RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PLPPR3Q6T4P5 718 aa17.21■□□□□ 0.35
USP3-213ENST00000559711 ADAMTS13Q76LX8 1427 aa17.21■□□□□ 0.35
USP3-213ENST00000559711 SLC12A5Q9H2X9 1139 aa17.2■□□□□ 0.34
USP3-213ENST00000559711 ADAMTSL3P82987 1691 aa17.2■□□□□ 0.34
USP3-213ENST00000559711 SCAF1Q9H7N4 1312 aaKnown RBP17.2■□□□□ 0.34
USP3-213ENST00000559711 TECPR2O15040 1411 aa17.2■□□□□ 0.34
USP3-213ENST00000559711 HNRNPUQ00839 825 aaKnown RBP eCLIP17.19■□□□□ 0.34
USP3-213ENST00000559711 CABP2Q9NPB3 220 aa17.19■□□□□ 0.34
USP3-213ENST00000559711 MED14O60244 1454 aa17.19■□□□□ 0.34
USP3-213ENST00000559711 MINK1Q8N4C8 1332 aaPredicted RBP17.18■□□□□ 0.34
USP3-213ENST00000559711 BCANQ96GW7 911 aa17.18■□□□□ 0.34
USP3-213ENST00000559711 NINLQ9Y2I6 1382 aa17.18■□□□□ 0.34
USP3-213ENST00000559711 FAM135BQ49AJ0 1406 aa17.18■□□□□ 0.34
USP3-213ENST00000559711 WAPLQ7Z5K2 1190 aa17.17■□□□□ 0.34
USP3-213ENST00000559711 ATAD2Q6PL18 1390 aa17.17■□□□□ 0.34
USP3-213ENST00000559711 PLEKHH1Q9ULM0 1364 aa17.16■□□□□ 0.34
USP3-213ENST00000559711 SRPK2P78362 688 aaKnown RBP17.16■□□□□ 0.34
USP3-213ENST00000559711 TBX22Q9Y458 520 aa17.16■□□□□ 0.34
USP3-213ENST00000559711 GTF3C3Q9Y5Q9 886 aa17.16■□□□□ 0.34
USP3-213ENST00000559711 RIMS1Q86UR5 1692 aaKnown RBP17.16■□□□□ 0.34
USP3-213ENST00000559711 CDK19Q9BWU1 502 aa17.15■□□□□ 0.34
USP3-213ENST00000559711 ANKRD36BQ8N2N9 1353 aa17.14■□□□□ 0.34
USP3-213ENST00000559711 PPP2R1AP30153 589 aa17.13■□□□□ 0.33
USP3-213ENST00000559711 CEP170BQ9Y4F5 1589 aaPredicted RBP17.13■□□□□ 0.33
USP3-213ENST00000559711 NSD3Q9BZ95 1437 aa17.13■□□□□ 0.33
USP3-213ENST00000559711 CPS1P31327 1500 aa17.12■□□□□ 0.33
USP3-213ENST00000559711 ZBED9Q6R2W3 1325 aa17.11■□□□□ 0.33
USP3-213ENST00000559711 KNDC1Q76NI1 1749 aa17.11■□□□□ 0.33
USP3-213ENST00000559711 SLC26A8Q96RN1 970 aa17.1■□□□□ 0.33
USP3-213ENST00000559711 WASLO00401 505 aaPredicted RBP17.1■□□□□ 0.33
USP3-213ENST00000559711 INSRP06213 1382 aa17.1■□□□□ 0.33
USP3-213ENST00000559711 ROBO2Q9HCK4 1378 aa17.1■□□□□ 0.33
USP3-213ENST00000559711 CGNL1Q0VF96 1302 aa17.09■□□□□ 0.33
USP3-213ENST00000559711 PTPRUQ92729 1446 aa17.08■□□□□ 0.32
USP3-213ENST00000559711 TERF2IPQ9NYB0 399 aa17.08■□□□□ 0.32
USP3-213ENST00000559711 DIP2AQ14689 1571 aa17.08■□□□□ 0.32
USP3-213ENST00000559711 A0A1W2PP64 1363 aa17.07■□□□□ 0.32
USP3-213ENST00000559711 USP32Q8NFA0 1604 aa17.07■□□□□ 0.32
USP3-213ENST00000559711 NSD2O96028 1365 aa17.07■□□□□ 0.32
USP3-213ENST00000559711 ANKLE2Q86XL3 938 aa17.07■□□□□ 0.32
USP3-213ENST00000559711 CD163L1Q9NR16 1453 aa17.06■□□□□ 0.32
USP3-213ENST00000559711 CABP1Q9NZU7 370 aa17.06■□□□□ 0.32
USP3-213ENST00000559711 AMOTL2Q9Y2J4 779 aa17.06■□□□□ 0.32
USP3-213ENST00000559711 ZNF142P52746 1687 aaPredicted RBP17.05■□□□□ 0.32
USP3-213ENST00000559711 SETD1BQ9UPS6 1966 aaKnown RBP17.05■□□□□ 0.32
USP3-213ENST00000559711 PIK3R4Q99570 1358 aa17.05■□□□□ 0.32
USP3-213ENST00000559711 MORC1Q86VD1 984 aa17.04■□□□□ 0.32
USP3-213ENST00000559711 HDGFL2Q7Z4V5 671 aaPredicted RBP17.04■□□□□ 0.32
USP3-213ENST00000559711 PTCH1Q13635 1447 aa17.03■□□□□ 0.32
USP3-213ENST00000559711 ATP7BP35670 1465 aa17.02■□□□□ 0.31
USP3-213ENST00000559711 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
USP3-213ENST00000559711 CCDC61Q9Y6R9 512 aa17.01■□□□□ 0.31
USP3-213ENST00000559711 ADGRB2O60241 1585 aa16.99■□□□□ 0.31
USP3-213ENST00000559711 ADAMTS8Q9UP79 889 aa16.99■□□□□ 0.31
USP3-213ENST00000559711 POLR3AO14802 1390 aaPredicted RBP16.99■□□□□ 0.31
USP3-213ENST00000559711 BLMP54132 1417 aaPredicted RBP16.99■□□□□ 0.31
USP3-213ENST00000559711 CPSF1Q10570 1443 aaKnown RBP16.99■□□□□ 0.31
USP3-213ENST00000559711 FYB1O15117 783 aa16.98■□□□□ 0.31
USP3-213ENST00000559711 PPIP5K1Q6PFW1 1433 aa16.98■□□□□ 0.31
USP3-213ENST00000559711 PRR36Q9H6K5 1346 aa16.97■□□□□ 0.31
USP3-213ENST00000559711 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.97■□□□□ 0.31
USP3-213ENST00000559711 WDR43Q15061 677 aaKnown RBP eCLIP16.97■□□□□ 0.31
USP3-213ENST00000559711 KCNA6P17658 529 aa16.96■□□□□ 0.31
USP3-213ENST00000559711 XRN1Q8IZH2 1706 aaKnown RBP16.96■□□□□ 0.31
USP3-213ENST00000559711 ZNF692Q9BU19 519 aaPredicted RBP16.94■□□□□ 0.3
USP3-213ENST00000559711 GGNBP2Q9H3C7 697 aa16.94■□□□□ 0.3
USP3-213ENST00000559711 EDC4Q6P2E9 1401 aaKnown RBP16.94■□□□□ 0.3
USP3-213ENST00000559711 PLEKHG3A1L390 1219 aa16.94■□□□□ 0.3
USP3-213ENST00000559711 TNNT2P45379 298 aaPredicted RBP16.94■□□□□ 0.3
USP3-213ENST00000559711 NPHP4O75161 1426 aaPredicted RBP16.93■□□□□ 0.3
USP3-213ENST00000559711 MTHFSP49914 203 aa16.93■□□□□ 0.3
USP3-213ENST00000559711 NCKAP5LQ9HCH0 1330 aa16.93■□□□□ 0.3
USP3-213ENST00000559711 SMG6Q86US8 1419 aaKnown RBP16.92■□□□□ 0.3
USP3-213ENST00000559711 CDC42BPGQ6DT37 1551 aa16.91■□□□□ 0.3
USP3-213ENST00000559711 PDE3BQ13370 1112 aa16.9■□□□□ 0.3
USP3-213ENST00000559711 CFAP53Q96M91 514 aa16.9■□□□□ 0.3
USP3-213ENST00000559711 NUDCQ9Y266 331 aa16.89■□□□□ 0.29
USP3-213ENST00000559711 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.88■□□□□ 0.29
USP3-213ENST00000559711 SENP3-EIF4A1A0A087X0R7 540 aa16.88■□□□□ 0.29
USP3-213ENST00000559711 ACEP12821 1306 aa16.87■□□□□ 0.29
USP3-213ENST00000559711 SUPT16HQ9Y5B9 1047 aaKnown RBP16.86■□□□□ 0.29
USP3-213ENST00000559711 ANKARQ7Z5J8 1434 aa16.86■□□□□ 0.29
USP3-213ENST00000559711 CHD2O14647 1828 aaKnown RBP16.85■□□□□ 0.29
USP3-213ENST00000559711 TOPAZ1Q8N9V7 1692 aa16.85■□□□□ 0.29
USP3-213ENST00000559711 NUTM2FA1L443 756 aa16.85■□□□□ 0.29
USP3-213ENST00000559711 NME9Q86XW9 330 aa16.85■□□□□ 0.29
USP3-213ENST00000559711 ANKRD26Q9UPS8 1709 aa16.84■□□□□ 0.29
USP3-213ENST00000559711 PNPLA6Q8IY17 1366 aa16.84■□□□□ 0.29
USP3-213ENST00000559711 NEFLP07196 543 aa16.84■□□□□ 0.29
USP3-213ENST00000559711 NGEFQ8N5V2 710 aa16.84■□□□□ 0.29
USP3-213ENST00000559711 SALL2Q9Y467 1007 aaPredicted RBP16.84■□□□□ 0.29
USP3-213ENST00000559711 TTC21BQ7Z4L5 1316 aa16.83■□□□□ 0.29
USP3-213ENST00000559711 NKTRP30414 1462 aaKnown RBP16.83■□□□□ 0.28
USP3-213ENST00000559711 KDM4FA0A1W2PPD8 638 aa16.83■□□□□ 0.28
USP3-213ENST00000559711 USP6P35125 1406 aa16.82■□□□□ 0.28
USP3-213ENST00000559711 SSH2Q76I76 1423 aa16.82■□□□□ 0.28
USP3-213ENST00000559711 MON2Q7Z3U7 1717 aa16.82■□□□□ 0.28
USP3-213ENST00000559711 AATKQ6ZMQ8 1374 aa16.82■□□□□ 0.28
USP3-213ENST00000559711 ZNF521Q96K83 1311 aa16.82■□□□□ 0.28
USP3-213ENST00000559711 FKBP8Q14318 412 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms