RNA–Protein interactions for RNA: ENST00000566290.5

RAB40C-210, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 753 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-210ENST00000566290 ROCK2O75116 1388 aaKnown RBP23.4■■□□□ 1.34
RAB40C-210ENST00000566290 RGS12O14924 1447 aa23.4■■□□□ 1.34
RAB40C-210ENST00000566290 CCER2I3L3R5 266 aa23.39■■□□□ 1.33
RAB40C-210ENST00000566290 CENPBP07199 599 aaPredicted RBP23.38■■□□□ 1.33
RAB40C-210ENST00000566290 QTRT2Q9H974 415 aaKnown RBP23.38■■□□□ 1.33
RAB40C-210ENST00000566290 PTPRUQ92729 1446 aa23.38■■□□□ 1.33
RAB40C-210ENST00000566290 DIP2AQ14689 1571 aa23.38■■□□□ 1.33
RAB40C-210ENST00000566290 SETBP1Q9Y6X0 1596 aa23.38■■□□□ 1.33
RAB40C-210ENST00000566290 NCOA3Q9Y6Q9 1424 aa23.37■■□□□ 1.33
RAB40C-210ENST00000566290 CADPS2Q86UW7 1296 aa23.37■■□□□ 1.33
RAB40C-210ENST00000566290 HIRIP3Q9BW71 556 aaPredicted RBP23.37■■□□□ 1.33
RAB40C-210ENST00000566290 CARD11Q9BXL7 1154 aa23.37■■□□□ 1.33
RAB40C-210ENST00000566290 ATF3P18847 181 aa23.36■■□□□ 1.33
RAB40C-210ENST00000566290 RBM6P78332 1123 aaKnown RBP23.36■■□□□ 1.33
RAB40C-210ENST00000566290 BRINP3Q76B58 766 aa23.36■■□□□ 1.33
RAB40C-210ENST00000566290 C19orf44Q9H6X5 657 aa23.36■■□□□ 1.33
RAB40C-210ENST00000566290 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.36■■□□□ 1.33
RAB40C-210ENST00000566290 PPLO60437 1756 aa23.35■■□□□ 1.33
RAB40C-210ENST00000566290 KIF7Q2M1P5 1343 aa23.34■■□□□ 1.33
RAB40C-210ENST00000566290 RGL3Q3MIN7 710 aa23.34■■□□□ 1.33
RAB40C-210ENST00000566290 METP08581 1390 aa23.33■■□□□ 1.33
RAB40C-210ENST00000566290 RPGRIP1LQ68CZ1 1315 aa23.33■■□□□ 1.32
RAB40C-210ENST00000566290 C8orf37Q96NL8 207 aa23.32■■□□□ 1.32
RAB40C-210ENST00000566290 ANP32CO43423 234 aa23.31■■□□□ 1.32
RAB40C-210ENST00000566290 PIK3R4Q99570 1358 aa23.3■■□□□ 1.32
RAB40C-210ENST00000566290 ZRANB1Q9UGI0 708 aa23.3■■□□□ 1.32
RAB40C-210ENST00000566290 AMOTL2Q9Y2J4 779 aa23.3■■□□□ 1.32
RAB40C-210ENST00000566290 KDM2AQ9Y2K7 1162 aa23.3■■□□□ 1.32
RAB40C-210ENST00000566290 VGFO15240 615 aaPredicted RBP23.29■■□□□ 1.32
RAB40C-210ENST00000566290 ADGRF5Q8IZF2 1346 aa23.29■■□□□ 1.32
RAB40C-210ENST00000566290 C11orf95C9JLR9 678 aaPredicted RBP23.28■■□□□ 1.32
RAB40C-210ENST00000566290 XRN1Q8IZH2 1706 aaKnown RBP23.26■■□□□ 1.31
RAB40C-210ENST00000566290 ATAD2Q6PL18 1390 aa23.24■■□□□ 1.31
RAB40C-210ENST00000566290 DDX17Q92841 729 aaKnown RBP23.23■■□□□ 1.31
RAB40C-210ENST00000566290 LRRC59Q96AG4 307 aaKnown RBP23.23■■□□□ 1.31
RAB40C-210ENST00000566290 PIK3C2GO75747 1445 aa23.23■■□□□ 1.31
RAB40C-210ENST00000566290 ASXL1Q8IXJ9 1541 aa23.22■■□□□ 1.31
RAB40C-210ENST00000566290 NGLY1Q96IV0 654 aa23.21■■□□□ 1.31
RAB40C-210ENST00000566290 EIF3AQ14152 1382 aaKnown RBP23.21■■□□□ 1.31
RAB40C-210ENST00000566290 ST20-MTHFSA0A0A6YYL1 179 aa23.2■■□□□ 1.3
RAB40C-210ENST00000566290 SLC24A1O60721 1099 aa23.2■■□□□ 1.3
RAB40C-210ENST00000566290 PNPLA6Q8IY17 1366 aa23.19■■□□□ 1.3
RAB40C-210ENST00000566290 ADAMTS2O95450 1211 aa23.19■■□□□ 1.3
RAB40C-210ENST00000566290 KTN1Q86UP2 1357 aaKnown RBP23.18■■□□□ 1.3
RAB40C-210ENST00000566290 SBNO2Q9Y2G9 1366 aa23.18■■□□□ 1.3
RAB40C-210ENST00000566290 NBPF1Q3BBV0 1214 aa23.18■■□□□ 1.3
RAB40C-210ENST00000566290 NHSL1Q5SYE7 1610 aa23.16■■□□□ 1.3
RAB40C-210ENST00000566290 TESK2Q96S53 571 aa23.16■■□□□ 1.3
RAB40C-210ENST00000566290 MST1RQ04912 1400 aa23.16■■□□□ 1.3
RAB40C-210ENST00000566290 ROBO2Q9HCK4 1378 aa23.14■■□□□ 1.3
RAB40C-210ENST00000566290 ADGRB1O14514 1584 aa23.14■■□□□ 1.3
RAB40C-210ENST00000566290 TMEM132EQ6IEE7 984 aa23.13■■□□□ 1.29
RAB40C-210ENST00000566290 USP21Q9UK80 565 aa23.13■■□□□ 1.29
RAB40C-210ENST00000566290 DCCP43146 1447 aa23.12■■□□□ 1.29
RAB40C-210ENST00000566290 TRPC5Q9UL62 973 aaPredicted RBP23.11■■□□□ 1.29
RAB40C-210ENST00000566290 PRKRIP1Q9H875 184 aaPredicted RBP23.1■■□□□ 1.29
RAB40C-210ENST00000566290 PTCH1Q13635 1447 aa23.09■■□□□ 1.29
RAB40C-210ENST00000566290 CFAP70Q5T0N1 1121 aa23.09■■□□□ 1.29
RAB40C-210ENST00000566290 EP400Q96L91 3159 aa23.09■■□□□ 1.29
RAB40C-210ENST00000566290 NALCNQ8IZF0 1738 aa23.08■■□□□ 1.29
RAB40C-210ENST00000566290 C14orf93Q9H972 538 aaKnown RBP23.08■■□□□ 1.29
RAB40C-210ENST00000566290 TMF1P82094 1093 aa23.07■■□□□ 1.28
RAB40C-210ENST00000566290 CCDC125Q86Z20 511 aa23.07■■□□□ 1.28
RAB40C-210ENST00000566290 STK26Q9P289 416 aa23.07■■□□□ 1.28
RAB40C-210ENST00000566290 ADGRL3Q9HAR2 1447 aa23.07■■□□□ 1.28
RAB40C-210ENST00000566290 CDCA8Q53HL2 280 aa23.06■■□□□ 1.28
RAB40C-210ENST00000566290 FNBP4Q8N3X1 1017 aaPredicted RBP23.06■■□□□ 1.28
RAB40C-210ENST00000566290 LRPPRCP42704 1394 aaKnown RBP23.04■■□□□ 1.28
RAB40C-210ENST00000566290 ATRNO75882 1429 aa23.04■■□□□ 1.28
RAB40C-210ENST00000566290 WAPLQ7Z5K2 1190 aa23.03■■□□□ 1.28
RAB40C-210ENST00000566290 PLEKHH1Q9ULM0 1364 aa23.02■■□□□ 1.28
RAB40C-210ENST00000566290 TECPR2O15040 1411 aa23.02■■□□□ 1.28
RAB40C-210ENST00000566290 YTHDC2Q9H6S0 1430 aaKnown RBP23.02■■□□□ 1.28
RAB40C-210ENST00000566290 MYOM1P52179 1685 aa23.01■■□□□ 1.27
RAB40C-210ENST00000566290 ABCC11Q96J66 1382 aa23.01■■□□□ 1.27
RAB40C-210ENST00000566290 YTHDC1Q96MU7 727 aaKnown RBP23■■□□□ 1.27
RAB40C-210ENST00000566290 KNDC1Q76NI1 1749 aa22.99■■□□□ 1.27
RAB40C-210ENST00000566290 ARHGEF28Q8N1W1 1705 aaKnown RBP22.99■■□□□ 1.27
RAB40C-210ENST00000566290 SOS2Q07890 1332 aaPredicted RBP22.97■■□□□ 1.27
RAB40C-210ENST00000566290 QRICH2Q9H0J4 1663 aa22.97■■□□□ 1.27
RAB40C-210ENST00000566290 DEFB132Q7Z7B7 95 aa22.96■■□□□ 1.27
RAB40C-210ENST00000566290 C1orf167Q5SNV9 1468 aa22.95■■□□□ 1.26
RAB40C-210ENST00000566290 ORAI2Q96SN7 254 aa22.95■■□□□ 1.26
RAB40C-210ENST00000566290 RALBP1Q15311 655 aa22.94■■□□□ 1.26
RAB40C-210ENST00000566290 PUS7Q96PZ0 661 aaKnown RBP22.94■■□□□ 1.26
RAB40C-210ENST00000566290 BCL9LQ86UU0 1499 aa22.93■■□□□ 1.26
RAB40C-210ENST00000566290 PARD3Q8TEW0 1356 aa22.93■■□□□ 1.26
RAB40C-210ENST00000566290 NPC1L1Q9UHC9 1359 aa22.93■■□□□ 1.26
RAB40C-210ENST00000566290 GJD4Q96KN9 370 aaPredicted RBP22.92■■□□□ 1.26
RAB40C-210ENST00000566290 PER1O15534 1290 aaPredicted RBP22.91■■□□□ 1.26
RAB40C-210ENST00000566290 DLC1Q96QB1 1528 aa22.91■■□□□ 1.26
RAB40C-210ENST00000566290 SIRT1Q96EB6 747 aa22.9■■□□□ 1.26
RAB40C-210ENST00000566290 BLMP54132 1417 aaPredicted RBP22.9■■□□□ 1.26
RAB40C-210ENST00000566290 BRD4O60885 1362 aaPredicted RBP22.89■■□□□ 1.26
RAB40C-210ENST00000566290 CDC42BPGQ6DT37 1551 aa22.89■■□□□ 1.26
RAB40C-210ENST00000566290 CENPJQ9HC77 1338 aaPredicted RBP22.89■■□□□ 1.26
RAB40C-210ENST00000566290 PRAM1Q96QH2 718 aa22.89■■□□□ 1.25
RAB40C-210ENST00000566290 TRAK1Q9UPV9 953 aa22.89■■□□□ 1.25
RAB40C-210ENST00000566290 SAFB2Q14151 953 aaKnown RBP eCLIP22.88■■□□□ 1.25
RAB40C-210ENST00000566290 LRP5O75197 1615 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms