RNA–Protein interactions for RNA: ENST00000557539.1

MTHFD1-216, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 4

Gene MTHFD1, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-216ENST00000557539 APLP1P51693 650 aa8.51□□□□□ -1.05
MTHFD1-216ENST00000557539 MDM2Q00987 491 aaPredicted RBP8.51□□□□□ -1.05
MTHFD1-216ENST00000557539 SKIV2LQ15477 1246 aaKnown RBP8.5□□□□□ -1.05
MTHFD1-216ENST00000557539 FAM161AQ3B820 660 aa8.5□□□□□ -1.05
MTHFD1-216ENST00000557539 PROSER2Q86WR7 435 aaPredicted RBP8.5□□□□□ -1.05
MTHFD1-216ENST00000557539 TMUB1Q9BVT8 246 aa8.5□□□□□ -1.05
MTHFD1-216ENST00000557539 GPCPD1Q9NPB8 672 aa8.5□□□□□ -1.05
MTHFD1-216ENST00000557539 RNF40O75150 1001 aa8.49□□□□□ -1.05
MTHFD1-216ENST00000557539 SSTR3P32745 418 aaPredicted RBP8.49□□□□□ -1.05
MTHFD1-216ENST00000557539 ADGRG1Q9Y653 693 aa8.49□□□□□ -1.05
MTHFD1-216ENST00000557539 KIF13AQ9H1H9 1805 aa8.49□□□□□ -1.05
MTHFD1-216ENST00000557539 HDGFP51858 240 aaKnown RBP8.48□□□□□ -1.05
MTHFD1-216ENST00000557539 PROCA1Q8NCQ7 364 aaPredicted RBP8.48□□□□□ -1.05
MTHFD1-216ENST00000557539 POM121Q96HA1 1249 aa8.48□□□□□ -1.05
MTHFD1-216ENST00000557539 MTRQ99707 1265 aa8.48□□□□□ -1.05
MTHFD1-216ENST00000557539 RAD21O60216 631 aa8.47□□□□□ -1.05
MTHFD1-216ENST00000557539 NECTIN2Q92692 538 aa8.47□□□□□ -1.05
MTHFD1-216ENST00000557539 PHOX2BQ99453 314 aa8.47□□□□□ -1.05
MTHFD1-216ENST00000557539 BEGAINQ9BUH8 593 aa8.47□□□□□ -1.05
MTHFD1-216ENST00000557539 POLR3EQ9NVU0 708 aa8.47□□□□□ -1.05
MTHFD1-216ENST00000557539 SLF2Q8IX21 1173 aa8.46□□□□□ -1.06
MTHFD1-216ENST00000557539 ZNF516Q92618 1163 aa8.46□□□□□ -1.06
MTHFD1-216ENST00000557539 CCDC9Q9Y3X0 531 aaKnown RBP8.46□□□□□ -1.06
MTHFD1-216ENST00000557539 FAM69CQ0P6D2 419 aa8.45□□□□□ -1.06
MTHFD1-216ENST00000557539 CCDC97Q96F63 343 aaPredicted RBP8.45□□□□□ -1.06
MTHFD1-216ENST00000557539 IL21Q9HBE4 155 aa8.45□□□□□ -1.06
MTHFD1-216ENST00000557539 RCCD1A6NED2 376 aa8.44□□□□□ -1.06
MTHFD1-216ENST00000557539 DNAJB2P25686 324 aa8.44□□□□□ -1.06
MTHFD1-216ENST00000557539 FNBP4Q8N3X1 1017 aaPredicted RBP8.44□□□□□ -1.06
MTHFD1-216ENST00000557539 RBM46Q8TBY0 533 aaKnown RBP8.44□□□□□ -1.06
MTHFD1-216ENST00000557539 TMEM134Q9H6X4 195 aa8.44□□□□□ -1.06
MTHFD1-216ENST00000557539 SERPINA10Q9UK55 444 aa8.44□□□□□ -1.06
MTHFD1-216ENST00000557539 NKX2-3Q8TAU0 364 aa8.42□□□□□ -1.06
MTHFD1-216ENST00000557539 NLRP7Q8WX94 980 aa8.42□□□□□ -1.06
MTHFD1-216ENST00000557539 FAM217BQ9NTX9 383 aaPredicted RBP8.42□□□□□ -1.06
MTHFD1-216ENST00000557539 CHD1O14646 1710 aa8.41□□□□□ -1.06
MTHFD1-216ENST00000557539 COPS2P61201 443 aa8.41□□□□□ -1.06
MTHFD1-216ENST00000557539 PXYLP1Q8TE99 480 aa8.41□□□□□ -1.06
MTHFD1-216ENST00000557539 GAPVD1Q14C86 1478 aa8.4□□□□□ -1.06
MTHFD1-216ENST00000557539 MYSM1Q5VVJ2 828 aa8.4□□□□□ -1.06
MTHFD1-216ENST00000557539 IRX2Q9BZI1 471 aaPredicted RBP8.4□□□□□ -1.06
MTHFD1-216ENST00000557539 SPDYE5A6NIY4 337 aa8.39□□□□□ -1.07
MTHFD1-216ENST00000557539 PPP1R18Q6NYC8 613 aa8.39□□□□□ -1.07
MTHFD1-216ENST00000557539 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.39□□□□□ -1.07
MTHFD1-216ENST00000557539 COG6Q9Y2V7 657 aa8.39□□□□□ -1.07
MTHFD1-216ENST00000557539 ZNF608Q9ULD9 1512 aaPredicted RBP8.39□□□□□ -1.07
MTHFD1-216ENST00000557539 OATP04181 439 aa8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 SLC10A3P09131 477 aa8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 CLK2P49760 499 aaKnown RBP8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 METTL3Q86U44 580 aaKnown RBP8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 TRAIPQ9BWF2 469 aa8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 SNRKQ9NRH2 765 aa8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 ATAD2BQ9ULI0 1458 aa8.38□□□□□ -1.07
MTHFD1-216ENST00000557539 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.37□□□□□ -1.07
MTHFD1-216ENST00000557539 RFC5P40937 340 aa8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 SLC4A3P48751 1232 aa8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 BLOC1S3Q6QNY0 202 aa8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 AEBP1Q8IUX7 1158 aa8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 TBC1D2Q9BYX2 928 aa8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 ZNF330Q9Y3S2 320 aaPredicted RBP8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 PCDHB3Q9Y5E6 796 aa8.36□□□□□ -1.07
MTHFD1-216ENST00000557539 HMGXB3Q12766 1538 aa8.35□□□□□ -1.07
MTHFD1-216ENST00000557539 ZPR1O75312 459 aa8.35□□□□□ -1.07
MTHFD1-216ENST00000557539 KCTD17Q8N5Z5 321 aa8.35□□□□□ -1.07
MTHFD1-216ENST00000557539 BANK1Q8NDB2 785 aa8.35□□□□□ -1.07
MTHFD1-216ENST00000557539 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.35□□□□□ -1.07
MTHFD1-216ENST00000557539 CEP164Q9UPV0 1460 aa8.34□□□□□ -1.07
MTHFD1-216ENST00000557539 ACTN4O43707 911 aaKnown RBP8.34□□□□□ -1.07
MTHFD1-216ENST00000557539 CFHP08603 1231 aa8.34□□□□□ -1.07
MTHFD1-216ENST00000557539 PRR14Q9BWN1 585 aa8.33□□□□□ -1.08
MTHFD1-216ENST00000557539 PRKD2Q9BZL6 878 aa8.33□□□□□ -1.08
MTHFD1-216ENST00000557539 TMEM259Q4ZIN3 620 aa8.32□□□□□ -1.08
MTHFD1-216ENST00000557539 FBXO31Q5XUX0 539 aaPredicted RBP8.32□□□□□ -1.08
MTHFD1-216ENST00000557539 RETREG2Q8NC44 543 aa8.32□□□□□ -1.08
MTHFD1-216ENST00000557539 TLL1O43897 1013 aa8.31□□□□□ -1.08
MTHFD1-216ENST00000557539 DIXDC1Q155Q3 683 aa8.31□□□□□ -1.08
MTHFD1-216ENST00000557539 GDPD2Q9HCC8 539 aa8.31□□□□□ -1.08
MTHFD1-216ENST00000557539 LIMD1Q9UGP4 676 aa8.31□□□□□ -1.08
MTHFD1-216ENST00000557539 TOP2BQ02880 1626 aa8.31□□□□□ -1.08
MTHFD1-216ENST00000557539 MED1Q15648 1581 aaPredicted RBP8.31□□□□□ -1.08
MTHFD1-216ENST00000557539 KMT5BQ4FZB7 885 aa8.3□□□□□ -1.08
MTHFD1-216ENST00000557539 CADPSQ9ULU8 1353 aa8.3□□□□□ -1.08
MTHFD1-216ENST00000557539 RIC3Q7Z5B4 369 aa8.29□□□□□ -1.08
MTHFD1-216ENST00000557539 WWC1Q8IX03 1113 aa8.29□□□□□ -1.08
MTHFD1-216ENST00000557539 ABCC10Q5T3U5 1492 aa8.29□□□□□ -1.08
MTHFD1-216ENST00000557539 CLASP1Q7Z460 1538 aa8.29□□□□□ -1.08
MTHFD1-216ENST00000557539 PPP2R2DQ66LE6 453 aa8.28□□□□□ -1.08
MTHFD1-216ENST00000557539 MTMR14Q8NCE2 650 aa8.28□□□□□ -1.08
MTHFD1-216ENST00000557539 EMID1Q96A84 441 aaPredicted RBP8.28□□□□□ -1.08
MTHFD1-216ENST00000557539 ABL2P42684 1182 aa8.27□□□□□ -1.09
MTHFD1-216ENST00000557539 SPIRE2Q8WWL2 714 aa8.27□□□□□ -1.09
MTHFD1-216ENST00000557539 CALR3Q96L12 384 aaKnown RBP8.27□□□□□ -1.09
MTHFD1-216ENST00000557539 V9GY48 417 aaPredicted RBP8.27□□□□□ -1.09
MTHFD1-216ENST00000557539 SMARCA4P51532 1647 aa8.27□□□□□ -1.09
MTHFD1-216ENST00000557539 RNF223E7ERA6 249 aa8.26□□□□□ -1.09
MTHFD1-216ENST00000557539 LCE2BO14633 110 aa8.26□□□□□ -1.09
MTHFD1-216ENST00000557539 HSPA2P54652 639 aa8.26□□□□□ -1.09
MTHFD1-216ENST00000557539 CSPP1Q1MSJ5 1256 aa8.26□□□□□ -1.09
MTHFD1-216ENST00000557539 PUS10Q3MIT2 529 aaKnown RBP8.26□□□□□ -1.09
MTHFD1-216ENST00000557539 PCF11O94913 1555 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms