RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TRAK1Q9UPV9 953 aa13.73□□□□□ -0.21
CCDC40-207ENST00000572253 ZMYM3Q14202 1370 aa13.72□□□□□ -0.21
CCDC40-207ENST00000572253 ANO8Q9HCE9 1232 aaPredicted RBP13.72□□□□□ -0.21
CCDC40-207ENST00000572253 KIF1BO60333 1816 aa13.72□□□□□ -0.21
CCDC40-207ENST00000572253 ADGRL1O94910 1474 aa13.71□□□□□ -0.21
CCDC40-207ENST00000572253 USP19O94966 1318 aa13.71□□□□□ -0.21
CCDC40-207ENST00000572253 FTSJ3Q8IY81 847 aaKnown RBP13.71□□□□□ -0.21
CCDC40-207ENST00000572253 SLKQ9H2G2 1235 aaPredicted RBP13.71□□□□□ -0.21
CCDC40-207ENST00000572253 CCDC27Q2M243 656 aa13.71□□□□□ -0.22
CCDC40-207ENST00000572253 SLC12A5Q9H2X9 1139 aa13.71□□□□□ -0.22
CCDC40-207ENST00000572253 PDZRN3Q9UPQ7 1066 aa13.71□□□□□ -0.22
CCDC40-207ENST00000572253 INO80Q9ULG1 1556 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-207ENST00000572253 NOS1P29475 1434 aa13.7□□□□□ -0.22
CCDC40-207ENST00000572253 MTHFSP49914 203 aa13.7□□□□□ -0.22
CCDC40-207ENST00000572253 UGGT1Q9NYU2 1555 aa13.7□□□□□ -0.22
CCDC40-207ENST00000572253 BCL2L13Q9BXK5 485 aa13.69□□□□□ -0.22
CCDC40-207ENST00000572253 VIRMAQ69YN4 1812 aaKnown RBP13.69□□□□□ -0.22
CCDC40-207ENST00000572253 SEC24BO95487 1268 aa13.69□□□□□ -0.22
CCDC40-207ENST00000572253 U2AF1L5P0DN76 240 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-207ENST00000572253 U2AF1Q01081 240 aaKnown RBP eCLIP13.69□□□□□ -0.22
CCDC40-207ENST00000572253 NCBP3Q53F19 620 aaKnown RBP13.69□□□□□ -0.22
CCDC40-207ENST00000572253 L1TD1Q5T7N2 865 aaKnown RBP13.69□□□□□ -0.22
CCDC40-207ENST00000572253 ZKSCAN2Q63HK3 967 aa13.69□□□□□ -0.22
CCDC40-207ENST00000572253 EFCAB6Q5THR3 1501 aa13.68□□□□□ -0.22
CCDC40-207ENST00000572253 MYO3AQ8NEV4 1616 aa13.68□□□□□ -0.22
CCDC40-207ENST00000572253 C14orf93Q9H972 538 aaKnown RBP13.68□□□□□ -0.22
CCDC40-207ENST00000572253 PCDHB15Q9Y5E8 787 aa13.68□□□□□ -0.22
CCDC40-207ENST00000572253 NRXN1Q9ULB1 1477 aa13.68□□□□□ -0.22
CCDC40-207ENST00000572253 CT47B1P0C2W7 299 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-207ENST00000572253 PHF23Q9BUL5 403 aaPredicted RBP13.67□□□□□ -0.22
CCDC40-207ENST00000572253 SETBP1Q9Y6X0 1596 aa13.67□□□□□ -0.22
CCDC40-207ENST00000572253 TBC1D32Q96NH3 1257 aa13.67□□□□□ -0.22
CCDC40-207ENST00000572253 EVC2Q86UK5 1308 aa13.67□□□□□ -0.22
CCDC40-207ENST00000572253 RPGRIP1LQ68CZ1 1315 aa13.67□□□□□ -0.22
CCDC40-207ENST00000572253 MVPQ14764 893 aaKnown RBP13.66□□□□□ -0.22
CCDC40-207ENST00000572253 NSD2O96028 1365 aa13.66□□□□□ -0.22
CCDC40-207ENST00000572253 RLBP1P12271 317 aa13.66□□□□□ -0.22
CCDC40-207ENST00000572253 DZIP1LQ8IYY4 767 aaKnown RBP13.66□□□□□ -0.22
CCDC40-207ENST00000572253 IQSEC2Q5JU85 1478 aa13.66□□□□□ -0.22
CCDC40-207ENST00000572253 PUS7Q96PZ0 661 aaKnown RBP13.65□□□□□ -0.22
CCDC40-207ENST00000572253 ABCA9Q8IUA7 1624 aa13.65□□□□□ -0.22
CCDC40-207ENST00000572253 ZNF518AQ6AHZ1 1483 aa13.65□□□□□ -0.22
CCDC40-207ENST00000572253 FAM43AQ8N2R8 423 aa13.64□□□□□ -0.23
CCDC40-207ENST00000572253 TMEM132EQ6IEE7 984 aa13.64□□□□□ -0.23
CCDC40-207ENST00000572253 SMC4Q9NTJ3 1288 aa13.64□□□□□ -0.23
CCDC40-207ENST00000572253 MROH1Q8NDA8 1641 aa13.64□□□□□ -0.23
CCDC40-207ENST00000572253 POGKQ9P215 609 aa13.64□□□□□ -0.23
CCDC40-207ENST00000572253 TNNQ9UQP3 1299 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 ADGRB3O60242 1522 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 LMTK2Q8IWU2 1503 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 IFT172Q9UG01 1749 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 SHPRHQ149N8 1683 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 TBC1D2Q9BYX2 928 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 DDX19BQ9UMR2 479 aa13.63□□□□□ -0.23
CCDC40-207ENST00000572253 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.62□□□□□ -0.23
CCDC40-207ENST00000572253 ANKRD36BQ8N2N9 1353 aa13.62□□□□□ -0.23
CCDC40-207ENST00000572253 GGT6Q6P531 493 aa13.62□□□□□ -0.23
CCDC40-207ENST00000572253 U2SURPO15042 1029 aaKnown RBP13.61□□□□□ -0.23
CCDC40-207ENST00000572253 MROH2AA6NES4 1674 aa13.61□□□□□ -0.23
CCDC40-207ENST00000572253 PPRC1Q5VV67 1664 aaKnown RBP13.61□□□□□ -0.23
CCDC40-207ENST00000572253 VGFO15240 615 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-207ENST00000572253 QRICH2Q9H0J4 1663 aa13.61□□□□□ -0.23
CCDC40-207ENST00000572253 NLRP1Q9C000 1473 aa13.61□□□□□ -0.23
CCDC40-207ENST00000572253 ITPRIPQ8IWB1 547 aa13.61□□□□□ -0.23
CCDC40-207ENST00000572253 USP32Q8NFA0 1604 aa13.61□□□□□ -0.23
CCDC40-207ENST00000572253 C22orf23Q9BZE7 217 aa13.6□□□□□ -0.23
CCDC40-207ENST00000572253 ANTXR1Q9H6X2 564 aa13.6□□□□□ -0.23
CCDC40-207ENST00000572253 MFAP1P55081 439 aaKnown RBP13.6□□□□□ -0.23
CCDC40-207ENST00000572253 PNNQ9H307 717 aaKnown RBP13.6□□□□□ -0.23
CCDC40-207ENST00000572253 IPO8O15397 1037 aaKnown RBP13.59□□□□□ -0.23
CCDC40-207ENST00000572253 CHMP5Q9NZZ3 219 aa13.59□□□□□ -0.23
CCDC40-207ENST00000572253 HSCBQ8IWL3 235 aa13.59□□□□□ -0.23
CCDC40-207ENST00000572253 EXOSC9Q06265 439 aaKnown RBP13.58□□□□□ -0.23
CCDC40-207ENST00000572253 HDAC1Q13547 482 aaPredicted RBP13.58□□□□□ -0.23
CCDC40-207ENST00000572253 TSR2Q969E8 191 aaKnown RBP13.58□□□□□ -0.23
CCDC40-207ENST00000572253 NPATQ14207 1427 aa13.58□□□□□ -0.24
CCDC40-207ENST00000572253 ABCC11Q96J66 1382 aa13.58□□□□□ -0.24
CCDC40-207ENST00000572253 NPM1P06748 294 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC40-207ENST00000572253 RSPH6AQ9H0K4 717 aa13.57□□□□□ -0.24
CCDC40-207ENST00000572253 ATF7IPQ6VMQ6 1270 aa13.57□□□□□ -0.24
CCDC40-207ENST00000572253 SPRYD3Q8NCJ5 442 aa13.57□□□□□ -0.24
CCDC40-207ENST00000572253 CABP2Q9NPB3 220 aa13.57□□□□□ -0.24
CCDC40-207ENST00000572253 GOLGA6L3A6NEY3 463 aa13.57□□□□□ -0.24
CCDC40-207ENST00000572253 EIF5BO60841 1220 aaKnown RBP13.57□□□□□ -0.24
CCDC40-207ENST00000572253 TMPOP42166 694 aaKnown RBP13.57□□□□□ -0.24
CCDC40-207ENST00000572253 SRPK2P78362 688 aaKnown RBP13.57□□□□□ -0.24
CCDC40-207ENST00000572253 ADGRB1O14514 1584 aa13.57□□□□□ -0.24
CCDC40-207ENST00000572253 IL16Q14005 1332 aa13.56□□□□□ -0.24
CCDC40-207ENST00000572253 KIF16BQ96L93 1317 aa13.56□□□□□ -0.24
CCDC40-207ENST00000572253 MCM4P33991 863 aa13.56□□□□□ -0.24
CCDC40-207ENST00000572253 TERF2IPQ9NYB0 399 aa13.56□□□□□ -0.24
CCDC40-207ENST00000572253 TRIM27P14373 513 aa13.56□□□□□ -0.24
CCDC40-207ENST00000572253 ZC3H13Q5T200 1668 aaKnown RBP13.56□□□□□ -0.24
CCDC40-207ENST00000572253 ASXL2Q76L83 1435 aa13.55□□□□□ -0.24
CCDC40-207ENST00000572253 PPLO60437 1756 aa13.55□□□□□ -0.24
CCDC40-207ENST00000572253 SSH1Q8WYL5 1049 aa13.55□□□□□ -0.24
CCDC40-207ENST00000572253 KIDINS220Q9ULH0 1771 aa13.55□□□□□ -0.24
CCDC40-207ENST00000572253 SAFB2Q14151 953 aaKnown RBP eCLIP13.55□□□□□ -0.24
CCDC40-207ENST00000572253 CHMP4BQ9H444 224 aaKnown RBP13.55□□□□□ -0.24
CCDC40-207ENST00000572253 NUTM2DQ5VT03 806 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms