RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 NPHP3Q7Z494 1330 aa14.92□□□□□ -0.02
HERC1-210ENST00000560897 METP08581 1390 aa14.92□□□□□ -0.02
HERC1-210ENST00000560897 GLI3P10071 1580 aa14.92□□□□□ -0.02
HERC1-210ENST00000560897 ZNF326Q5BKZ1 582 aaKnown RBP14.91□□□□□ -0.02
HERC1-210ENST00000560897 SEPT12Q8IYM1 358 aa14.91□□□□□ -0.02
HERC1-210ENST00000560897 E9PCH4 1651 aa14.9□□□□□ -0.02
HERC1-210ENST00000560897 DCAF8L1A6NGE4 600 aa14.9□□□□□ -0.02
HERC1-210ENST00000560897 IQGAP3Q86VI3 1631 aa14.9□□□□□ -0.02
HERC1-210ENST00000560897 ADGRL2O95490 1459 aa14.89□□□□□ -0.03
HERC1-210ENST00000560897 A0A0G2JS52 829 aa14.89□□□□□ -0.03
HERC1-210ENST00000560897 MYT1Q01538 1121 aa14.89□□□□□ -0.03
HERC1-210ENST00000560897 KRT27Q7Z3Y8 459 aa14.89□□□□□ -0.03
HERC1-210ENST00000560897 CCDC9Q9Y3X0 531 aaKnown RBP14.89□□□□□ -0.03
HERC1-210ENST00000560897 R3HDM1Q15032 1099 aaKnown RBP14.88□□□□□ -0.03
HERC1-210ENST00000560897 ESCO1Q5FWF5 840 aa14.87□□□□□ -0.03
HERC1-210ENST00000560897 SLIT2O94813 1529 aa14.87□□□□□ -0.03
HERC1-210ENST00000560897 LRPPRCP42704 1394 aaKnown RBP14.86□□□□□ -0.03
HERC1-210ENST00000560897 HAP1P54257 671 aaPredicted RBP14.86□□□□□ -0.03
HERC1-210ENST00000560897 APLP2Q06481 763 aa14.86□□□□□ -0.03
HERC1-210ENST00000560897 XPCQ01831 940 aaPredicted RBP14.84□□□□□ -0.03
HERC1-210ENST00000560897 EN1Q05925 392 aaPredicted RBP14.84□□□□□ -0.03
HERC1-210ENST00000560897 RGPD1P0DJD0 1748 aa14.83□□□□□ -0.03
HERC1-210ENST00000560897 PXDNQ92626 1479 aa14.83□□□□□ -0.03
HERC1-210ENST00000560897 VPS72Q15906 364 aa14.83□□□□□ -0.04
HERC1-210ENST00000560897 USP32Q8NFA0 1604 aa14.82□□□□□ -0.04
HERC1-210ENST00000560897 FOXO3O43524 673 aa14.82□□□□□ -0.04
HERC1-210ENST00000560897 IFFO2Q5TF58 517 aa14.81□□□□□ -0.04
HERC1-210ENST00000560897 PPP1R1BQ9UD71 204 aaPredicted RBP14.8□□□□□ -0.04
HERC1-210ENST00000560897 ROBO2Q9HCK4 1378 aa14.8□□□□□ -0.04
HERC1-210ENST00000560897 HFM1A2PYH4 1435 aa14.8□□□□□ -0.04
HERC1-210ENST00000560897 FAM50AQ14320 339 aaKnown RBP14.79□□□□□ -0.04
HERC1-210ENST00000560897 NWD2Q9ULI1 1742 aa14.79□□□□□ -0.04
HERC1-210ENST00000560897 ONECUT3O60422 494 aaPredicted RBP14.78□□□□□ -0.04
HERC1-210ENST00000560897 PLCH1Q4KWH8 1693 aa14.77□□□□□ -0.04
HERC1-210ENST00000560897 CDC42BPGQ6DT37 1551 aa14.77□□□□□ -0.04
HERC1-210ENST00000560897 SENP3-EIF4A1A0A087X0R7 540 aa14.77□□□□□ -0.05
HERC1-210ENST00000560897 NUP155O75694 1391 aa14.76□□□□□ -0.05
HERC1-210ENST00000560897 ADGRB2O60241 1585 aa14.76□□□□□ -0.05
HERC1-210ENST00000560897 NEXMIFQ5QGS0 1516 aa14.76□□□□□ -0.05
HERC1-210ENST00000560897 SPATA31A3Q5VYP0 1347 aa14.75□□□□□ -0.05
HERC1-210ENST00000560897 CCDC144AA2RUR9 1427 aa14.75□□□□□ -0.05
HERC1-210ENST00000560897 DISP2A7MBM2 1401 aa14.75□□□□□ -0.05
HERC1-210ENST00000560897 PLEKHG5O94827 1062 aa14.74□□□□□ -0.05
HERC1-210ENST00000560897 FAM98CQ17RN3 349 aaKnown RBP14.74□□□□□ -0.05
HERC1-210ENST00000560897 NUTM2FA1L443 756 aa14.73□□□□□ -0.05
HERC1-210ENST00000560897 EZH2Q15910 746 aaKnown RBP14.73□□□□□ -0.05
HERC1-210ENST00000560897 PRAG1Q86YV5 1406 aa14.73□□□□□ -0.05
HERC1-210ENST00000560897 KIF1AQ12756 1690 aa14.72□□□□□ -0.05
HERC1-210ENST00000560897 TNS1Q9HBL0 1735 aaKnown RBP14.72□□□□□ -0.05
HERC1-210ENST00000560897 NINLQ9Y2I6 1382 aa14.72□□□□□ -0.05
HERC1-210ENST00000560897 KIF1BO60333 1816 aa14.71□□□□□ -0.05
HERC1-210ENST00000560897 VGFO15240 615 aaPredicted RBP14.71□□□□□ -0.05
HERC1-210ENST00000560897 NBPF8Q3BBV2 869 aa14.71□□□□□ -0.05
HERC1-210ENST00000560897 NBPF14Q5TI25 921 aa14.71□□□□□ -0.05
HERC1-210ENST00000560897 TNS3Q68CZ2 1445 aa14.7□□□□□ -0.06
HERC1-210ENST00000560897 LMOD2Q6P5Q4 547 aa14.7□□□□□ -0.06
HERC1-210ENST00000560897 SPON1Q9HCB6 807 aa14.7□□□□□ -0.06
HERC1-210ENST00000560897 PARD3Q8TEW0 1356 aa14.7□□□□□ -0.06
HERC1-210ENST00000560897 NAIPQ13075 1403 aa14.69□□□□□ -0.06
HERC1-210ENST00000560897 PSME1Q06323 249 aa14.69□□□□□ -0.06
HERC1-210ENST00000560897 FAM182BQ5T319 152 aa14.69□□□□□ -0.06
HERC1-210ENST00000560897 KRT28Q7Z3Y7 464 aa14.69□□□□□ -0.06
HERC1-210ENST00000560897 CABLES1Q8TDN4 633 aa14.69□□□□□ -0.06
HERC1-210ENST00000560897 ZNF784Q8NCA9 323 aaPredicted RBP14.67□□□□□ -0.06
HERC1-210ENST00000560897 CLTCL1P53675 1640 aa14.66□□□□□ -0.06
HERC1-210ENST00000560897 ARHGEF10O15013 1369 aa14.66□□□□□ -0.06
HERC1-210ENST00000560897 APBA3O96018 575 aa14.66□□□□□ -0.06
HERC1-210ENST00000560897 CAMKK2Q96RR4 588 aa14.66□□□□□ -0.06
HERC1-210ENST00000560897 NRAPQ86VF7 1730 aa14.66□□□□□ -0.06
HERC1-210ENST00000560897 ABCA3Q99758 1704 aa14.66□□□□□ -0.06
HERC1-210ENST00000560897 ROCK1Q13464 1354 aa14.65□□□□□ -0.06
HERC1-210ENST00000560897 KCNQ2O43526 872 aa14.65□□□□□ -0.06
HERC1-210ENST00000560897 TRIM37O94972 964 aa14.65□□□□□ -0.06
HERC1-210ENST00000560897 BTG4Q9NY30 223 aa14.65□□□□□ -0.06
HERC1-210ENST00000560897 FAM83GA6ND36 823 aa14.64□□□□□ -0.07
HERC1-210ENST00000560897 FAM196AQ6ZSG2 479 aa14.64□□□□□ -0.07
HERC1-210ENST00000560897 ADRA2BP18089 450 aa14.63□□□□□ -0.07
HERC1-210ENST00000560897 C1QTNF8P60827 252 aa14.63□□□□□ -0.07
HERC1-210ENST00000560897 FMN2Q9NZ56 1722 aa14.63□□□□□ -0.07
HERC1-210ENST00000560897 RREB1Q92766 1687 aa14.62□□□□□ -0.07
HERC1-210ENST00000560897 CAMTA1Q9Y6Y1 1673 aa14.62□□□□□ -0.07
HERC1-210ENST00000560897 SBNO1A3KN83 1393 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 NUP188Q5SRE5 1749 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 COL14A1Q05707 1796 aaKnown RBP14.61□□□□□ -0.07
HERC1-210ENST00000560897 STK26Q9P289 416 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 PHF8Q9UPP1 1060 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 THSD7AQ9UPZ6 1657 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 SPATA31A5Q5VU36 1347 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 RPGRIP1LQ68CZ1 1315 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 SPATA31A7Q8IWB4 1347 aa14.61□□□□□ -0.07
HERC1-210ENST00000560897 WAPLQ7Z5K2 1190 aa14.6□□□□□ -0.07
HERC1-210ENST00000560897 RRBP1Q9P2E9 1410 aaKnown RBP14.58□□□□□ -0.08
HERC1-210ENST00000560897 CHD4Q14839 1912 aa14.57□□□□□ -0.08
HERC1-210ENST00000560897 PPLO60437 1756 aa14.57□□□□□ -0.08
HERC1-210ENST00000560897 RGPD8O14715 1765 aaPredicted RBP14.56□□□□□ -0.08
HERC1-210ENST00000560897 PDE3BQ13370 1112 aa14.56□□□□□ -0.08
HERC1-210ENST00000560897 TECPR2O15040 1411 aa14.56□□□□□ -0.08
HERC1-210ENST00000560897 NRXN1Q9ULB1 1477 aa14.56□□□□□ -0.08
HERC1-210ENST00000560897 IFT172Q9UG01 1749 aa14.55□□□□□ -0.08
HERC1-210ENST00000560897 KNDC1Q76NI1 1749 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms