RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZRANB1Q9UGI0 708 aa12.02□□□□□ -0.49
VPS53-214ENST00000572607 NUTM2DQ5VT03 806 aaPredicted RBP12.01□□□□□ -0.49
VPS53-214ENST00000572607 MPHOSPH9Q99550 1183 aa11.99□□□□□ -0.49
VPS53-214ENST00000572607 TBX22Q9Y458 520 aa11.99□□□□□ -0.49
VPS53-214ENST00000572607 SHPRHQ149N8 1683 aa11.98□□□□□ -0.49
VPS53-214ENST00000572607 CLTCL1P53675 1640 aa11.98□□□□□ -0.49
VPS53-214ENST00000572607 PROSER2Q86WR7 435 aaPredicted RBP11.98□□□□□ -0.49
VPS53-214ENST00000572607 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.97□□□□□ -0.49
VPS53-214ENST00000572607 AHDC1Q5TGY3 1603 aaPredicted RBP11.97□□□□□ -0.49
VPS53-214ENST00000572607 DIP2AQ14689 1571 aa11.97□□□□□ -0.49
VPS53-214ENST00000572607 CCDC144AA2RUR9 1427 aa11.97□□□□□ -0.49
VPS53-214ENST00000572607 RAB3GAP2Q9H2M9 1393 aa11.97□□□□□ -0.49
VPS53-214ENST00000572607 PIK3R4Q99570 1358 aa11.96□□□□□ -0.49
VPS53-214ENST00000572607 JCADQ9P266 1359 aa11.96□□□□□ -0.49
VPS53-214ENST00000572607 RPGRIP1LQ68CZ1 1315 aa11.96□□□□□ -0.49
VPS53-214ENST00000572607 ADAMTS13Q76LX8 1427 aa11.95□□□□□ -0.5
VPS53-214ENST00000572607 VGFO15240 615 aaPredicted RBP11.95□□□□□ -0.5
VPS53-214ENST00000572607 MSH6P52701 1360 aa11.94□□□□□ -0.5
VPS53-214ENST00000572607 C14orf37Q86TY3 774 aa11.94□□□□□ -0.5
VPS53-214ENST00000572607 PROM2Q8N271 834 aa11.94□□□□□ -0.5
VPS53-214ENST00000572607 SLAIN2Q9P270 581 aa11.94□□□□□ -0.5
VPS53-214ENST00000572607 KIF1BO60333 1816 aa11.94□□□□□ -0.5
VPS53-214ENST00000572607 NEXMIFQ5QGS0 1516 aa11.93□□□□□ -0.5
VPS53-214ENST00000572607 MNX1P50219 401 aaPredicted RBP11.93□□□□□ -0.5
VPS53-214ENST00000572607 DCBLD2Q96PD2 775 aa11.93□□□□□ -0.5
VPS53-214ENST00000572607 SETBP1Q9Y6X0 1596 aa11.92□□□□□ -0.5
VPS53-214ENST00000572607 UPF1Q92900 1129 aaKnown RBP eCLIP11.92□□□□□ -0.5
VPS53-214ENST00000572607 NRXN3Q9Y4C0 1643 aa11.91□□□□□ -0.5
VPS53-214ENST00000572607 PAK3O75914 559 aaPredicted RBP11.91□□□□□ -0.5
VPS53-214ENST00000572607 HRCP23327 699 aa11.91□□□□□ -0.5
VPS53-214ENST00000572607 AMOTL2Q9Y2J4 779 aa11.91□□□□□ -0.5
VPS53-214ENST00000572607 NHSL1Q5SYE7 1610 aa11.9□□□□□ -0.5
VPS53-214ENST00000572607 XRN1Q8IZH2 1706 aaKnown RBP11.9□□□□□ -0.5
VPS53-214ENST00000572607 PTPRUQ92729 1446 aa11.9□□□□□ -0.5
VPS53-214ENST00000572607 NCOA3Q9Y6Q9 1424 aa11.9□□□□□ -0.5
VPS53-214ENST00000572607 RGL3Q3MIN7 710 aa11.89□□□□□ -0.51
VPS53-214ENST00000572607 ANKRD30BQ9BXX2 1392 aa11.89□□□□□ -0.51
VPS53-214ENST00000572607 SPATA31A6Q5VVP1 1343 aa11.88□□□□□ -0.51
VPS53-214ENST00000572607 SRCAPQ6ZRS2 3230 aa11.88□□□□□ -0.51
VPS53-214ENST00000572607 ATF3P18847 181 aa11.87□□□□□ -0.51
VPS53-214ENST00000572607 CADPS2Q86UW7 1296 aa11.87□□□□□ -0.51
VPS53-214ENST00000572607 METP08581 1390 aa11.87□□□□□ -0.51
VPS53-214ENST00000572607 CDK12Q9NYV4 1490 aaPredicted RBP11.87□□□□□ -0.51
VPS53-214ENST00000572607 SPATA31E1Q6ZUB1 1445 aa11.86□□□□□ -0.51
VPS53-214ENST00000572607 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
VPS53-214ENST00000572607 C19orf44Q9H6X5 657 aa11.86□□□□□ -0.51
VPS53-214ENST00000572607 ASXL1Q8IXJ9 1541 aa11.86□□□□□ -0.51
VPS53-214ENST00000572607 PPLO60437 1756 aa11.84□□□□□ -0.51
VPS53-214ENST00000572607 NALCNQ8IZF0 1738 aa11.83□□□□□ -0.52
VPS53-214ENST00000572607 BRINP3Q76B58 766 aa11.83□□□□□ -0.52
VPS53-214ENST00000572607 MST1RQ04912 1400 aa11.83□□□□□ -0.52
VPS53-214ENST00000572607 ADGRF5Q8IZF2 1346 aa11.83□□□□□ -0.52
VPS53-214ENST00000572607 ZNF772Q68DY9 489 aaPredicted RBP11.82□□□□□ -0.52
VPS53-214ENST00000572607 PHF12Q96QT6 1004 aa11.82□□□□□ -0.52
VPS53-214ENST00000572607 RGS12O14924 1447 aa11.82□□□□□ -0.52
VPS53-214ENST00000572607 DCCP43146 1447 aa11.82□□□□□ -0.52
VPS53-214ENST00000572607 PTCH1Q13635 1447 aa11.82□□□□□ -0.52
VPS53-214ENST00000572607 LAMC1P11047 1609 aa11.82□□□□□ -0.52
VPS53-214ENST00000572607 PIK3C2GO75747 1445 aa11.8□□□□□ -0.52
VPS53-214ENST00000572607 ADGRL3Q9HAR2 1447 aa11.8□□□□□ -0.52
VPS53-214ENST00000572607 MYOM2P54296 1465 aa11.8□□□□□ -0.52
VPS53-214ENST00000572607 EP400Q96L91 3159 aa11.79□□□□□ -0.52
VPS53-214ENST00000572607 AFF2P51816 1311 aa11.79□□□□□ -0.52
VPS53-214ENST00000572607 PRAG1Q86YV5 1406 aa11.78□□□□□ -0.52
VPS53-214ENST00000572607 IFT172Q9UG01 1749 aa11.78□□□□□ -0.52
VPS53-214ENST00000572607 RXRBP28702 533 aa11.78□□□□□ -0.52
VPS53-214ENST00000572607 MEX3CQ5U5Q3 659 aaKnown RBP11.78□□□□□ -0.52
VPS53-214ENST00000572607 STK26Q9P289 416 aa11.78□□□□□ -0.52
VPS53-214ENST00000572607 PNPLA6Q8IY17 1366 aa11.78□□□□□ -0.52
VPS53-214ENST00000572607 ROBO2Q9HCK4 1378 aa11.78□□□□□ -0.52
VPS53-214ENST00000572607 STAC3Q96MF2 364 aa11.77□□□□□ -0.53
VPS53-214ENST00000572607 LRPPRCP42704 1394 aaKnown RBP11.77□□□□□ -0.53
VPS53-214ENST00000572607 NUTM2BA6NNL0 878 aaPredicted RBP11.76□□□□□ -0.53
VPS53-214ENST00000572607 NUTM2EB1AL46 878 aaPredicted RBP11.76□□□□□ -0.53
VPS53-214ENST00000572607 TMEM132EQ6IEE7 984 aa11.76□□□□□ -0.53
VPS53-214ENST00000572607 NUTM2AQ8IVF1 878 aaPredicted RBP11.76□□□□□ -0.53
VPS53-214ENST00000572607 DCAF11Q8TEB1 546 aa11.76□□□□□ -0.53
VPS53-214ENST00000572607 DDX17Q92841 729 aaKnown RBP11.76□□□□□ -0.53
VPS53-214ENST00000572607 C14orf93Q9H972 538 aaKnown RBP11.76□□□□□ -0.53
VPS53-214ENST00000572607 KDM2AQ9Y2K7 1162 aa11.76□□□□□ -0.53
VPS53-214ENST00000572607 DHX57Q6P158 1386 aaKnown RBP11.76□□□□□ -0.53
VPS53-214ENST00000572607 NRXN1Q9ULB1 1477 aa11.76□□□□□ -0.53
VPS53-214ENST00000572607 CFAP70Q5T0N1 1121 aa11.75□□□□□ -0.53
VPS53-214ENST00000572607 ABCC11Q96J66 1382 aa11.75□□□□□ -0.53
VPS53-214ENST00000572607 TECPR2O15040 1411 aa11.75□□□□□ -0.53
VPS53-214ENST00000572607 YTHDC2Q9H6S0 1430 aaKnown RBP11.75□□□□□ -0.53
VPS53-214ENST00000572607 COL22A1Q8NFW1 1626 aaPredicted RBP11.73□□□□□ -0.53
VPS53-214ENST00000572607 TRIM26Q12899 539 aaPredicted RBP11.72□□□□□ -0.53
VPS53-214ENST00000572607 WAPLQ7Z5K2 1190 aa11.72□□□□□ -0.53
VPS53-214ENST00000572607 MARF1Q9Y4F3 1742 aaKnown RBP11.72□□□□□ -0.53
VPS53-214ENST00000572607 C1orf167Q5SNV9 1468 aa11.71□□□□□ -0.53
VPS53-214ENST00000572607 RBM6P78332 1123 aaKnown RBP11.71□□□□□ -0.53
VPS53-214ENST00000572607 SIRT1Q96EB6 747 aa11.71□□□□□ -0.53
VPS53-214ENST00000572607 POGKQ9P215 609 aa11.71□□□□□ -0.53
VPS53-214ENST00000572607 CDC42BPGQ6DT37 1551 aa11.71□□□□□ -0.54
VPS53-214ENST00000572607 KNDC1Q76NI1 1749 aa11.7□□□□□ -0.54
VPS53-214ENST00000572607 C8orf37Q96NL8 207 aa11.7□□□□□ -0.54
VPS53-214ENST00000572607 QTRT2Q9H974 415 aaKnown RBP11.7□□□□□ -0.54
VPS53-214ENST00000572607 PLEKHH1Q9ULM0 1364 aa11.69□□□□□ -0.54
VPS53-214ENST00000572607 SOS2Q07890 1332 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms