RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 TLL1O43897 1013 aa7.81□□□□□ -1.16
VTI1B-202ENST00000553619 RBM26Q5T8P6 1007 aaKnown RBP7.81□□□□□ -1.16
VTI1B-202ENST00000553619 SMYD5Q6GMV2 418 aa7.81□□□□□ -1.16
VTI1B-202ENST00000553619 NUP160Q12769 1436 aa7.8□□□□□ -1.16
VTI1B-202ENST00000553619 LCE2BO14633 110 aa7.8□□□□□ -1.16
VTI1B-202ENST00000553619 GFRA3O60609 400 aa7.8□□□□□ -1.16
VTI1B-202ENST00000553619 CFHP08603 1231 aa7.8□□□□□ -1.16
VTI1B-202ENST00000553619 V9GY48 417 aaPredicted RBP7.8□□□□□ -1.16
VTI1B-202ENST00000553619 IQGAP2Q13576 1575 aa7.8□□□□□ -1.16
VTI1B-202ENST00000553619 CHD1O14646 1710 aa7.79□□□□□ -1.16
VTI1B-202ENST00000553619 LAPTM4AQ15012 233 aa7.79□□□□□ -1.16
VTI1B-202ENST00000553619 PXYLP1Q8TE99 480 aa7.79□□□□□ -1.16
VTI1B-202ENST00000553619 CARMIL2Q6F5E8 1435 aa7.78□□□□□ -1.16
VTI1B-202ENST00000553619 EFCAB5A4FU69 1503 aa7.78□□□□□ -1.16
VTI1B-202ENST00000553619 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.78□□□□□ -1.16
VTI1B-202ENST00000553619 ACTN4O43707 911 aaKnown RBP7.78□□□□□ -1.16
VTI1B-202ENST00000553619 SLC10A3P09131 477 aa7.78□□□□□ -1.16
VTI1B-202ENST00000553619 GGCXP38435 758 aa7.78□□□□□ -1.16
VTI1B-202ENST00000553619 TULP1O00294 542 aaPredicted RBP7.77□□□□□ -1.17
VTI1B-202ENST00000553619 GPR37O15354 613 aa7.77□□□□□ -1.17
VTI1B-202ENST00000553619 FECHP22830 423 aa7.77□□□□□ -1.17
VTI1B-202ENST00000553619 HIC1Q14526 733 aa7.77□□□□□ -1.17
VTI1B-202ENST00000553619 KMT5BQ4FZB7 885 aa7.77□□□□□ -1.17
VTI1B-202ENST00000553619 CEP170Q5SW79 1584 aa7.76□□□□□ -1.17
VTI1B-202ENST00000553619 NRG2O14511 850 aaPredicted RBP7.76□□□□□ -1.17
VTI1B-202ENST00000553619 METTL3Q86U44 580 aaKnown RBP7.76□□□□□ -1.17
VTI1B-202ENST00000553619 TMUB1Q9BVT8 246 aa7.76□□□□□ -1.17
VTI1B-202ENST00000553619 UGGT2Q9NYU1 1516 aa7.76□□□□□ -1.17
VTI1B-202ENST00000553619 FMN1Q68DA7 1419 aa7.76□□□□□ -1.17
VTI1B-202ENST00000553619 ARHGAP35Q9NRY4 1499 aa7.75□□□□□ -1.17
VTI1B-202ENST00000553619 RNF223E7ERA6 249 aa7.75□□□□□ -1.17
VTI1B-202ENST00000553619 OATP04181 439 aa7.75□□□□□ -1.17
VTI1B-202ENST00000553619 EMID1Q96A84 441 aaPredicted RBP7.75□□□□□ -1.17
VTI1B-202ENST00000553619 VPS8Q8N3P4 1428 aa7.75□□□□□ -1.17
VTI1B-202ENST00000553619 GNPATO15228 680 aa7.73□□□□□ -1.17
VTI1B-202ENST00000553619 S1PR4O95977 384 aa7.73□□□□□ -1.17
VTI1B-202ENST00000553619 VSIG10Q8N0Z9 540 aa7.73□□□□□ -1.17
VTI1B-202ENST00000553619 ATP1B4Q9UN42 357 aaPredicted RBP7.73□□□□□ -1.17
VTI1B-202ENST00000553619 PDZRN3Q9UPQ7 1066 aa7.73□□□□□ -1.17
VTI1B-202ENST00000553619 SAMD9Q5K651 1589 aa7.72□□□□□ -1.17
VTI1B-202ENST00000553619 PRG4Q92954 1404 aaPredicted RBP7.72□□□□□ -1.17
VTI1B-202ENST00000553619 PPEF1O14829 653 aaPredicted RBP7.72□□□□□ -1.17
VTI1B-202ENST00000553619 TRAF7Q6Q0C0 670 aa7.72□□□□□ -1.17
VTI1B-202ENST00000553619 NLRP7Q8WX94 980 aa7.72□□□□□ -1.17
VTI1B-202ENST00000553619 ARAP1Q96P48 1450 aa7.71□□□□□ -1.18
VTI1B-202ENST00000553619 ADH1BP00325 375 aa7.71□□□□□ -1.18
VTI1B-202ENST00000553619 PUS10Q3MIT2 529 aaKnown RBP7.71□□□□□ -1.18
VTI1B-202ENST00000553619 FHOD3Q2V2M9 1422 aa7.7□□□□□ -1.18
VTI1B-202ENST00000553619 NR1I2O75469 434 aa7.7□□□□□ -1.18
VTI1B-202ENST00000553619 SLC19A1P41440 591 aa7.7□□□□□ -1.18
VTI1B-202ENST00000553619 KIAA0556O60303 1618 aa7.7□□□□□ -1.18
VTI1B-202ENST00000553619 PTPRGP23470 1445 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 CLASP1Q7Z460 1538 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 DISP1Q96F81 1524 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 TRIM67Q6ZTA4 783 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 ANKLE1Q8NAG6 615 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 CDK11AQ9UQ88 783 aaPredicted RBP7.69□□□□□ -1.18
VTI1B-202ENST00000553619 KDM2AQ9Y2K7 1162 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 SHROOM2Q13796 1616 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 TTBK1Q5TCY1 1321 aaPredicted RBP7.69□□□□□ -1.18
VTI1B-202ENST00000553619 CASKIN1Q8WXD9 1431 aa7.69□□□□□ -1.18
VTI1B-202ENST00000553619 SCUBE3Q8IX30 993 aa7.68□□□□□ -1.18
VTI1B-202ENST00000553619 RDH13Q8NBN7 331 aa7.68□□□□□ -1.18
VTI1B-202ENST00000553619 PHOX2BQ99453 314 aa7.68□□□□□ -1.18
VTI1B-202ENST00000553619 SPRYD7Q5W111 196 aa7.67□□□□□ -1.18
VTI1B-202ENST00000553619 LIAT1Q6ZQX7 453 aa7.67□□□□□ -1.18
VTI1B-202ENST00000553619 GPIHBP1Q8IV16 184 aa7.67□□□□□ -1.18
VTI1B-202ENST00000553619 DAXXQ9UER7 740 aaPredicted RBP7.67□□□□□ -1.18
VTI1B-202ENST00000553619 MAP3K1Q13233 1512 aa7.67□□□□□ -1.18
VTI1B-202ENST00000553619 DDX11L8A8MPP1 907 aa7.66□□□□□ -1.18
VTI1B-202ENST00000553619 PLA2G2CQ5R387 149 aa7.66□□□□□ -1.18
VTI1B-202ENST00000553619 RSPH4AQ5TD94 716 aa7.66□□□□□ -1.18
VTI1B-202ENST00000553619 SLC6A16Q9GZN6 736 aa7.66□□□□□ -1.18
VTI1B-202ENST00000553619 FYCO1Q9BQS8 1478 aa7.66□□□□□ -1.18
VTI1B-202ENST00000553619 FUT2Q10981 343 aa7.65□□□□□ -1.18
VTI1B-202ENST00000553619 HECW1Q76N89 1606 aa7.64□□□□□ -1.19
VTI1B-202ENST00000553619 CCDC18Q5T9S5 1454 aa7.64□□□□□ -1.19
VTI1B-202ENST00000553619 PLEKHD1A6NEE1 506 aa7.64□□□□□ -1.19
VTI1B-202ENST00000553619 TRIM26Q12899 539 aaPredicted RBP7.64□□□□□ -1.19
VTI1B-202ENST00000553619 MORN1Q5T089 497 aa7.64□□□□□ -1.19
VTI1B-202ENST00000553619 ZNF598Q86UK7 904 aaKnown RBP7.64□□□□□ -1.19
VTI1B-202ENST00000553619 SPSB2Q99619 263 aa7.64□□□□□ -1.19
VTI1B-202ENST00000553619 RAPGEF6Q8TEU7 1601 aa7.63□□□□□ -1.19
VTI1B-202ENST00000553619 UACAQ9BZF9 1416 aa7.63□□□□□ -1.19
VTI1B-202ENST00000553619 ZNF697Q5TEC3 545 aa7.63□□□□□ -1.19
VTI1B-202ENST00000553619 THAP11Q96EK4 314 aa7.62□□□□□ -1.19
VTI1B-202ENST00000553619 MTUS2Q5JR59 1369 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 GCGRP47871 477 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PRR20EP86478 221 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PRR20CP86479 221 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PRR20DP86480 221 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PRR20BP86481 221 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PRR20AP86496 221 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PPARGC1BQ86YN6 1023 aaKnown RBP7.61□□□□□ -1.19
VTI1B-202ENST00000553619 SULF1Q8IWU6 871 aa7.61□□□□□ -1.19
VTI1B-202ENST00000553619 PCF11O94913 1555 aaKnown RBP7.61□□□□□ -1.19
VTI1B-202ENST00000553619 ABCA8O94911 1581 aa7.6□□□□□ -1.19
VTI1B-202ENST00000553619 TIAM1Q13009 1591 aa7.6□□□□□ -1.19
VTI1B-202ENST00000553619 TNFRSF10AO00220 468 aa7.6□□□□□ -1.19
VTI1B-202ENST00000553619 GDF9O60383 454 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms