 aa17.92■□□□□ 0.46
SMG6-215ENST00000574501 ATF7IPQ6VMQ6 1270 aa17.92■□□□□ 0.46
SMG6-215ENST00000574501 MAST1Q9Y2H9 1570 aa17.92■□□□□ 0.46
SMG6-215ENST00000574501 NSD3Q9BZ95 1437 aa17.91■□□□□ 0.46
SMG6-215ENST00000574501 CHD1LQ86WJ1 897 aa17.91■□□□□ 0.46
SMG6-215ENST00000574501 RBSNQ9H1K0 784 aa17.91■□□□□ 0.46
SMG6-215ENST00000574501 PREX2Q70Z35 1606 aa17.91■□□□□ 0.46
SMG6-215ENST00000574501 PLEKHG5O94827 1062 aa17.91■□□□□ 0.46
SMG6-215ENST00000574501 U2AF1L5P0DN76 240 aaPredicted RBP17.91■□□□□ 0.46
SMG6-215ENST00000574501 U2AF1Q01081 240 aaKnown RBP eCLIP17.91■□□□□ 0.46
SMG6-215ENST00000574501 ZBTB40Q9NUA8 1239 aa17.91■□□□□ 0.46
SMG6-215ENST00000574501 NOL7Q9UMY1 257 aaKnown RBP17.91■□□□□ 0.46
SMG6-215ENST00000574501 AK9Q5TCS8 1911 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms