RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 MYOM1P52179 1685 aa20.76■□□□□ 0.91
TPM1-228ENST00000560975 RUNDC1Q96C34 613 aa20.76■□□□□ 0.91
TPM1-228ENST00000560975 IQGAP1P46940 1657 aa20.76■□□□□ 0.91
TPM1-228ENST00000560975 HSP90AB1P08238 724 aaKnown RBP20.74■□□□□ 0.91
TPM1-228ENST00000560975 DZIP1LQ8IYY4 767 aaKnown RBP20.74■□□□□ 0.91
TPM1-228ENST00000560975 IQGAP3Q86VI3 1631 aa20.73■□□□□ 0.91
TPM1-228ENST00000560975 MADDQ8WXG6 1647 aa20.73■□□□□ 0.91
TPM1-228ENST00000560975 MORC1Q86VD1 984 aa20.73■□□□□ 0.91
TPM1-228ENST00000560975 CDC42BPBQ9Y5S2 1711 aa20.73■□□□□ 0.91
TPM1-228ENST00000560975 ZKSCAN2Q63HK3 967 aa20.73■□□□□ 0.91
TPM1-228ENST00000560975 ISY1Q9ULR0 285 aaKnown RBP20.72■□□□□ 0.91
TPM1-228ENST00000560975 KIAA1211Q6ZU35 1233 aa20.72■□□□□ 0.91
TPM1-228ENST00000560975 ITPRIPQ8IWB1 547 aa20.71■□□□□ 0.91
TPM1-228ENST00000560975 GBP4Q96PP9 640 aa20.71■□□□□ 0.91
TPM1-228ENST00000560975 POLR3AO14802 1390 aaPredicted RBP20.71■□□□□ 0.91
TPM1-228ENST00000560975 TPM2P07951 284 aa20.71■□□□□ 0.91
TPM1-228ENST00000560975 ATP10AO60312 1499 aa20.7■□□□□ 0.91
TPM1-228ENST00000560975 CFAP70Q5T0N1 1121 aa20.7■□□□□ 0.9
TPM1-228ENST00000560975 WDR63Q8IWG1 891 aa20.7■□□□□ 0.9
TPM1-228ENST00000560975 DDIT3P35638 169 aa20.7■□□□□ 0.9
TPM1-228ENST00000560975 TSR2Q969E8 191 aaKnown RBP20.7■□□□□ 0.9
TPM1-228ENST00000560975 ARHGAP5Q13017 1502 aa20.69■□□□□ 0.9
TPM1-228ENST00000560975 SMC4Q9NTJ3 1288 aa20.68■□□□□ 0.9
TPM1-228ENST00000560975 KDM5AP29375 1690 aaKnown RBP20.68■□□□□ 0.9
TPM1-228ENST00000560975 RBM10P98175 930 aaKnown RBP20.67■□□□□ 0.9
TPM1-228ENST00000560975 SCAPERQ9BY12 1400 aa20.67■□□□□ 0.9
TPM1-228ENST00000560975 PREX2Q70Z35 1606 aa20.66■□□□□ 0.9
TPM1-228ENST00000560975 LNPKQ9C0E8 428 aa20.66■□□□□ 0.9
TPM1-228ENST00000560975 RAB3GAP1Q15042 981 aa20.66■□□□□ 0.9
TPM1-228ENST00000560975 SMC5Q8IY18 1101 aa20.66■□□□□ 0.9
TPM1-228ENST00000560975 MAST1Q9Y2H9 1570 aa20.65■□□□□ 0.9
TPM1-228ENST00000560975 NCOA3Q9Y6Q9 1424 aa20.65■□□□□ 0.9
TPM1-228ENST00000560975 PHF23Q9BUL5 403 aaPredicted RBP20.65■□□□□ 0.9
TPM1-228ENST00000560975 PDCL3Q9H2J4 239 aa20.65■□□□□ 0.9
TPM1-228ENST00000560975 ERVK-7P63135 1459 aa20.65■□□□□ 0.9
TPM1-228ENST00000560975 TRIM27P14373 513 aa20.65■□□□□ 0.9
TPM1-228ENST00000560975 NASPP49321 788 aaPredicted RBP20.65■□□□□ 0.9
TPM1-228ENST00000560975 CD2BP2O95400 341 aaKnown RBP20.64■□□□□ 0.9
TPM1-228ENST00000560975 MTHFSP49914 203 aa20.64■□□□□ 0.9
TPM1-228ENST00000560975 SKOR2Q2VWA4 1001 aaPredicted RBP20.64■□□□□ 0.9
TPM1-228ENST00000560975 HDAC1Q13547 482 aaPredicted RBP20.64■□□□□ 0.89
TPM1-228ENST00000560975 SNX21Q969T3 373 aa20.64■□□□□ 0.89
TPM1-228ENST00000560975 CEP152O94986 1710 aa20.63■□□□□ 0.89
TPM1-228ENST00000560975 RBM25P49756 843 aaKnown RBP20.63■□□□□ 0.89
TPM1-228ENST00000560975 SSFA2P28290 1259 aa20.63■□□□□ 0.89
TPM1-228ENST00000560975 EXOSC9Q06265 439 aaKnown RBP20.63■□□□□ 0.89
TPM1-228ENST00000560975 CCDC173Q0VFZ6 552 aa20.63■□□□□ 0.89
TPM1-228ENST00000560975 NSD3Q9BZ95 1437 aa20.63■□□□□ 0.89
TPM1-228ENST00000560975 U2AF1L5P0DN76 240 aaPredicted RBP20.62■□□□□ 0.89
TPM1-228ENST00000560975 U2AF1Q01081 240 aaKnown RBP eCLIP20.62■□□□□ 0.896e-9■■■■□ 21.7
TPM1-228ENST00000560975 RBM42Q9BTD8 480 aaKnown RBP20.62■□□□□ 0.89
TPM1-228ENST00000560975 SLC12A5Q9H2X9 1139 aa20.62■□□□□ 0.89
TPM1-228ENST00000560975 CIZ1Q9ULV3 898 aaPredicted RBP20.62■□□□□ 0.89
TPM1-228ENST00000560975 ANP32BQ92688 251 aaKnown RBP20.61■□□□□ 0.89
TPM1-228ENST00000560975 ZSCAN30Q86W11 494 aa20.61■□□□□ 0.89
TPM1-228ENST00000560975 SSH1Q8WYL5 1049 aa20.61■□□□□ 0.89
TPM1-228ENST00000560975 DDX19BQ9UMR2 479 aa20.61■□□□□ 0.89
TPM1-228ENST00000560975 IQSEC2Q5JU85 1478 aa20.6■□□□□ 0.89
TPM1-228ENST00000560975 DUOX2Q9NRD8 1548 aa20.6■□□□□ 0.89
TPM1-228ENST00000560975 MSNP26038 577 aaKnown RBP20.6■□□□□ 0.89
TPM1-228ENST00000560975 DDX49Q9Y6V7 483 aaKnown RBP20.6■□□□□ 0.89
TPM1-228ENST00000560975 TMEM57Q8N5G2 664 aa20.6■□□□□ 0.89
TPM1-228ENST00000560975 NOB1Q9ULX3 412 aaKnown RBP20.6■□□□□ 0.89
TPM1-228ENST00000560975 TTC37Q6PGP7 1564 aa20.59■□□□□ 0.89
TPM1-228ENST00000560975 SHPRHQ149N8 1683 aa20.59■□□□□ 0.89
TPM1-228ENST00000560975 ADGRF5Q8IZF2 1346 aa20.58■□□□□ 0.89
TPM1-228ENST00000560975 NCLP19338 710 aaKnown RBP20.58■□□□□ 0.88
TPM1-228ENST00000560975 ATF7IPQ6VMQ6 1270 aa20.58■□□□□ 0.88
TPM1-228ENST00000560975 CFAP53Q96M91 514 aa20.58■□□□□ 0.88
TPM1-228ENST00000560975 PPP1R9BQ96SB3 815 aa20.58■□□□□ 0.88
TPM1-228ENST00000560975 SPHKAPQ2M3C7 1700 aa20.58■□□□□ 0.88
TPM1-228ENST00000560975 CCDC27Q2M243 656 aa20.57■□□□□ 0.88
TPM1-228ENST00000560975 KIF2CQ99661 725 aa20.57■□□□□ 0.88
TPM1-228ENST00000560975 OFD1O75665 1012 aa20.57■□□□□ 0.88
TPM1-228ENST00000560975 FAM13BQ9NYF5 915 aa20.57■□□□□ 0.88
TPM1-228ENST00000560975 R3HCC1Q9Y3T6 440 aaKnown RBP20.57■□□□□ 0.88
TPM1-228ENST00000560975 GOLGA6L22H0YM25 854 aa20.56■□□□□ 0.88
TPM1-228ENST00000560975 RIPK4P57078 832 aa20.56■□□□□ 0.88
TPM1-228ENST00000560975 GAS2L2Q8NHY3 880 aa20.56■□□□□ 0.88
TPM1-228ENST00000560975 ARID3AQ99856 593 aa20.56■□□□□ 0.88
TPM1-228ENST00000560975 K7ELQ4 463 aaPredicted RBP20.56■□□□□ 0.88
TPM1-228ENST00000560975 NUCB1Q02818 461 aa20.55■□□□□ 0.88
TPM1-228ENST00000560975 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
TPM1-228ENST00000560975 PTMSP20962 102 aa20.54■□□□□ 0.88
TPM1-228ENST00000560975 CHD1LQ86WJ1 897 aa20.54■□□□□ 0.88
TPM1-228ENST00000560975 STAC3Q96MF2 364 aa20.54■□□□□ 0.88
TPM1-228ENST00000560975 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.53■□□□□ 0.88
TPM1-228ENST00000560975 ZBTB40Q9NUA8 1239 aa20.53■□□□□ 0.88
TPM1-228ENST00000560975 TRAK1Q9UPV9 953 aa20.53■□□□□ 0.88
TPM1-228ENST00000560975 CLTCL1P53675 1640 aa20.53■□□□□ 0.88
TPM1-228ENST00000560975 KANK1Q14678 1352 aa20.52■□□□□ 0.88
TPM1-228ENST00000560975 SLC24A1O60721 1099 aa20.52■□□□□ 0.88
TPM1-228ENST00000560975 BAG4O95429 457 aaKnown RBP20.52■□□□□ 0.88
TPM1-228ENST00000560975 ANKRD45Q5TZF3 282 aa20.52■□□□□ 0.88
TPM1-228ENST00000560975 U2SURPO15042 1029 aaKnown RBP20.52■□□□□ 0.88
TPM1-228ENST00000560975 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
TPM1-228ENST00000560975 CAVIN1Q6NZI2 390 aaKnown RBP20.51■□□□□ 0.87
TPM1-228ENST00000560975 TRPM2O94759 1503 aa20.51■□□□□ 0.87
TPM1-228ENST00000560975 KLHL40Q2TBA0 621 aa20.51■□□□□ 0.87
TPM1-228ENST00000560975 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms