RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 IFT172Q9UG01 1749 aa14.07□□□□□ -0.16
SRP54-210ENST00000556380 PIK3C2GO75747 1445 aa14.07□□□□□ -0.16
SRP54-210ENST00000556380 NKTRP30414 1462 aaKnown RBP14.06□□□□□ -0.16
SRP54-210ENST00000556380 ALKQ9UM73 1620 aa14.06□□□□□ -0.16
SRP54-210ENST00000556380 STAC3Q96MF2 364 aa14.06□□□□□ -0.16
SRP54-210ENST00000556380 SIN3AQ96ST3 1273 aa14.06□□□□□ -0.16
SRP54-210ENST00000556380 C14orf93Q9H972 538 aaKnown RBP14.06□□□□□ -0.16
SRP54-210ENST00000556380 MYOM2P54296 1465 aa14.06□□□□□ -0.16
SRP54-210ENST00000556380 C19orf67A6NJJ6 358 aa14.05□□□□□ -0.16
SRP54-210ENST00000556380 DCAF11Q8TEB1 546 aa14.05□□□□□ -0.16
SRP54-210ENST00000556380 RBM33Q96EV2 1170 aaKnown RBP14.05□□□□□ -0.16
SRP54-210ENST00000556380 UBAP1LF5GYI3 381 aa14.03□□□□□ -0.16
SRP54-210ENST00000556380 SETD1AO15047 1707 aaKnown RBP14.03□□□□□ -0.16
SRP54-210ENST00000556380 PRAG1Q86YV5 1406 aa14.02□□□□□ -0.16
SRP54-210ENST00000556380 NCOA3Q9Y6Q9 1424 aa14.02□□□□□ -0.16
SRP54-210ENST00000556380 CFAP70Q5T0N1 1121 aa14.02□□□□□ -0.17
SRP54-210ENST00000556380 KDM2AQ9Y2K7 1162 aa14.02□□□□□ -0.17
SRP54-210ENST00000556380 XRN1Q8IZH2 1706 aaKnown RBP14.01□□□□□ -0.17
SRP54-210ENST00000556380 TMEM132EQ6IEE7 984 aa14.01□□□□□ -0.17
SRP54-210ENST00000556380 XIRP1Q702N8 1843 aaKnown RBP14.01□□□□□ -0.17
SRP54-210ENST00000556380 TOM1O60784 492 aa14□□□□□ -0.17
SRP54-210ENST00000556380 L3MBTL2Q969R5 705 aa14□□□□□ -0.17
SRP54-210ENST00000556380 ASXL1Q8IXJ9 1541 aa14□□□□□ -0.17
SRP54-210ENST00000556380 LRPPRCP42704 1394 aaKnown RBP13.99□□□□□ -0.17
SRP54-210ENST00000556380 ABCC11Q96J66 1382 aa13.99□□□□□ -0.17
SRP54-210ENST00000556380 ROBO2Q9HCK4 1378 aa13.99□□□□□ -0.17
SRP54-210ENST00000556380 NEUROD1Q13562 356 aa13.99□□□□□ -0.17
SRP54-210ENST00000556380 C19orf44Q9H6X5 657 aa13.98□□□□□ -0.17
SRP54-210ENST00000556380 TECPR2O15040 1411 aa13.98□□□□□ -0.17
SRP54-210ENST00000556380 PTCH1Q13635 1447 aa13.98□□□□□ -0.17
SRP54-210ENST00000556380 SIRT1Q96EB6 747 aa13.97□□□□□ -0.17
SRP54-210ENST00000556380 FARP1Q9Y4F1 1045 aaPredicted RBP13.97□□□□□ -0.17
SRP54-210ENST00000556380 STK26Q9P289 416 aa13.96□□□□□ -0.17
SRP54-210ENST00000556380 YTHDC2Q9H6S0 1430 aaKnown RBP13.96□□□□□ -0.18
SRP54-210ENST00000556380 MSH6P52701 1360 aa13.96□□□□□ -0.18
SRP54-210ENST00000556380 ADGRB1O14514 1584 aa13.95□□□□□ -0.18
SRP54-210ENST00000556380 PIP4K2BP78356 416 aa13.94□□□□□ -0.18
SRP54-210ENST00000556380 WAPLQ7Z5K2 1190 aa13.93□□□□□ -0.18
SRP54-210ENST00000556380 SLAIN2Q9P270 581 aa13.93□□□□□ -0.18
SRP54-210ENST00000556380 FAM135BQ49AJ0 1406 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 ADGRL3Q9HAR2 1447 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 NBPF1Q3BBV0 1214 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 C14orf37Q86TY3 774 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 CADPS2Q86UW7 1296 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 CREBZFQ9NS37 354 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 PLEKHH1Q9ULM0 1364 aa13.92□□□□□ -0.18
SRP54-210ENST00000556380 CLSPNQ9HAW4 1339 aa13.91□□□□□ -0.18
SRP54-210ENST00000556380 DCCP43146 1447 aa13.91□□□□□ -0.18
SRP54-210ENST00000556380 LAMC1P11047 1609 aa13.91□□□□□ -0.18
SRP54-210ENST00000556380 ATF3P18847 181 aa13.9□□□□□ -0.18
SRP54-210ENST00000556380 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.9□□□□□ -0.18
SRP54-210ENST00000556380 HSPA1LP34931 641 aa13.89□□□□□ -0.19
SRP54-210ENST00000556380 NBPF8Q3BBV2 869 aa13.89□□□□□ -0.19
SRP54-210ENST00000556380 PRAM1Q96QH2 718 aa13.88□□□□□ -0.19
SRP54-210ENST00000556380 TRAK1Q9UPV9 953 aa13.88□□□□□ -0.19
SRP54-210ENST00000556380 DLC1Q96QB1 1528 aa13.88□□□□□ -0.19
SRP54-210ENST00000556380 KNDC1Q76NI1 1749 aa13.87□□□□□ -0.19
SRP54-210ENST00000556380 MST1RQ04912 1400 aa13.87□□□□□ -0.19
SRP54-210ENST00000556380 KIAA1210Q9ULL0 1709 aa13.86□□□□□ -0.19
SRP54-210ENST00000556380 TONSLQ96HA7 1378 aa13.85□□□□□ -0.19
SRP54-210ENST00000556380 NALCNQ8IZF0 1738 aa13.85□□□□□ -0.19
SRP54-210ENST00000556380 CD44P16070 742 aaKnown RBP13.85□□□□□ -0.19
SRP54-210ENST00000556380 PROM2Q8N271 834 aa13.85□□□□□ -0.19
SRP54-210ENST00000556380 BRINP3Q76B58 766 aa13.84□□□□□ -0.19
SRP54-210ENST00000556380 POGKQ9P215 609 aa13.84□□□□□ -0.19
SRP54-210ENST00000556380 TIMELESSQ9UNS1 1208 aa13.84□□□□□ -0.19
SRP54-210ENST00000556380 C1orf167Q5SNV9 1468 aa13.83□□□□□ -0.2
SRP54-210ENST00000556380 SAFB2Q14151 953 aaKnown RBP eCLIP13.83□□□□□ -0.2
SRP54-210ENST00000556380 CCER1Q8TC90 406 aaPredicted RBP13.83□□□□□ -0.2
SRP54-210ENST00000556380 GABBR2O75899 941 aa13.82□□□□□ -0.2
SRP54-210ENST00000556380 GPRASP1Q5JY77 1395 aa13.82□□□□□ -0.2
SRP54-210ENST00000556380 CDC42BPGQ6DT37 1551 aa13.81□□□□□ -0.2
SRP54-210ENST00000556380 ROBO1Q9Y6N7 1651 aa13.81□□□□□ -0.2
SRP54-210ENST00000556380 TRPM1Q7Z4N2 1603 aa13.8□□□□□ -0.2
SRP54-210ENST00000556380 ORAI2Q96SN7 254 aa13.8□□□□□ -0.2
SRP54-210ENST00000556380 ROCK2O75116 1388 aaKnown RBP13.79□□□□□ -0.2
SRP54-210ENST00000556380 HIRIP3Q9BW71 556 aaPredicted RBP13.78□□□□□ -0.2
SRP54-210ENST00000556380 MINK1Q8N4C8 1332 aaPredicted RBP13.78□□□□□ -0.2
SRP54-210ENST00000556380 NUTM2FA1L443 756 aa13.77□□□□□ -0.21
SRP54-210ENST00000556380 WASLO00401 505 aaPredicted RBP13.77□□□□□ -0.21
SRP54-210ENST00000556380 RALGAPBQ86X10 1494 aa13.77□□□□□ -0.21
SRP54-210ENST00000556380 ARHGEF28Q8N1W1 1705 aaKnown RBP13.76□□□□□ -0.21
SRP54-210ENST00000556380 AHDC1Q5TGY3 1603 aaPredicted RBP13.76□□□□□ -0.21
SRP54-210ENST00000556380 ADGRB2O60241 1585 aa13.76□□□□□ -0.21
SRP54-210ENST00000556380 CENPJQ9HC77 1338 aaPredicted RBP13.76□□□□□ -0.21
SRP54-210ENST00000556380 ESCO1Q5FWF5 840 aa13.76□□□□□ -0.21
SRP54-210ENST00000556380 DDX17Q92841 729 aaKnown RBP13.76□□□□□ -0.21
SRP54-210ENST00000556380 CARD11Q9BXL7 1154 aa13.75□□□□□ -0.21
SRP54-210ENST00000556380 PRR36Q9H6K5 1346 aa13.74□□□□□ -0.21
SRP54-210ENST00000556380 FMN2Q9NZ56 1722 aa13.74□□□□□ -0.21
SRP54-210ENST00000556380 CDK19Q9BWU1 502 aa13.74□□□□□ -0.21
SRP54-210ENST00000556380 ANKARQ7Z5J8 1434 aa13.73□□□□□ -0.21
SRP54-210ENST00000556380 SOS2Q07890 1332 aaPredicted RBP13.73□□□□□ -0.21
SRP54-210ENST00000556380 COL16A1Q07092 1604 aaPredicted RBP13.72□□□□□ -0.21
SRP54-210ENST00000556380 FOXO3O43524 673 aa13.71□□□□□ -0.21
SRP54-210ENST00000556380 PHF8Q9UPP1 1060 aa13.71□□□□□ -0.21
SRP54-210ENST00000556380 NHSL1Q5SYE7 1610 aa13.71□□□□□ -0.22
SRP54-210ENST00000556380 NUDT16Q96DE0 195 aaKnown RBP13.7□□□□□ -0.22
SRP54-210ENST00000556380 USP32Q8NFA0 1604 aa13.7□□□□□ -0.22
SRP54-210ENST00000556380 PHLPP1O60346 1717 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms