RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 CPS1P31327 1500 aa25.96■■□□□ 1.75
CLN3-233ENST00000568452 KNSTRNQ9Y448 316 aa25.93■■□□□ 1.74
CLN3-233ENST00000568452 MINK1Q8N4C8 1332 aaPredicted RBP25.93■■□□□ 1.74
CLN3-233ENST00000568452 CENPBP07199 599 aaPredicted RBP25.92■■□□□ 1.74
CLN3-233ENST00000568452 SLC26A8Q96RN1 970 aa25.92■■□□□ 1.74
CLN3-233ENST00000568452 NINLQ9Y2I6 1382 aa25.91■■□□□ 1.74
CLN3-233ENST00000568452 ATAD2Q6PL18 1390 aa25.9■■□□□ 1.74
CLN3-233ENST00000568452 WAPLQ7Z5K2 1190 aa25.9■■□□□ 1.74
CLN3-233ENST00000568452 SRPK2P78362 688 aaKnown RBP25.89■■□□□ 1.74
CLN3-233ENST00000568452 PIK3R4Q99570 1358 aa25.89■■□□□ 1.73
CLN3-233ENST00000568452 PLEKHH1Q9ULM0 1364 aa25.89■■□□□ 1.73
CLN3-233ENST00000568452 LMTK3Q96Q04 1460 aa25.88■■□□□ 1.73
CLN3-233ENST00000568452 PARD3Q8TEW0 1356 aa25.88■■□□□ 1.73
CLN3-233ENST00000568452 NPC1L1Q9UHC9 1359 aa25.87■■□□□ 1.73
CLN3-233ENST00000568452 TMC1Q8TDI8 760 aa25.87■■□□□ 1.73
CLN3-233ENST00000568452 CABP2Q9NPB3 220 aa25.87■■□□□ 1.73
CLN3-233ENST00000568452 CNGB1Q14028 1251 aaPredicted RBP25.86■■□□□ 1.73
CLN3-233ENST00000568452 MYBBP1AQ9BQG0 1328 aaKnown RBP25.86■■□□□ 1.73
CLN3-233ENST00000568452 MRS2Q9HD23 443 aa25.85■■□□□ 1.73
CLN3-233ENST00000568452 PTPRUQ92729 1446 aa25.85■■□□□ 1.73
CLN3-233ENST00000568452 CDK19Q9BWU1 502 aa25.85■■□□□ 1.73
CLN3-233ENST00000568452 ROBO2Q9HCK4 1378 aa25.84■■□□□ 1.73
CLN3-233ENST00000568452 SLC12A5Q9H2X9 1139 aa25.84■■□□□ 1.73
CLN3-233ENST00000568452 HSPA2P54652 639 aa25.83■■□□□ 1.73
CLN3-233ENST00000568452 AMOTL2Q9Y2J4 779 aa25.83■■□□□ 1.73
CLN3-233ENST00000568452 PTCH1Q13635 1447 aa25.83■■□□□ 1.73
CLN3-233ENST00000568452 AMER1Q5JTC6 1135 aaPredicted RBP25.82■■□□□ 1.72
CLN3-233ENST00000568452 CC2D1BQ5T0F9 858 aaKnown RBP25.82■■□□□ 1.72
CLN3-233ENST00000568452 ANKRD36BQ8N2N9 1353 aa25.81■■□□□ 1.72
CLN3-233ENST00000568452 BRD4O60885 1362 aaPredicted RBP25.8■■□□□ 1.72
CLN3-233ENST00000568452 WASLO00401 505 aaPredicted RBP25.8■■□□□ 1.72
CLN3-233ENST00000568452 NPHP4O75161 1426 aaPredicted RBP25.79■■□□□ 1.72
CLN3-233ENST00000568452 XRN1Q8IZH2 1706 aaKnown RBP25.78■■□□□ 1.72
CLN3-233ENST00000568452 CCDC184Q52MB2 194 aa25.78■■□□□ 1.72
CLN3-233ENST00000568452 CARD14Q9BXL6 1004 aa25.78■■□□□ 1.72
CLN3-233ENST00000568452 ADGRB2O60241 1585 aa25.78■■□□□ 1.72
CLN3-233ENST00000568452 NLRP13Q86W25 1043 aa25.77■■□□□ 1.72
CLN3-233ENST00000568452 TERF2IPQ9NYB0 399 aa25.76■■□□□ 1.71
CLN3-233ENST00000568452 NSD3Q9BZ95 1437 aa25.76■■□□□ 1.71
CLN3-233ENST00000568452 NCKAP5LQ9HCH0 1330 aa25.75■■□□□ 1.71
CLN3-233ENST00000568452 USP32Q8NFA0 1604 aa25.75■■□□□ 1.71
CLN3-233ENST00000568452 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.71■■□□□ 1.71
CLN3-233ENST00000568452 HDGFL2Q7Z4V5 671 aaPredicted RBP25.71■■□□□ 1.71
CLN3-233ENST00000568452 CGNL1Q0VF96 1302 aa25.7■■□□□ 1.7
CLN3-233ENST00000568452 ATP7BP35670 1465 aa25.7■■□□□ 1.7
CLN3-233ENST00000568452 CHD2O14647 1828 aaKnown RBP25.7■■□□□ 1.7
CLN3-233ENST00000568452 A0A1W2PP64 1363 aa25.7■■□□□ 1.7
CLN3-233ENST00000568452 NSD2O96028 1365 aa25.69■■□□□ 1.7
CLN3-233ENST00000568452 KCNA6P17658 529 aa25.68■■□□□ 1.7
CLN3-233ENST00000568452 CABP1Q9NZU7 370 aa25.68■■□□□ 1.7
CLN3-233ENST00000568452 FAM9BQ8IZU0 186 aa25.67■■□□□ 1.7
CLN3-233ENST00000568452 NUDT16Q96DE0 195 aaKnown RBP25.67■■□□□ 1.7
CLN3-233ENST00000568452 CCDC61Q9Y6R9 512 aa25.66■■□□□ 1.7
CLN3-233ENST00000568452 CD163L1Q9NR16 1453 aa25.66■■□□□ 1.7
CLN3-233ENST00000568452 PPIP5K1Q6PFW1 1433 aa25.64■■□□□ 1.7
CLN3-233ENST00000568452 PPP2R1AP30153 589 aa25.64■■□□□ 1.7
CLN3-233ENST00000568452 PNISRQ8TF01 805 aaKnown RBP25.63■■□□□ 1.69
CLN3-233ENST00000568452 STRCQ7RTU9 1775 aa25.63■■□□□ 1.69
CLN3-233ENST00000568452 MORC1Q86VD1 984 aa25.61■■□□□ 1.69
CLN3-233ENST00000568452 NWD1Q149M9 1564 aa25.59■■□□□ 1.69
CLN3-233ENST00000568452 CDC42BPGQ6DT37 1551 aa25.59■■□□□ 1.69
CLN3-233ENST00000568452 CPSF1Q10570 1443 aaKnown RBP25.59■■□□□ 1.69
CLN3-233ENST00000568452 PRR36Q9H6K5 1346 aa25.59■■□□□ 1.69
CLN3-233ENST00000568452 HNRNPUQ00839 825 aaKnown RBP eCLIP25.58■■□□□ 1.69
CLN3-233ENST00000568452 ZNF692Q9BU19 519 aaPredicted RBP25.57■■□□□ 1.68
CLN3-233ENST00000568452 DMRT2Q9Y5R5 561 aa25.56■■□□□ 1.68
CLN3-233ENST00000568452 TOPAZ1Q8N9V7 1692 aa25.56■■□□□ 1.68
CLN3-233ENST00000568452 EDC4Q6P2E9 1401 aaKnown RBP25.55■■□□□ 1.68
CLN3-233ENST00000568452 ANKARQ7Z5J8 1434 aa25.55■■□□□ 1.68
CLN3-233ENST00000568452 PLEKHG3A1L390 1219 aa25.54■■□□□ 1.68
CLN3-233ENST00000568452 ITSN1Q15811 1721 aa25.53■■□□□ 1.68
CLN3-233ENST00000568452 INSRP06213 1382 aa25.52■■□□□ 1.68
CLN3-233ENST00000568452 NKTRP30414 1462 aaKnown RBP25.51■■□□□ 1.68
CLN3-233ENST00000568452 AKAP12Q02952 1782 aa25.51■■□□□ 1.67
CLN3-233ENST00000568452 ADGRL3Q9HAR2 1447 aa25.51■■□□□ 1.67
CLN3-233ENST00000568452 ANKRD26Q9UPS8 1709 aa25.51■■□□□ 1.67
CLN3-233ENST00000568452 FYB1O15117 783 aa25.51■■□□□ 1.67
CLN3-233ENST00000568452 MON2Q7Z3U7 1717 aa25.51■■□□□ 1.67
CLN3-233ENST00000568452 FMN2Q9NZ56 1722 aa25.5■■□□□ 1.67
CLN3-233ENST00000568452 KIF20BQ96Q89 1820 aa25.49■■□□□ 1.67
CLN3-233ENST00000568452 NALCNQ8IZF0 1738 aa25.49■■□□□ 1.67
CLN3-233ENST00000568452 NUTM2FA1L443 756 aa25.48■■□□□ 1.67
CLN3-233ENST00000568452 GGNBP2Q9H3C7 697 aa25.48■■□□□ 1.67
CLN3-233ENST00000568452 ACEP12821 1306 aa25.47■■□□□ 1.67
CLN3-233ENST00000568452 POLR3AO14802 1390 aaPredicted RBP25.46■■□□□ 1.67
CLN3-233ENST00000568452 PROSER2Q86WR7 435 aaPredicted RBP25.45■■□□□ 1.67
CLN3-233ENST00000568452 WDR43Q15061 677 aaKnown RBP eCLIP25.45■■□□□ 1.66
CLN3-233ENST00000568452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.45■■□□□ 1.66
CLN3-233ENST00000568452 ZBED9Q6R2W3 1325 aa25.44■■□□□ 1.66
CLN3-233ENST00000568452 TNNT2P45379 298 aaPredicted RBP25.44■■□□□ 1.66
CLN3-233ENST00000568452 C14orf37Q86TY3 774 aa25.44■■□□□ 1.66
CLN3-233ENST00000568452 CFAP53Q96M91 514 aa25.42■■□□□ 1.66
CLN3-233ENST00000568452 USP6P35125 1406 aa25.42■■□□□ 1.66
CLN3-233ENST00000568452 NCOA3Q9Y6Q9 1424 aa25.4■■□□□ 1.66
CLN3-233ENST00000568452 SCAF1Q9H7N4 1312 aaKnown RBP25.4■■□□□ 1.66
CLN3-233ENST00000568452 NGDNQ8NEJ9 315 aaKnown RBP25.4■■□□□ 1.66
CLN3-233ENST00000568452 NRKQ7Z2Y5 1582 aa25.39■■□□□ 1.66
CLN3-233ENST00000568452 RGPD8O14715 1765 aaPredicted RBP25.38■■□□□ 1.65
CLN3-233ENST00000568452 TTC21BQ7Z4L5 1316 aa25.38■■□□□ 1.65
CLN3-233ENST00000568452 MTHFSP49914 203 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms