RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 USP19O94966 1318 aa15.91■□□□□ 0.14
LDLR-205ENST00000557933 ZNF521Q96K83 1311 aa15.91■□□□□ 0.14
LDLR-205ENST00000557933 ARHGAP31Q2M1Z3 1444 aa15.91■□□□□ 0.14
LDLR-205ENST00000557933 RLBP1P12271 317 aa15.91■□□□□ 0.14
LDLR-205ENST00000557933 YEATS2Q9ULM3 1422 aa15.9■□□□□ 0.14
LDLR-205ENST00000557933 NUTM2DQ5VT03 806 aaPredicted RBP15.9■□□□□ 0.14
LDLR-205ENST00000557933 PPP6R1Q9UPN7 881 aa15.89■□□□□ 0.13
LDLR-205ENST00000557933 CARD14Q9BXL6 1004 aa15.89■□□□□ 0.13
LDLR-205ENST00000557933 PCDHB15Q9Y5E8 787 aa15.88■□□□□ 0.13
LDLR-205ENST00000557933 CENPJQ9HC77 1338 aaPredicted RBP15.87■□□□□ 0.13
LDLR-205ENST00000557933 RAPGEF3O95398 923 aa15.87■□□□□ 0.13
LDLR-205ENST00000557933 GPRASP1Q5JY77 1395 aa15.86■□□□□ 0.13
LDLR-205ENST00000557933 SIGLEC1Q9BZZ2 1709 aa15.86■□□□□ 0.13
LDLR-205ENST00000557933 SAFB2Q14151 953 aaKnown RBP eCLIP15.86■□□□□ 0.13
LDLR-205ENST00000557933 PIK3C2BO00750 1634 aa15.85■□□□□ 0.13
LDLR-205ENST00000557933 MROH2AA6NES4 1674 aa15.85■□□□□ 0.13
LDLR-205ENST00000557933 WWC1Q8IX03 1113 aa15.84■□□□□ 0.13
LDLR-205ENST00000557933 TRAK1Q9UPV9 953 aa15.84■□□□□ 0.13
LDLR-205ENST00000557933 PANK2Q9BZ23 570 aa15.83■□□□□ 0.12
LDLR-205ENST00000557933 SLC12A5Q9H2X9 1139 aa15.83■□□□□ 0.12
LDLR-205ENST00000557933 E9PSI1 815 aa15.82■□□□□ 0.12
LDLR-205ENST00000557933 CLTCL1P53675 1640 aa15.82■□□□□ 0.12
LDLR-205ENST00000557933 MFAP1P55081 439 aaKnown RBP15.82■□□□□ 0.12
LDLR-205ENST00000557933 TSR2Q969E8 191 aaKnown RBP15.82■□□□□ 0.12
LDLR-205ENST00000557933 PDZRN3Q9UPQ7 1066 aa15.82■□□□□ 0.12
LDLR-205ENST00000557933 TMEM132EQ6IEE7 984 aa15.81■□□□□ 0.12
LDLR-205ENST00000557933 NKTRP30414 1462 aaKnown RBP15.81■□□□□ 0.12
LDLR-205ENST00000557933 KIF3BO15066 747 aa15.81■□□□□ 0.12
LDLR-205ENST00000557933 RRAGDQ9NQL2 400 aaPredicted RBP15.81■□□□□ 0.12
LDLR-205ENST00000557933 ADGRF5Q8IZF2 1346 aa15.81■□□□□ 0.12
LDLR-205ENST00000557933 IFT172Q9UG01 1749 aa15.81■□□□□ 0.12
LDLR-205ENST00000557933 TCP11L2Q8N4U5 519 aa15.8■□□□□ 0.12
LDLR-205ENST00000557933 LAMC1P11047 1609 aa15.8■□□□□ 0.12
LDLR-205ENST00000557933 KIF1BO60333 1816 aa15.8■□□□□ 0.12
LDLR-205ENST00000557933 TBC1D2Q9BYX2 928 aa15.8■□□□□ 0.12
LDLR-205ENST00000557933 NOS1P29475 1434 aa15.8■□□□□ 0.12
LDLR-205ENST00000557933 PREX1Q8TCU6 1659 aa15.79■□□□□ 0.12
LDLR-205ENST00000557933 MORC1Q86VD1 984 aa15.79■□□□□ 0.12
LDLR-205ENST00000557933 TRMT2AQ8IZ69 625 aaKnown RBP15.79■□□□□ 0.12
LDLR-205ENST00000557933 FOXD4L1Q9NU39 408 aa15.79■□□□□ 0.12
LDLR-205ENST00000557933 NPATQ14207 1427 aa15.78■□□□□ 0.12
LDLR-205ENST00000557933 STAC3Q96MF2 364 aa15.78■□□□□ 0.12
LDLR-205ENST00000557933 ADGRB3O60242 1522 aa15.77■□□□□ 0.11
LDLR-205ENST00000557933 RARSP54136 660 aaKnown RBP15.77■□□□□ 0.11
LDLR-205ENST00000557933 KDM5AP29375 1690 aaKnown RBP15.76■□□□□ 0.11
LDLR-205ENST00000557933 BECN1Q14457 450 aa15.76■□□□□ 0.11
LDLR-205ENST00000557933 KIAA1210Q9ULL0 1709 aa15.76■□□□□ 0.11
LDLR-205ENST00000557933 MTHFSP49914 203 aa15.75■□□□□ 0.11
LDLR-205ENST00000557933 CDCA8Q53HL2 280 aa15.75■□□□□ 0.11
LDLR-205ENST00000557933 SYNMO15061 1565 aa15.75■□□□□ 0.11
LDLR-205ENST00000557933 SPATA31D1Q6ZQQ2 1576 aa15.75■□□□□ 0.11
LDLR-205ENST00000557933 EIF3AQ14152 1382 aaKnown RBP15.75■□□□□ 0.11
LDLR-205ENST00000557933 CGNL1Q0VF96 1302 aa15.75■□□□□ 0.11
LDLR-205ENST00000557933 CLTCQ00610 1675 aaKnown RBP15.75■□□□□ 0.11
LDLR-205ENST00000557933 U2AF1L5P0DN76 240 aaPredicted RBP15.74■□□□□ 0.11
LDLR-205ENST00000557933 U2AF1Q01081 240 aaKnown RBP eCLIP15.74■□□□□ 0.11
LDLR-205ENST00000557933 UPF2Q9HAU5 1272 aaKnown RBP15.74■□□□□ 0.11
LDLR-205ENST00000557933 ASXL1Q8IXJ9 1541 aa15.74■□□□□ 0.11
LDLR-205ENST00000557933 U2SURPO15042 1029 aaKnown RBP15.73■□□□□ 0.11
LDLR-205ENST00000557933 UGGT1Q9NYU2 1555 aa15.73■□□□□ 0.11
LDLR-205ENST00000557933 MYOM2P54296 1465 aa15.73■□□□□ 0.11
LDLR-205ENST00000557933 FTSJ3Q8IY81 847 aaKnown RBP15.73■□□□□ 0.11
LDLR-205ENST00000557933 PDE3AQ14432 1141 aa15.71■□□□□ 0.11
LDLR-205ENST00000557933 ITPRIPQ8IWB1 547 aa15.71■□□□□ 0.11
LDLR-205ENST00000557933 ANTXR1Q9H6X2 564 aa15.71■□□□□ 0.1
LDLR-205ENST00000557933 MADDQ8WXG6 1647 aa15.71■□□□□ 0.1
LDLR-205ENST00000557933 XRCC6P12956 609 aaKnown RBP eCLIP15.7■□□□□ 0.1
LDLR-205ENST00000557933 MAPK8IP3Q9UPT6 1336 aa15.7■□□□□ 0.1
LDLR-205ENST00000557933 INSRP06213 1382 aa15.7■□□□□ 0.1
LDLR-205ENST00000557933 SCAF11Q99590 1463 aaKnown RBP15.7■□□□□ 0.1
LDLR-205ENST00000557933 NRXN1Q9ULB1 1477 aa15.7■□□□□ 0.1
LDLR-205ENST00000557933 FBLN1P23142 703 aa15.7■□□□□ 0.1
LDLR-205ENST00000557933 PPLO60437 1756 aa15.7■□□□□ 0.1
LDLR-205ENST00000557933 TBC1D32Q96NH3 1257 aa15.69■□□□□ 0.1
LDLR-205ENST00000557933 NAP1L5Q96NT1 182 aaPredicted RBP15.69■□□□□ 0.1
LDLR-205ENST00000557933 ERVK-7P63135 1459 aa15.69■□□□□ 0.1
LDLR-205ENST00000557933 NSD3Q9BZ95 1437 aa15.69■□□□□ 0.1
LDLR-205ENST00000557933 SMC4Q9NTJ3 1288 aa15.68■□□□□ 0.1
LDLR-205ENST00000557933 PIK3C2GO75747 1445 aa15.68■□□□□ 0.1
LDLR-205ENST00000557933 FAM43AQ8N2R8 423 aa15.67■□□□□ 0.1
LDLR-205ENST00000557933 EXOSC9Q06265 439 aaKnown RBP15.67■□□□□ 0.1
LDLR-205ENST00000557933 STK26Q9P289 416 aa15.67■□□□□ 0.1
LDLR-205ENST00000557933 RUNDC1Q96C34 613 aa15.66■□□□□ 0.1
LDLR-205ENST00000557933 C22orf23Q9BZE7 217 aa15.66■□□□□ 0.1
LDLR-205ENST00000557933 LNPKQ9C0E8 428 aa15.66■□□□□ 0.1
LDLR-205ENST00000557933 C1orf115Q9H7X2 142 aa15.66■□□□□ 0.1
LDLR-205ENST00000557933 CABP2Q9NPB3 220 aa15.66■□□□□ 0.1
LDLR-205ENST00000557933 FER1L4A9Z1Z3 1794 aa15.66■□□□□ 0.1
LDLR-205ENST00000557933 TMEM131LA2VDJ0 1609 aa15.65■□□□□ 0.1
LDLR-205ENST00000557933 ELL2O00472 640 aaPredicted RBP15.65■□□□□ 0.1
LDLR-205ENST00000557933 NLRP1Q9C000 1473 aa15.65■□□□□ 0.1
LDLR-205ENST00000557933 GOLGA6L3A6NEY3 463 aa15.65■□□□□ 0.1
LDLR-205ENST00000557933 PMFBP1Q8TBY8 1022 aa15.65■□□□□ 0.1
LDLR-205ENST00000557933 GGNBP2Q9H3C7 697 aa15.65■□□□□ 0.1
LDLR-205ENST00000557933 MCM4P33991 863 aa15.64■□□□□ 0.09
LDLR-205ENST00000557933 GGT6Q6P531 493 aa15.64■□□□□ 0.09
LDLR-205ENST00000557933 RWDD1Q9H446 243 aaPredicted RBP15.64■□□□□ 0.09
LDLR-205ENST00000557933 ZFYVE9O95405 1425 aa15.63■□□□□ 0.09
LDLR-205ENST00000557933 TRIM27P14373 513 aa15.63■□□□□ 0.09
LDLR-205ENST00000557933 RPGRIP1LQ68CZ1 1315 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms