RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 NHSL1Q5SYE7 1610 aa20.4■□□□□ 0.86
COMMD4-221ENST00000567935 DDX10Q13206 875 aaKnown RBP20.39■□□□□ 0.85
COMMD4-221ENST00000567935 HIRIP3Q9BW71 556 aaPredicted RBP20.39■□□□□ 0.85
COMMD4-221ENST00000567935 TBX22Q9Y458 520 aa20.39■□□□□ 0.85
COMMD4-221ENST00000567935 KDM2AQ9Y2K7 1162 aa20.38■□□□□ 0.85
COMMD4-221ENST00000567935 RIMS2Q9UQ26 1411 aa20.37■□□□□ 0.85
COMMD4-221ENST00000567935 RGL3Q3MIN7 710 aa20.37■□□□□ 0.85
COMMD4-221ENST00000567935 LRRC59Q96AG4 307 aaKnown RBP20.37■□□□□ 0.85
COMMD4-221ENST00000567935 ADAMTS13Q76LX8 1427 aa20.36■□□□□ 0.85
COMMD4-221ENST00000567935 ROCK2O75116 1388 aaKnown RBP20.36■□□□□ 0.85
COMMD4-221ENST00000567935 ADAMTS2O95450 1211 aa20.36■□□□□ 0.85
COMMD4-221ENST00000567935 DDX17Q92841 729 aaKnown RBP20.36■□□□□ 0.85
COMMD4-221ENST00000567935 CARD11Q9BXL7 1154 aa20.36■□□□□ 0.85
COMMD4-221ENST00000567935 MYO5BQ9ULV0 1848 aa20.36■□□□□ 0.85
COMMD4-221ENST00000567935 CCDC7Q96M83 1385 aa20.34■□□□□ 0.85
COMMD4-221ENST00000567935 WASHC2AQ641Q2 1341 aa20.34■□□□□ 0.85
COMMD4-221ENST00000567935 SLC52A1Q9NWF4 448 aa20.34■□□□□ 0.85
COMMD4-221ENST00000567935 MYOM2P54296 1465 aa20.34■□□□□ 0.85
COMMD4-221ENST00000567935 MST1RQ04912 1400 aa20.34■□□□□ 0.85
COMMD4-221ENST00000567935 LRP5O75197 1615 aa20.33■□□□□ 0.84
COMMD4-221ENST00000567935 DCCP43146 1447 aa20.33■□□□□ 0.84
COMMD4-221ENST00000567935 CCDC125Q86Z20 511 aa20.32■□□□□ 0.84
COMMD4-221ENST00000567935 USP21Q9UK80 565 aa20.32■□□□□ 0.84
COMMD4-221ENST00000567935 KIAA1210Q9ULL0 1709 aa20.32■□□□□ 0.84
COMMD4-221ENST00000567935 TRPC5Q9UL62 973 aaPredicted RBP20.31■□□□□ 0.84
COMMD4-221ENST00000567935 ATRNO75882 1429 aa20.3■□□□□ 0.84
COMMD4-221ENST00000567935 PTPRUQ92729 1446 aa20.3■□□□□ 0.84
COMMD4-221ENST00000567935 ANP32CO43423 234 aa20.29■□□□□ 0.84
COMMD4-221ENST00000567935 PIK3R4Q99570 1358 aa20.29■□□□□ 0.84
COMMD4-221ENST00000567935 IFT172Q9UG01 1749 aa20.28■□□□□ 0.84
COMMD4-221ENST00000567935 RPGRIP1LQ68CZ1 1315 aa20.27■□□□□ 0.84
COMMD4-221ENST00000567935 TMEM131LA2VDJ0 1609 aa20.27■□□□□ 0.84
COMMD4-221ENST00000567935 CENPBP07199 599 aaPredicted RBP20.27■□□□□ 0.84
COMMD4-221ENST00000567935 AMOTL2Q9Y2J4 779 aa20.27■□□□□ 0.84
COMMD4-221ENST00000567935 HDGFP51858 240 aaKnown RBP20.26■□□□□ 0.83
COMMD4-221ENST00000567935 KIF7Q2M1P5 1343 aa20.26■□□□□ 0.83
COMMD4-221ENST00000567935 FNBP4Q8N3X1 1017 aaPredicted RBP20.25■□□□□ 0.83
COMMD4-221ENST00000567935 CCER2I3L3R5 266 aa20.24■□□□□ 0.83
COMMD4-221ENST00000567935 DEFB132Q7Z7B7 95 aa20.24■□□□□ 0.83
COMMD4-221ENST00000567935 NRXN1Q9ULB1 1477 aa20.24■□□□□ 0.83
COMMD4-221ENST00000567935 BLMP54132 1417 aaPredicted RBP20.22■□□□□ 0.83
COMMD4-221ENST00000567935 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.22■□□□□ 0.83
COMMD4-221ENST00000567935 C11orf95C9JLR9 678 aaPredicted RBP20.21■□□□□ 0.83
COMMD4-221ENST00000567935 PTCH1Q13635 1447 aa20.2■□□□□ 0.82
COMMD4-221ENST00000567935 XRN1Q8IZH2 1706 aaKnown RBP20.2■□□□□ 0.82
COMMD4-221ENST00000567935 PPLO60437 1756 aa20.2■□□□□ 0.82
COMMD4-221ENST00000567935 ST20-MTHFSA0A0A6YYL1 179 aa20.19■□□□□ 0.82
COMMD4-221ENST00000567935 NBPF1Q3BBV0 1214 aa20.19■□□□□ 0.82
COMMD4-221ENST00000567935 SLC24A1O60721 1099 aa20.18■□□□□ 0.82
COMMD4-221ENST00000567935 CHGAP10645 457 aaKnown RBP20.18■□□□□ 0.82
COMMD4-221ENST00000567935 BCL9LQ86UU0 1499 aa20.18■□□□□ 0.82
COMMD4-221ENST00000567935 EIF3AQ14152 1382 aaKnown RBP20.17■□□□□ 0.82
COMMD4-221ENST00000567935 PSDA5PKW4 1024 aaPredicted RBP20.15■□□□□ 0.82
COMMD4-221ENST00000567935 ADGRL3Q9HAR2 1447 aa20.15■□□□□ 0.82
COMMD4-221ENST00000567935 SOS2Q07890 1332 aaPredicted RBP20.14■□□□□ 0.81
COMMD4-221ENST00000567935 C1orf167Q5SNV9 1468 aa20.13■□□□□ 0.81
COMMD4-221ENST00000567935 GJD4Q96KN9 370 aaPredicted RBP20.13■□□□□ 0.81
COMMD4-221ENST00000567935 NALCNQ8IZF0 1738 aa20.13■□□□□ 0.81
COMMD4-221ENST00000567935 PIK3C2GO75747 1445 aa20.12■□□□□ 0.81
COMMD4-221ENST00000567935 VGFO15240 615 aaPredicted RBP20.11■□□□□ 0.81
COMMD4-221ENST00000567935 COL22A1Q8NFW1 1626 aaPredicted RBP20.11■□□□□ 0.81
COMMD4-221ENST00000567935 NRXN3Q9Y4C0 1643 aa20.11■□□□□ 0.81
COMMD4-221ENST00000567935 NEXMIFQ5QGS0 1516 aa20.11■□□□□ 0.81
COMMD4-221ENST00000567935 ADGRF5Q8IZF2 1346 aa20.1■□□□□ 0.81
COMMD4-221ENST00000567935 TMF1P82094 1093 aa20.1■□□□□ 0.81
COMMD4-221ENST00000567935 GLI3P10071 1580 aa20.09■□□□□ 0.81
COMMD4-221ENST00000567935 TESK2Q96S53 571 aa20.09■□□□□ 0.81
COMMD4-221ENST00000567935 SF3B2Q13435 895 aaKnown RBP20.08■□□□□ 0.81
COMMD4-221ENST00000567935 CDCA8Q53HL2 280 aa20.08■□□□□ 0.81
COMMD4-221ENST00000567935 ORAI2Q96SN7 254 aa20.08■□□□□ 0.81
COMMD4-221ENST00000567935 METP08581 1390 aa20.08■□□□□ 0.8
COMMD4-221ENST00000567935 BRWD3Q6RI45 1802 aa20.06■□□□□ 0.8
COMMD4-221ENST00000567935 C14orf93Q9H972 538 aaKnown RBP20.06■□□□□ 0.8
COMMD4-221ENST00000567935 YY1P25490 414 aa20.05■□□□□ 0.8
COMMD4-221ENST00000567935 KTN1Q86UP2 1357 aaKnown RBP20.05■□□□□ 0.8
COMMD4-221ENST00000567935 CFAP70Q5T0N1 1121 aa20.04■□□□□ 0.8
COMMD4-221ENST00000567935 YTHDC1Q96MU7 727 aaKnown RBP20.04■□□□□ 0.8
COMMD4-221ENST00000567935 SBNO2Q9Y2G9 1366 aa20.04■□□□□ 0.8
COMMD4-221ENST00000567935 MARF1Q9Y4F3 1742 aaKnown RBP20.04■□□□□ 0.8
COMMD4-221ENST00000567935 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.03■□□□□ 0.8
COMMD4-221ENST00000567935 PRKRIP1Q9H875 184 aaPredicted RBP20.03■□□□□ 0.8
COMMD4-221ENST00000567935 ADGRB1O14514 1584 aa20.01■□□□□ 0.79
COMMD4-221ENST00000567935 POLR3GLQ9BT43 218 aa20.01■□□□□ 0.79
COMMD4-221ENST00000567935 UNC5CLQ8IV45 518 aa19.99■□□□□ 0.79
COMMD4-221ENST00000567935 SLIT2O94813 1529 aa19.98■□□□□ 0.79
COMMD4-221ENST00000567935 SEPT12Q8IYM1 358 aa19.98■□□□□ 0.79
COMMD4-221ENST00000567935 PXDNQ92626 1479 aa19.95■□□□□ 0.78
COMMD4-221ENST00000567935 BAG6P46379 1132 aa19.95■□□□□ 0.78
COMMD4-221ENST00000567935 R3HDM1Q15032 1099 aaKnown RBP19.95■□□□□ 0.78
COMMD4-221ENST00000567935 CENPJQ9HC77 1338 aaPredicted RBP19.93■□□□□ 0.78
COMMD4-221ENST00000567935 XPCQ01831 940 aaPredicted RBP19.92■□□□□ 0.78
COMMD4-221ENST00000567935 RALBP1Q15311 655 aa19.92■□□□□ 0.78
COMMD4-221ENST00000567935 KRT27Q7Z3Y8 459 aa19.92■□□□□ 0.78
COMMD4-221ENST00000567935 NPHP3Q7Z494 1330 aa19.91■□□□□ 0.78
COMMD4-221ENST00000567935 ROBO2Q9HCK4 1378 aa19.91■□□□□ 0.78
COMMD4-221ENST00000567935 EN1Q05925 392 aaPredicted RBP19.9■□□□□ 0.78
COMMD4-221ENST00000567935 PUS7Q96PZ0 661 aaKnown RBP19.89■□□□□ 0.77
COMMD4-221ENST00000567935 QRICH2Q9H0J4 1663 aa19.88■□□□□ 0.77
COMMD4-221ENST00000567935 ARHGEF28Q8N1W1 1705 aaKnown RBP19.88■□□□□ 0.77
COMMD4-221ENST00000567935 PER1O15534 1290 aaPredicted RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms