RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ABCC11Q96J66 1382 aa10.6□□□□□ -0.71
LIMA1-216ENST00000552909 PLEKHH1Q9ULM0 1364 aa10.6□□□□□ -0.71
LIMA1-216ENST00000552909 ATF3P18847 181 aa10.6□□□□□ -0.71
LIMA1-216ENST00000552909 CADPS2Q86UW7 1296 aa10.59□□□□□ -0.71
LIMA1-216ENST00000552909 STAC3Q96MF2 364 aa10.59□□□□□ -0.71
LIMA1-216ENST00000552909 PRAG1Q86YV5 1406 aa10.59□□□□□ -0.71
LIMA1-216ENST00000552909 NALCNQ8IZF0 1738 aa10.59□□□□□ -0.71
LIMA1-216ENST00000552909 TECPR2O15040 1411 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 ADGRL3Q9HAR2 1447 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 ADGRB1O14514 1584 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 NBPF1Q3BBV0 1214 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 TRAK1Q9UPV9 953 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 FAM135BQ49AJ0 1406 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 ROBO1Q9Y6N7 1651 aa10.58□□□□□ -0.72
LIMA1-216ENST00000552909 SAFB2Q14151 953 aaKnown RBP eCLIP10.58□□□□□ -0.72
LIMA1-216ENST00000552909 FANCIQ9NVI1 1328 aa10.57□□□□□ -0.72
LIMA1-216ENST00000552909 LAMC1P11047 1609 aa10.57□□□□□ -0.72
LIMA1-216ENST00000552909 PRAM1Q96QH2 718 aa10.56□□□□□ -0.72
LIMA1-216ENST00000552909 KNDC1Q76NI1 1749 aa10.55□□□□□ -0.72
LIMA1-216ENST00000552909 DCCP43146 1447 aa10.55□□□□□ -0.72
LIMA1-216ENST00000552909 MST1RQ04912 1400 aa10.55□□□□□ -0.72
LIMA1-216ENST00000552909 NUTM2FA1L443 756 aa10.55□□□□□ -0.72
LIMA1-216ENST00000552909 BRINP3Q76B58 766 aa10.55□□□□□ -0.72
LIMA1-216ENST00000552909 TIMELESSQ9UNS1 1208 aa10.55□□□□□ -0.72
LIMA1-216ENST00000552909 NBPF8Q3BBV2 869 aa10.54□□□□□ -0.72
LIMA1-216ENST00000552909 DDX17Q92841 729 aaKnown RBP10.54□□□□□ -0.72
LIMA1-216ENST00000552909 SIRT1Q96EB6 747 aa10.54□□□□□ -0.72
LIMA1-216ENST00000552909 ORAI2Q96SN7 254 aa10.54□□□□□ -0.72
LIMA1-216ENST00000552909 POGKQ9P215 609 aa10.53□□□□□ -0.72
LIMA1-216ENST00000552909 HIRIP3Q9BW71 556 aaPredicted RBP10.53□□□□□ -0.72
LIMA1-216ENST00000552909 C1orf167Q5SNV9 1468 aa10.52□□□□□ -0.72
LIMA1-216ENST00000552909 TONSLQ96HA7 1378 aa10.52□□□□□ -0.73
LIMA1-216ENST00000552909 DLC1Q96QB1 1528 aa10.51□□□□□ -0.73
LIMA1-216ENST00000552909 MINK1Q8N4C8 1332 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-216ENST00000552909 KIAA1210Q9ULL0 1709 aa10.51□□□□□ -0.73
LIMA1-216ENST00000552909 DEKP35659 375 aaKnown RBP10.5□□□□□ -0.73
LIMA1-216ENST00000552909 ESCO1Q5FWF5 840 aa10.5□□□□□ -0.73
LIMA1-216ENST00000552909 PHLPP1O60346 1717 aa10.5□□□□□ -0.73
LIMA1-216ENST00000552909 CDC42BPGQ6DT37 1551 aa10.5□□□□□ -0.73
LIMA1-216ENST00000552909 ARHGEF28Q8N1W1 1705 aaKnown RBP10.49□□□□□ -0.73
LIMA1-216ENST00000552909 TRPM1Q7Z4N2 1603 aa10.49□□□□□ -0.73
LIMA1-216ENST00000552909 RGPD8O14715 1765 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-216ENST00000552909 COL16A1Q07092 1604 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-216ENST00000552909 ROCK2O75116 1388 aaKnown RBP10.47□□□□□ -0.73
LIMA1-216ENST00000552909 AHDC1Q5TGY3 1603 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-216ENST00000552909 FOXO3O43524 673 aa10.47□□□□□ -0.73
LIMA1-216ENST00000552909 FMN2Q9NZ56 1722 aa10.47□□□□□ -0.73
LIMA1-216ENST00000552909 XPCQ01831 940 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-216ENST00000552909 NHSL1Q5SYE7 1610 aa10.46□□□□□ -0.74
LIMA1-216ENST00000552909 PRR36Q9H6K5 1346 aa10.46□□□□□ -0.74
LIMA1-216ENST00000552909 WASLO00401 505 aaPredicted RBP10.46□□□□□ -0.74
LIMA1-216ENST00000552909 DISP3Q9P2K9 1392 aa10.45□□□□□ -0.74
LIMA1-216ENST00000552909 PMFBP1Q8TBY8 1022 aa10.45□□□□□ -0.74
LIMA1-216ENST00000552909 USP32Q8NFA0 1604 aa10.45□□□□□ -0.74
LIMA1-216ENST00000552909 ADGRB2O60241 1585 aa10.44□□□□□ -0.74
LIMA1-216ENST00000552909 SOS2Q07890 1332 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-216ENST00000552909 CENPJQ9HC77 1338 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-216ENST00000552909 CDK19Q9BWU1 502 aa10.44□□□□□ -0.74
LIMA1-216ENST00000552909 CARD11Q9BXL7 1154 aa10.44□□□□□ -0.74
LIMA1-216ENST00000552909 GPRASP1Q5JY77 1395 aa10.44□□□□□ -0.74
LIMA1-216ENST00000552909 JCADQ9P266 1359 aa10.44□□□□□ -0.74
LIMA1-216ENST00000552909 MED1Q15648 1581 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-216ENST00000552909 ANO8Q9HCE9 1232 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-216ENST00000552909 LRRC59Q96AG4 307 aaKnown RBP10.43□□□□□ -0.74
LIMA1-216ENST00000552909 PHF8Q9UPP1 1060 aa10.43□□□□□ -0.74
LIMA1-216ENST00000552909 ERICH6BQ5W0A0 696 aa10.42□□□□□ -0.74
LIMA1-216ENST00000552909 NPHP3Q7Z494 1330 aa10.42□□□□□ -0.74
LIMA1-216ENST00000552909 RALGAPBQ86X10 1494 aa10.42□□□□□ -0.74
LIMA1-216ENST00000552909 NUDT16Q96DE0 195 aaKnown RBP10.42□□□□□ -0.74
LIMA1-216ENST00000552909 PXDNQ92626 1479 aa10.41□□□□□ -0.74
LIMA1-216ENST00000552909 CABP2Q9NPB3 220 aa10.41□□□□□ -0.74
LIMA1-216ENST00000552909 QRICH2Q9H0J4 1663 aa10.41□□□□□ -0.74
LIMA1-216ENST00000552909 TULP4Q9NRJ4 1543 aa10.41□□□□□ -0.74
LIMA1-216ENST00000552909 ANKARQ7Z5J8 1434 aa10.41□□□□□ -0.74
LIMA1-216ENST00000552909 NUTM2BA6NNL0 878 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-216ENST00000552909 NUTM2EB1AL46 878 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-216ENST00000552909 KRT28Q7Z3Y7 464 aa10.41□□□□□ -0.74
LIMA1-216ENST00000552909 NUTM2AQ8IVF1 878 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-216ENST00000552909 LRP6O75581 1613 aa10.4□□□□□ -0.74
LIMA1-216ENST00000552909 CCER2I3L3R5 266 aa10.4□□□□□ -0.74
LIMA1-216ENST00000552909 PNPLA6Q8IY17 1366 aa10.4□□□□□ -0.74
LIMA1-216ENST00000552909 ATP7BP35670 1465 aa10.4□□□□□ -0.74
LIMA1-216ENST00000552909 SRPK2P78362 688 aaKnown RBP10.39□□□□□ -0.75
LIMA1-216ENST00000552909 RGS17Q9UGC6 210 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-216ENST00000552909 SHPRHQ149N8 1683 aa10.39□□□□□ -0.75
LIMA1-216ENST00000552909 PSME1Q06323 249 aa10.39□□□□□ -0.75
LIMA1-216ENST00000552909 DDX10Q13206 875 aaKnown RBP10.39□□□□□ -0.75
LIMA1-216ENST00000552909 ILDR2Q71H61 639 aa10.39□□□□□ -0.75
LIMA1-216ENST00000552909 SPATA31A6Q5VVP1 1343 aa10.38□□□□□ -0.75
LIMA1-216ENST00000552909 KIF1AQ12756 1690 aa10.38□□□□□ -0.75
LIMA1-216ENST00000552909 CCDC61Q9Y6R9 512 aa10.38□□□□□ -0.75
LIMA1-216ENST00000552909 ST20-MTHFSA0A0A6YYL1 179 aa10.38□□□□□ -0.75
LIMA1-216ENST00000552909 NGDNQ8NEJ9 315 aaKnown RBP10.38□□□□□ -0.75
LIMA1-216ENST00000552909 PHF23Q9BUL5 403 aaPredicted RBP10.38□□□□□ -0.75
LIMA1-216ENST00000552909 SPATA31A3Q5VYP0 1347 aa10.37□□□□□ -0.75
LIMA1-216ENST00000552909 EIF3AQ14152 1382 aaKnown RBP10.37□□□□□ -0.75
LIMA1-216ENST00000552909 PLEKHG5O94827 1062 aa10.37□□□□□ -0.75
LIMA1-216ENST00000552909 ACEP12821 1306 aa10.36□□□□□ -0.75
LIMA1-216ENST00000552909 EVC2Q86UK5 1308 aa10.36□□□□□ -0.75
LIMA1-216ENST00000552909 ADAMTS2O95450 1211 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms