RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 PRAM1Q96QH2 718 aa16.43■□□□□ 0.22
TRAF3-208ENST00000560371 FAM161AQ3B820 660 aa16.43■□□□□ 0.22
TRAF3-208ENST00000560371 SMG6Q86US8 1419 aaKnown RBP16.43■□□□□ 0.22
TRAF3-208ENST00000560371 SF3B2Q13435 895 aaKnown RBP16.43■□□□□ 0.22
TRAF3-208ENST00000560371 GOLGA6L19H0YKK7 550 aa16.42■□□□□ 0.22
TRAF3-208ENST00000560371 GOLGA6L3A6NEY3 463 aa16.42■□□□□ 0.22
TRAF3-208ENST00000560371 NFXL1Q6ZNB6 911 aa16.42■□□□□ 0.22
TRAF3-208ENST00000560371 ERC2O15083 957 aa16.42■□□□□ 0.22
TRAF3-208ENST00000560371 SCAPERQ9BY12 1400 aa16.42■□□□□ 0.22
TRAF3-208ENST00000560371 DEKP35659 375 aaKnown RBP16.42■□□□□ 0.22
TRAF3-208ENST00000560371 GAS2L2Q8NHY3 880 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 ANO2Q9NQ90 1003 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 SUPT6HQ7KZ85 1726 aaKnown RBP16.41■□□□□ 0.22
TRAF3-208ENST00000560371 PLEKHO1Q53GL0 409 aaPredicted RBP16.41■□□□□ 0.22
TRAF3-208ENST00000560371 ANKLE2Q86XL3 938 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 CCDC27Q2M243 656 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 SAMD1Q6SPF0 538 aaPredicted RBP16.41■□□□□ 0.22
TRAF3-208ENST00000560371 SLC52A1Q9NWF4 448 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 PLEKHH2Q8IVE3 1493 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 TPM2P07951 284 aa16.41■□□□□ 0.22
TRAF3-208ENST00000560371 KIF6Q6ZMV9 814 aa16.4■□□□□ 0.22
TRAF3-208ENST00000560371 CFTRP13569 1480 aa16.4■□□□□ 0.22
TRAF3-208ENST00000560371 UBTFL1P0CB47 393 aaPredicted RBP16.4■□□□□ 0.22
TRAF3-208ENST00000560371 EXOC6Q8TAG9 804 aa16.4■□□□□ 0.22
TRAF3-208ENST00000560371 NUTM2BA6NNL0 878 aaPredicted RBP16.39■□□□□ 0.21
TRAF3-208ENST00000560371 BECN2A8MW95 431 aa16.39■□□□□ 0.21
TRAF3-208ENST00000560371 NUTM2EB1AL46 878 aaPredicted RBP16.39■□□□□ 0.21
TRAF3-208ENST00000560371 NUTM2AQ8IVF1 878 aaPredicted RBP16.39■□□□□ 0.21
TRAF3-208ENST00000560371 RAPGEF3O95398 923 aa16.39■□□□□ 0.21
TRAF3-208ENST00000560371 POGZQ7Z3K3 1410 aa16.39■□□□□ 0.21
TRAF3-208ENST00000560371 CCDC43Q96MW1 224 aaKnown RBP16.39■□□□□ 0.21
TRAF3-208ENST00000560371 ERICH3Q5RHP9 1530 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 C9orf84Q5VXU9 1444 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 RALYLQ86SE5 291 aaKnown RBP16.38■□□□□ 0.21
TRAF3-208ENST00000560371 HECW1Q76N89 1606 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 FAM177BA6PVY3 158 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 RBM42Q9BTD8 480 aaKnown RBP16.38■□□□□ 0.21
TRAF3-208ENST00000560371 DDX11L8A8MPP1 907 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 TPM1P09493 284 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 TATP17735 454 aaPredicted RBP16.38■□□□□ 0.21
TRAF3-208ENST00000560371 CCDC30Q5VVM6 783 aa16.38■□□□□ 0.21
TRAF3-208ENST00000560371 TOPBP1Q92547 1522 aa16.37■□□□□ 0.21
TRAF3-208ENST00000560371 TOM1L2Q6ZVM7 507 aa16.37■□□□□ 0.21
TRAF3-208ENST00000560371 PPP1R1BQ9UD71 204 aaPredicted RBP16.37■□□□□ 0.21
TRAF3-208ENST00000560371 WASHC4Q2M389 1173 aa16.37■□□□□ 0.21
TRAF3-208ENST00000560371 KIF7Q2M1P5 1343 aa16.37■□□□□ 0.21
TRAF3-208ENST00000560371 CCDC7Q96M83 1385 aa16.37■□□□□ 0.21
TRAF3-208ENST00000560371 CCDC47Q96A33 483 aaKnown RBP16.37■□□□□ 0.21
TRAF3-208ENST00000560371 FYB1O15117 783 aa16.37■□□□□ 0.21
TRAF3-208ENST00000560371 SNAPC4Q5SXM2 1469 aa16.36■□□□□ 0.21
TRAF3-208ENST00000560371 EFCAB5A4FU69 1503 aa16.36■□□□□ 0.21
TRAF3-208ENST00000560371 SYNJ1O43426 1573 aa16.36■□□□□ 0.21
TRAF3-208ENST00000560371 DDX49Q9Y6V7 483 aaKnown RBP16.36■□□□□ 0.21
TRAF3-208ENST00000560371 ZNF692Q9BU19 519 aaPredicted RBP16.36■□□□□ 0.21
TRAF3-208ENST00000560371 SLC26A8Q96RN1 970 aa16.36■□□□□ 0.21
TRAF3-208ENST00000560371 LNPKQ9C0E8 428 aa16.35■□□□□ 0.21
TRAF3-208ENST00000560371 INTS3Q68E01 1043 aaKnown RBP16.35■□□□□ 0.21
TRAF3-208ENST00000560371 CDK19Q9BWU1 502 aa16.35■□□□□ 0.21
TRAF3-208ENST00000560371 PIP4K2BP78356 416 aa16.34■□□□□ 0.21
TRAF3-208ENST00000560371 HOOK1Q9UJC3 728 aaKnown RBP16.34■□□□□ 0.21
TRAF3-208ENST00000560371 SAFBQ15424 915 aaKnown RBP eCLIP16.34■□□□□ 0.21
TRAF3-208ENST00000560371 DDX54Q8TDD1 881 aaKnown RBP16.34■□□□□ 0.21
TRAF3-208ENST00000560371 PDE4AP27815 886 aa16.34■□□□□ 0.21
TRAF3-208ENST00000560371 CLASRPQ8N2M8 674 aaKnown RBP16.34■□□□□ 0.21
TRAF3-208ENST00000560371 HFM1A2PYH4 1435 aa16.33■□□□□ 0.21
TRAF3-208ENST00000560371 EHBP1L1Q8N3D4 1523 aa16.33■□□□□ 0.21
TRAF3-208ENST00000560371 GOLGA6L1Q8N7Z2 621 aa16.33■□□□□ 0.2
TRAF3-208ENST00000560371 CNTLNQ9NXG0 1405 aa16.32■□□□□ 0.2
TRAF3-208ENST00000560371 PRKAR2BP31323 418 aa16.32■□□□□ 0.2
TRAF3-208ENST00000560371 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
TRAF3-208ENST00000560371 PRDM11Q9NQV5 511 aa16.32■□□□□ 0.2
TRAF3-208ENST00000560371 ANKRD20A12PQ8NF67 263 aa16.32■□□□□ 0.2
TRAF3-208ENST00000560371 IKQ13123 557 aaPredicted RBP16.32■□□□□ 0.2
TRAF3-208ENST00000560371 CABP4P57796 275 aa16.31■□□□□ 0.2
TRAF3-208ENST00000560371 TBC1D2BQ9UPU7 963 aa16.31■□□□□ 0.2
TRAF3-208ENST00000560371 TOP2BQ02880 1626 aa16.31■□□□□ 0.2
TRAF3-208ENST00000560371 POLA1P09884 1462 aaPredicted RBP16.31■□□□□ 0.2
TRAF3-208ENST00000560371 PCMTD1Q96MG8 357 aaPredicted RBP16.31■□□□□ 0.2
TRAF3-208ENST00000560371 GNAI3P08754 354 aa16.31■□□□□ 0.2
TRAF3-208ENST00000560371 SLC12A5Q9H2X9 1139 aa16.31■□□□□ 0.2
TRAF3-208ENST00000560371 CABP1Q9NZU7 370 aa16.3■□□□□ 0.2
TRAF3-208ENST00000560371 TCP11L2Q8N4U5 519 aa16.3■□□□□ 0.2
TRAF3-208ENST00000560371 TROQ12816 1431 aaPredicted RBP16.3■□□□□ 0.2
TRAF3-208ENST00000560371 SULT6B1Q6IMI4 303 aa16.3■□□□□ 0.2
TRAF3-208ENST00000560371 DNMBPQ6XZF7 1577 aa16.29■□□□□ 0.2
TRAF3-208ENST00000560371 ADAMTS8Q9UP79 889 aa16.29■□□□□ 0.2
TRAF3-208ENST00000560371 NINLQ9Y2I6 1382 aa16.29■□□□□ 0.2
TRAF3-208ENST00000560371 IPO7O95373 1038 aaKnown RBP16.29■□□□□ 0.2
TRAF3-208ENST00000560371 BICD2Q8TD16 824 aa16.29■□□□□ 0.2
TRAF3-208ENST00000560371 SMC3Q9UQE7 1217 aa16.29■□□□□ 0.2
TRAF3-208ENST00000560371 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
TRAF3-208ENST00000560371 SURF6O75683 361 aaKnown RBP16.29■□□□□ 0.2
TRAF3-208ENST00000560371 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.28■□□□□ 0.2
TRAF3-208ENST00000560371 SKOR2Q2VWA4 1001 aaPredicted RBP16.28■□□□□ 0.2
TRAF3-208ENST00000560371 VPS37CA5D8V6 355 aaPredicted RBP16.28■□□□□ 0.2
TRAF3-208ENST00000560371 CNTROBQ8N137 903 aa16.28■□□□□ 0.2
TRAF3-208ENST00000560371 SPG7Q9UQ90 795 aa16.28■□□□□ 0.2
TRAF3-208ENST00000560371 CCAR1Q8IX12 1150 aaKnown RBP16.28■□□□□ 0.2
TRAF3-208ENST00000560371 CNNM1Q9NRU3 951 aa16.28■□□□□ 0.2
TRAF3-208ENST00000560371 PANK1Q8TE04 598 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms