RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 RSPH4AQ5TD94 716 aa7.5□□□□□ -1.21
CLK3-212ENST00000563418 UBXN4Q92575 508 aa7.5□□□□□ -1.21
CLK3-212ENST00000563418 SOGA1O94964 1423 aa7.5□□□□□ -1.21
CLK3-212ENST00000563418 PDE3AQ14432 1141 aa7.5□□□□□ -1.21
CLK3-212ENST00000563418 INTS3Q68E01 1043 aaKnown RBP7.5□□□□□ -1.21
CLK3-212ENST00000563418 GTF2F1P35269 517 aaKnown RBP eCLIP7.5□□□□□ -1.21
CLK3-212ENST00000563418 RNF214Q8ND24 703 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 VGFO15240 615 aaPredicted RBP7.49□□□□□ -1.21
CLK3-212ENST00000563418 ZKSCAN2Q63HK3 967 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 MYRIPQ8NFW9 859 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 WDR97A6NE52 1622 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 IQCEQ6IPM2 695 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 PLEKHH1Q9ULM0 1364 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 UACAQ9BZF9 1416 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 TMCO5BA8MYB1 307 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 IPO7O95373 1038 aaKnown RBP7.49□□□□□ -1.21
CLK3-212ENST00000563418 PSMD1Q99460 953 aa7.49□□□□□ -1.21
CLK3-212ENST00000563418 MPHOSPH10O00566 681 aaKnown RBP7.48□□□□□ -1.21
CLK3-212ENST00000563418 FBXO3Q9UK99 471 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 ZNF397Q8NF99 534 aaPredicted RBP7.48□□□□□ -1.21
CLK3-212ENST00000563418 PPM1EQ8WY54 764 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 ROCK1Q13464 1354 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 PLIN1O60240 522 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 CDC45O75419 566 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 KIF1CO43896 1103 aaKnown RBP7.48□□□□□ -1.21
CLK3-212ENST00000563418 TUBB4BP68371 445 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 JAKMIP3Q5VZ66 844 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 A0A1B0GUA9 196 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 VGLL3A8MV65 326 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 GOLIM4O00461 696 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 PRPF40AO75400 957 aaKnown RBP7.48□□□□□ -1.21
CLK3-212ENST00000563418 CAVIN2O95810 425 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 TMX4Q9H1E5 349 aaPredicted RBP7.48□□□□□ -1.21
CLK3-212ENST00000563418 SENP3-EIF4A1A0A087X0R7 540 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 P3H3Q8IVL6 736 aa7.48□□□□□ -1.21
CLK3-212ENST00000563418 HOOK1Q9UJC3 728 aaKnown RBP7.48□□□□□ -1.21
CLK3-212ENST00000563418 SMC4Q9NTJ3 1288 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 USP47Q96K76 1375 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 CCDC171Q6TFL3 1326 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 MAP9Q49MG5 647 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 FMNL3Q8IVF7 1028 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 PTPN14Q15678 1187 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 LRCH2Q5VUJ6 765 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 SUDS3Q9H7L9 328 aaPredicted RBP7.47□□□□□ -1.21
CLK3-212ENST00000563418 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.47□□□□□ -1.21
CLK3-212ENST00000563418 GOLGA6L10A0A0M3HER8 536 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 SPDYE4A6NLX3 237 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 CCDC88BA6NC98 1476 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 TSPY4P0CV99 314 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 TSPY10P0CW01 314 aa7.47□□□□□ -1.21
CLK3-212ENST00000563418 MIA2Q96PC5 1412 aa7.46□□□□□ -1.21
CLK3-212ENST00000563418 OS9Q13438 667 aaPredicted RBP7.46□□□□□ -1.21
CLK3-212ENST00000563418 AEBP2Q6ZN18 517 aaPredicted RBP7.46□□□□□ -1.21
CLK3-212ENST00000563418 WDR33Q9C0J8 1336 aaKnown RBP7.46□□□□□ -1.22
CLK3-212ENST00000563418 ZNF500O60304 480 aaPredicted RBP7.46□□□□□ -1.22
CLK3-212ENST00000563418 CT47B1P0C2W7 299 aaPredicted RBP7.46□□□□□ -1.22
CLK3-212ENST00000563418 NUTM1Q86Y26 1132 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 GPATCH3Q96I76 525 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 GBP6Q6ZN66 633 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 CUX1P39880 1505 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 CEP120Q8N960 986 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 NOLC1Q14978 699 aaKnown RBP eCLIP7.46□□□□□ -1.22
CLK3-212ENST00000563418 SMC2O95347 1197 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 NEUROD2Q15784 382 aa7.46□□□□□ -1.22
CLK3-212ENST00000563418 SRRTQ9BXP5 876 aaKnown RBP7.46□□□□□ -1.22
CLK3-212ENST00000563418 ATAD2Q6PL18 1390 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 EZRP15311 586 aaKnown RBP7.45□□□□□ -1.22
CLK3-212ENST00000563418 ATP6V1AP38606 617 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 LRRCC1Q9C099 1032 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 MAP2K2P36507 400 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 SMTNL1A8MU46 457 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 ERICH3Q5RHP9 1530 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 ABCC8Q09428 1581 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 PDCP20941 246 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 NEXNQ0ZGT2 675 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 KLHL34Q8N239 644 aa7.45□□□□□ -1.22
CLK3-212ENST00000563418 SWAP70Q9UH65 585 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 CCDC144AA2RUR9 1427 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 CCDC183Q5T5S1 534 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 GOLGA6L9A6NEM1 432 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 CCDC73Q6ZRK6 1079 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 TACO1Q9BSH4 297 aaKnown RBP7.44□□□□□ -1.22
CLK3-212ENST00000563418 ERC1Q8IUD2 1116 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 TNPO1Q92973 898 aaKnown RBP7.44□□□□□ -1.22
CLK3-212ENST00000563418 PANK2Q9BZ23 570 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 ZNF777Q9ULD5 760 aaPredicted RBP7.44□□□□□ -1.22
CLK3-212ENST00000563418 SYCE3A1L190 88 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 SRPK2P78362 688 aaKnown RBP7.44□□□□□ -1.22
CLK3-212ENST00000563418 MIPOL1Q8TD10 442 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 ZSCAN12O43309 604 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 TNNT1P13805 278 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 LRSAM1Q6UWE0 723 aa7.44□□□□□ -1.22
CLK3-212ENST00000563418 H3BQV1 296 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 GSDMDP57764 484 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 IFFO2Q5TF58 517 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 TBC1D2Q9BYX2 928 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 MKRN1Q9UHC7 482 aaKnown RBP7.43□□□□□ -1.22
CLK3-212ENST00000563418 CCDC102AQ96A19 550 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 POTEDQ86YR6 584 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 BICD2Q8TD16 824 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms