RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 CC2D1BQ5T0F9 858 aaKnown RBP24.62■■□□□ 1.53
COMMD4-208ENST00000563220 SLC12A5Q9H2X9 1139 aa24.62■■□□□ 1.53
COMMD4-208ENST00000563220 PARD3Q8TEW0 1356 aa24.6■■□□□ 1.53
COMMD4-208ENST00000563220 AMER1Q5JTC6 1135 aaPredicted RBP24.6■■□□□ 1.53
COMMD4-208ENST00000563220 TMC1Q8TDI8 760 aa24.6■■□□□ 1.53
COMMD4-208ENST00000563220 SIRT1Q96EB6 747 aa24.6■■□□□ 1.53
COMMD4-208ENST00000563220 CARD14Q9BXL6 1004 aa24.6■■□□□ 1.53
COMMD4-208ENST00000563220 TBX22Q9Y458 520 aa24.59■■□□□ 1.53
COMMD4-208ENST00000563220 TECPR2O15040 1411 aa24.59■■□□□ 1.53
COMMD4-208ENST00000563220 MYBBP1AQ9BQG0 1328 aaKnown RBP24.58■■□□□ 1.52
COMMD4-208ENST00000563220 SRPK2P78362 688 aaKnown RBP24.57■■□□□ 1.52
COMMD4-208ENST00000563220 SETD1BQ9UPS6 1966 aaKnown RBP24.56■■□□□ 1.52
COMMD4-208ENST00000563220 CDK19Q9BWU1 502 aa24.55■■□□□ 1.52
COMMD4-208ENST00000563220 FAM135BQ49AJ0 1406 aa24.55■■□□□ 1.52
COMMD4-208ENST00000563220 PTPRUQ92729 1446 aa24.54■■□□□ 1.52
COMMD4-208ENST00000563220 ZNF142P52746 1687 aaPredicted RBP24.53■■□□□ 1.52
COMMD4-208ENST00000563220 ANKLE2Q86XL3 938 aa24.53■■□□□ 1.52
COMMD4-208ENST00000563220 ROBO2Q9HCK4 1378 aa24.53■■□□□ 1.52
COMMD4-208ENST00000563220 FAM9BQ8IZU0 186 aa24.51■■□□□ 1.51
COMMD4-208ENST00000563220 NPC1L1Q9UHC9 1359 aa24.51■■□□□ 1.51
COMMD4-208ENST00000563220 CPS1P31327 1500 aa24.51■■□□□ 1.51
COMMD4-208ENST00000563220 KNDC1Q76NI1 1749 aa24.51■■□□□ 1.51
COMMD4-208ENST00000563220 AMOTL2Q9Y2J4 779 aa24.5■■□□□ 1.51
COMMD4-208ENST00000563220 ATAD2Q6PL18 1390 aa24.5■■□□□ 1.51
COMMD4-208ENST00000563220 BRD4O60885 1362 aaPredicted RBP24.49■■□□□ 1.51
COMMD4-208ENST00000563220 NLRP13Q86W25 1043 aa24.49■■□□□ 1.51
COMMD4-208ENST00000563220 WASLO00401 505 aaPredicted RBP24.47■■□□□ 1.51
COMMD4-208ENST00000563220 ANKRD36BQ8N2N9 1353 aa24.47■■□□□ 1.51
COMMD4-208ENST00000563220 NSD3Q9BZ95 1437 aa24.46■■□□□ 1.51
COMMD4-208ENST00000563220 PNISRQ8TF01 805 aaKnown RBP24.46■■□□□ 1.51
COMMD4-208ENST00000563220 NINLQ9Y2I6 1382 aa24.46■■□□□ 1.51
COMMD4-208ENST00000563220 DIP2AQ14689 1571 aa24.46■■□□□ 1.51
COMMD4-208ENST00000563220 CABP1Q9NZU7 370 aa24.43■■□□□ 1.5
COMMD4-208ENST00000563220 PPP2R1AP30153 589 aa24.42■■□□□ 1.5
COMMD4-208ENST00000563220 A0A1W2PP64 1363 aa24.41■■□□□ 1.5
COMMD4-208ENST00000563220 HNRNPUQ00839 825 aaKnown RBP eCLIP24.41■■□□□ 1.5
COMMD4-208ENST00000563220 PIK3R4Q99570 1358 aa24.4■■□□□ 1.5
COMMD4-208ENST00000563220 KDM4FA0A1W2PPD8 638 aa24.4■■□□□ 1.5
COMMD4-208ENST00000563220 CD163L1Q9NR16 1453 aa24.39■■□□□ 1.5
COMMD4-208ENST00000563220 PTCH1Q13635 1447 aa24.39■■□□□ 1.49
COMMD4-208ENST00000563220 KCNA6P17658 529 aa24.38■■□□□ 1.49
COMMD4-208ENST00000563220 TERF2IPQ9NYB0 399 aa24.38■■□□□ 1.49
COMMD4-208ENST00000563220 NCKAP5LQ9HCH0 1330 aa24.37■■□□□ 1.49
COMMD4-208ENST00000563220 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.37■■□□□ 1.49
COMMD4-208ENST00000563220 NUDT16Q96DE0 195 aaKnown RBP24.37■■□□□ 1.49
COMMD4-208ENST00000563220 CGNL1Q0VF96 1302 aa24.36■■□□□ 1.49
COMMD4-208ENST00000563220 NPHP4O75161 1426 aaPredicted RBP24.36■■□□□ 1.49
COMMD4-208ENST00000563220 HDGFL2Q7Z4V5 671 aaPredicted RBP24.34■■□□□ 1.49
COMMD4-208ENST00000563220 XRN1Q8IZH2 1706 aaKnown RBP24.34■■□□□ 1.49
COMMD4-208ENST00000563220 PRR36Q9H6K5 1346 aa24.33■■□□□ 1.49
COMMD4-208ENST00000563220 GTF3C3Q9Y5Q9 886 aa24.33■■□□□ 1.49
COMMD4-208ENST00000563220 CCDC61Q9Y6R9 512 aa24.33■■□□□ 1.49
COMMD4-208ENST00000563220 MORC1Q86VD1 984 aa24.32■■□□□ 1.48
COMMD4-208ENST00000563220 USP32Q8NFA0 1604 aa24.32■■□□□ 1.48
COMMD4-208ENST00000563220 ADGRB2O60241 1585 aa24.31■■□□□ 1.48
COMMD4-208ENST00000563220 PPIP5K1Q6PFW1 1433 aa24.31■■□□□ 1.48
COMMD4-208ENST00000563220 ATP7BP35670 1465 aa24.29■■□□□ 1.48
COMMD4-208ENST00000563220 NUTM2FA1L443 756 aa24.28■■□□□ 1.48
COMMD4-208ENST00000563220 FYB1O15117 783 aa24.28■■□□□ 1.48
COMMD4-208ENST00000563220 NSD2O96028 1365 aa24.28■■□□□ 1.48
COMMD4-208ENST00000563220 CPSF1Q10570 1443 aaKnown RBP24.27■■□□□ 1.48
COMMD4-208ENST00000563220 TNNT2P45379 298 aaPredicted RBP24.26■■□□□ 1.47
COMMD4-208ENST00000563220 GGNBP2Q9H3C7 697 aa24.26■■□□□ 1.47
COMMD4-208ENST00000563220 CHD2O14647 1828 aaKnown RBP24.25■■□□□ 1.47
COMMD4-208ENST00000563220 HSPA2P54652 639 aa24.24■■□□□ 1.47
COMMD4-208ENST00000563220 PELP1Q8IZL8 1130 aaKnown RBP24.23■■□□□ 1.47
COMMD4-208ENST00000563220 ZBED9Q6R2W3 1325 aa24.22■■□□□ 1.47
COMMD4-208ENST00000563220 PLEKHG3A1L390 1219 aa24.21■■□□□ 1.47
COMMD4-208ENST00000563220 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.21■■□□□ 1.47
COMMD4-208ENST00000563220 RBM33Q96EV2 1170 aaKnown RBP24.21■■□□□ 1.47
COMMD4-208ENST00000563220 CDC42BPGQ6DT37 1551 aa24.2■■□□□ 1.46
COMMD4-208ENST00000563220 SENP3-EIF4A1A0A087X0R7 540 aa24.19■■□□□ 1.46
COMMD4-208ENST00000563220 ADAMTS8Q9UP79 889 aa24.19■■□□□ 1.46
COMMD4-208ENST00000563220 ZNF692Q9BU19 519 aaPredicted RBP24.19■■□□□ 1.46
COMMD4-208ENST00000563220 EDC4Q6P2E9 1401 aaKnown RBP24.18■■□□□ 1.46
COMMD4-208ENST00000563220 ACEP12821 1306 aa24.17■■□□□ 1.46
COMMD4-208ENST00000563220 POLR3AO14802 1390 aaPredicted RBP24.17■■□□□ 1.46
COMMD4-208ENST00000563220 MTHFSP49914 203 aa24.17■■□□□ 1.46
COMMD4-208ENST00000563220 INSRP06213 1382 aa24.16■■□□□ 1.46
COMMD4-208ENST00000563220 WDR43Q15061 677 aaKnown RBP eCLIP24.15■■□□□ 1.46
COMMD4-208ENST00000563220 NKTRP30414 1462 aaKnown RBP24.15■■□□□ 1.46
COMMD4-208ENST00000563220 TOPAZ1Q8N9V7 1692 aa24.15■■□□□ 1.46
COMMD4-208ENST00000563220 NME9Q86XW9 330 aa24.13■■□□□ 1.45
COMMD4-208ENST00000563220 PMFBP1Q8TBY8 1022 aa24.13■■□□□ 1.45
COMMD4-208ENST00000563220 LMTK3Q96Q04 1460 aa24.13■■□□□ 1.45
COMMD4-208ENST00000563220 BLMP54132 1417 aaPredicted RBP24.12■■□□□ 1.45
COMMD4-208ENST00000563220 ZRANB1Q9UGI0 708 aa24.12■■□□□ 1.45
COMMD4-208ENST00000563220 ANKARQ7Z5J8 1434 aa24.11■■□□□ 1.45
COMMD4-208ENST00000563220 NWD1Q149M9 1564 aa24.11■■□□□ 1.45
COMMD4-208ENST00000563220 AKAP12Q02952 1782 aa24.1■■□□□ 1.45
COMMD4-208ENST00000563220 ADGRL3Q9HAR2 1447 aa24.09■■□□□ 1.45
COMMD4-208ENST00000563220 PROSER2Q86WR7 435 aaPredicted RBP24.09■■□□□ 1.45
COMMD4-208ENST00000563220 MON2Q7Z3U7 1717 aa24.09■■□□□ 1.45
COMMD4-208ENST00000563220 TTC21BQ7Z4L5 1316 aa24.09■■□□□ 1.45
COMMD4-208ENST00000563220 NALCNQ8IZF0 1738 aa24.09■■□□□ 1.45
COMMD4-208ENST00000563220 USP6P35125 1406 aa24.08■■□□□ 1.45
COMMD4-208ENST00000563220 ANKRD26Q9UPS8 1709 aa24.08■■□□□ 1.44
COMMD4-208ENST00000563220 FBLN1P23142 703 aa24.07■■□□□ 1.44
COMMD4-208ENST00000563220 KIF20BQ96Q89 1820 aa24.07■■□□□ 1.44
COMMD4-208ENST00000563220 NGDNQ8NEJ9 315 aaKnown RBP24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms