RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 ARID3CA6NKF2 412 aa9.06□□□□□ -0.96
PRPF39-212ENST00000557477 WNT2BQ93097 391 aa9.06□□□□□ -0.96
PRPF39-212ENST00000557477 RNF166Q96A37 237 aaPredicted RBP9.05□□□□□ -0.96
PRPF39-212ENST00000557477 COG6Q9Y2V7 657 aa9.05□□□□□ -0.96
PRPF39-212ENST00000557477 TRAK2O60296 914 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 USP17L8P0C7I0 530 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 ATP6V1AP38606 617 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 BCAMP50895 628 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 MTMR2Q13614 643 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 PUS10Q3MIT2 529 aaKnown RBP9.04□□□□□ -0.96
PRPF39-212ENST00000557477 KMT5BQ4FZB7 885 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 GRIPAP1Q4V328 841 aa9.04□□□□□ -0.96
PRPF39-212ENST00000557477 PROSER2Q86WR7 435 aaPredicted RBP9.04□□□□□ -0.96
PRPF39-212ENST00000557477 ACTN4O43707 911 aaKnown RBP9.03□□□□□ -0.96
PRPF39-212ENST00000557477 SYMPKQ92797 1274 aaKnown RBP9.03□□□□□ -0.96
PRPF39-212ENST00000557477 SOWAHBA6NEL2 793 aa9.02□□□□□ -0.97
PRPF39-212ENST00000557477 CFAP99D6REC4 459 aa9.02□□□□□ -0.97
PRPF39-212ENST00000557477 C6orf229H3BNL8 230 aa9.02□□□□□ -0.97
PRPF39-212ENST00000557477 RAD21O60216 631 aa9.02□□□□□ -0.97
PRPF39-212ENST00000557477 FNBP4Q8N3X1 1017 aaPredicted RBP9.02□□□□□ -0.97
PRPF39-212ENST00000557477 HPS5Q9UPZ3 1129 aa9.02□□□□□ -0.97
PRPF39-212ENST00000557477 APBB1O00213 710 aa9.01□□□□□ -0.97
PRPF39-212ENST00000557477 PPP4CP60510 307 aa9.01□□□□□ -0.97
PRPF39-212ENST00000557477 MORN1Q5T089 497 aa9.01□□□□□ -0.97
PRPF39-212ENST00000557477 NECTIN2Q92692 538 aa9.01□□□□□ -0.97
PRPF39-212ENST00000557477 KCTD12Q96CX2 325 aaKnown RBP9.01□□□□□ -0.97
PRPF39-212ENST00000557477 ARXQ96QS3 562 aa9.01□□□□□ -0.97
PRPF39-212ENST00000557477 APLP1P51693 650 aa9□□□□□ -0.97
PRPF39-212ENST00000557477 CTDSPL2Q05D32 466 aa9□□□□□ -0.97
PRPF39-212ENST00000557477 GDPD2Q9HCC8 539 aa9□□□□□ -0.97
PRPF39-212ENST00000557477 SLC27A5Q9Y2P5 690 aa9□□□□□ -0.97
PRPF39-212ENST00000557477 TSC1Q92574 1164 aa8.99□□□□□ -0.97
PRPF39-212ENST00000557477 HMX1Q9NP08 348 aaPredicted RBP8.99□□□□□ -0.97
PRPF39-212ENST00000557477 TSR3Q9UJK0 312 aaKnown RBP8.99□□□□□ -0.97
PRPF39-212ENST00000557477 SOCS7O14512 581 aa8.98□□□□□ -0.97
PRPF39-212ENST00000557477 ARID3AQ99856 593 aa8.98□□□□□ -0.97
PRPF39-212ENST00000557477 TBC1D2BQ9UPU7 963 aa8.98□□□□□ -0.97
PRPF39-212ENST00000557477 THSD4Q6ZMP0 1018 aa8.97□□□□□ -0.97
PRPF39-212ENST00000557477 HELBQ8NG08 1087 aaPredicted RBP8.97□□□□□ -0.97
PRPF39-212ENST00000557477 LRRN4Q8WUT4 740 aa8.97□□□□□ -0.97
PRPF39-212ENST00000557477 GJD4Q96KN9 370 aaPredicted RBP8.97□□□□□ -0.97
PRPF39-212ENST00000557477 PRR14Q9BWN1 585 aa8.97□□□□□ -0.97
PRPF39-212ENST00000557477 ZNF777Q9ULD5 760 aaPredicted RBP8.97□□□□□ -0.97
PRPF39-212ENST00000557477 BLOC1S3Q6QNY0 202 aa8.96□□□□□ -0.98
PRPF39-212ENST00000557477 RNF19BQ6ZMZ0 732 aa8.96□□□□□ -0.98
PRPF39-212ENST00000557477 PRR7Q8TB68 274 aa8.96□□□□□ -0.98
PRPF39-212ENST00000557477 WBP1LQ9NX94 342 aa8.96□□□□□ -0.98
PRPF39-212ENST00000557477 ABL2P42684 1182 aa8.95□□□□□ -0.98
PRPF39-212ENST00000557477 RETREG3Q86VR2 466 aa8.95□□□□□ -0.98
PRPF39-212ENST00000557477 PTPN5P54829 565 aa8.94□□□□□ -0.98
PRPF39-212ENST00000557477 Q3C1V9 767 aa8.94□□□□□ -0.98
PRPF39-212ENST00000557477 TRIM34Q9BYJ4 488 aa8.94□□□□□ -0.98
PRPF39-212ENST00000557477 PCDHB3Q9Y5E6 796 aa8.94□□□□□ -0.98
PRPF39-212ENST00000557477 PER1O15534 1290 aaPredicted RBP8.93□□□□□ -0.98
PRPF39-212ENST00000557477 GPR37L1O60883 481 aa8.93□□□□□ -0.98
PRPF39-212ENST00000557477 HOMEZQ8IX15 550 aa8.93□□□□□ -0.98
PRPF39-212ENST00000557477 CCDC82Q8N4S0 544 aa8.93□□□□□ -0.98
PRPF39-212ENST00000557477 SCUBE3Q8IX30 993 aa8.92□□□□□ -0.98
PRPF39-212ENST00000557477 EPS8L1Q8TE68 723 aa8.92□□□□□ -0.98
PRPF39-212ENST00000557477 ZNF330Q9Y3S2 320 aaPredicted RBP8.92□□□□□ -0.98
PRPF39-212ENST00000557477 NDUFB9Q9Y6M9 179 aa8.92□□□□□ -0.98
PRPF39-212ENST00000557477 BRICD5Q6PL45 260 aa8.91□□□□□ -0.98
PRPF39-212ENST00000557477 THAP11Q96EK4 314 aa8.91□□□□□ -0.98
PRPF39-212ENST00000557477 PRM3Q9NNZ6 103 aa8.91□□□□□ -0.98
PRPF39-212ENST00000557477 IRF5Q13568 498 aa8.9□□□□□ -0.98
PRPF39-212ENST00000557477 POM121CA8CG34 1229 aa8.89□□□□□ -0.99
PRPF39-212ENST00000557477 NR1I2O75469 434 aa8.89□□□□□ -0.99
PRPF39-212ENST00000557477 USB1Q9BQ65 265 aaKnown RBP8.89□□□□□ -0.99
PRPF39-212ENST00000557477 SALL2Q9Y467 1007 aaPredicted RBP8.89□□□□□ -0.99
PRPF39-212ENST00000557477 NR6A1Q15406 480 aa8.88□□□□□ -0.99
PRPF39-212ENST00000557477 DESI1Q6ICB0 168 aa8.88□□□□□ -0.99
PRPF39-212ENST00000557477 FMNL1O95466 1100 aaPredicted RBP8.87□□□□□ -0.99
PRPF39-212ENST00000557477 COPS2P61201 443 aa8.87□□□□□ -0.99
PRPF39-212ENST00000557477 NYAP1Q6ZVC0 841 aa8.87□□□□□ -0.99
PRPF39-212ENST00000557477 WWC1Q8IX03 1113 aa8.87□□□□□ -0.99
PRPF39-212ENST00000557477 LYPD8Q6UX82 237 aa8.86□□□□□ -0.99
PRPF39-212ENST00000557477 TLL1O43897 1013 aa8.84□□□□□ -0.99
PRPF39-212ENST00000557477 JUNDP17535 347 aa8.84□□□□□ -0.99
PRPF39-212ENST00000557477 GLMNQ92990 594 aa8.83□□□□□ -1
PRPF39-212ENST00000557477 CCDC97Q96F63 343 aaPredicted RBP8.83□□□□□ -1
PRPF39-212ENST00000557477 PRDM9Q9NQV7 894 aa8.83□□□□□ -1
PRPF39-212ENST00000557477 HCSTQ9UBK5 93 aa8.83□□□□□ -1
PRPF39-212ENST00000557477 VAC14Q08AM6 782 aa8.82□□□□□ -1
PRPF39-212ENST00000557477 FAM160A2Q8N612 972 aaPredicted RBP8.82□□□□□ -1
PRPF39-212ENST00000557477 SPSB2Q99619 263 aa8.82□□□□□ -1
PRPF39-212ENST00000557477 MTRQ99707 1265 aa8.82□□□□□ -1
PRPF39-212ENST00000557477 MAP10Q9P2G4 905 aa8.82□□□□□ -1
PRPF39-212ENST00000557477 F12P00748 615 aaPredicted RBP8.81□□□□□ -1
PRPF39-212ENST00000557477 MSS51Q4VC12 460 aa8.81□□□□□ -1
PRPF39-212ENST00000557477 ADAMTS19Q8TE59 1207 aa8.81□□□□□ -1
PRPF39-212ENST00000557477 CALR3Q96L12 384 aaKnown RBP8.81□□□□□ -1
PRPF39-212ENST00000557477 SERPINA10Q9UK55 444 aa8.81□□□□□ -1
PRPF39-212ENST00000557477 DXOO77932 396 aaKnown RBP8.8□□□□□ -1
PRPF39-212ENST00000557477 PTPRNQ16849 979 aa8.8□□□□□ -1
PRPF39-212ENST00000557477 WASHC4Q2M389 1173 aa8.8□□□□□ -1
PRPF39-212ENST00000557477 ZPR1O75312 459 aa8.79□□□□□ -1
PRPF39-212ENST00000557477 ZNF516Q92618 1163 aa8.78□□□□□ -1
PRPF39-212ENST00000557477 IL21Q9HBE4 155 aa8.78□□□□□ -1
PRPF39-212ENST00000557477 ADH1BP00325 375 aa8.77□□□□□ -1.01
PRPF39-212ENST00000557477 CCNYL3P0C7X3 344 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms