RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 UPF2Q9HAU5 1272 aaKnown RBP6.15□□□□□ -1.42
LIMA1-214ENST00000552783 SYCP2Q9BX26 1530 aa6.15□□□□□ -1.43
LIMA1-214ENST00000552783 RNF17Q9BXT8 1623 aaKnown RBP6.15□□□□□ -1.43
LIMA1-214ENST00000552783 CDC42BPBQ9Y5S2 1711 aa6.15□□□□□ -1.43
LIMA1-214ENST00000552783 DDIT3P35638 169 aa6.15□□□□□ -1.43
LIMA1-214ENST00000552783 MYH16Q9H6N6 1097 aa6.15□□□□□ -1.43
LIMA1-214ENST00000552783 CHMP5Q9NZZ3 219 aa6.15□□□□□ -1.43
LIMA1-214ENST00000552783 MRE11P49959 708 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 TNPO1Q92973 898 aaKnown RBP6.14□□□□□ -1.43
LIMA1-214ENST00000552783 SHROOM2Q13796 1616 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 CDCA8Q53HL2 280 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 PMFBP1Q8TBY8 1022 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 TSR2Q969E8 191 aaKnown RBP6.14□□□□□ -1.43
LIMA1-214ENST00000552783 TRAK1Q9UPV9 953 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 RRP9O43818 475 aaKnown RBP6.14□□□□□ -1.43
LIMA1-214ENST00000552783 CFAP70Q5T0N1 1121 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 RBM42Q9BTD8 480 aaKnown RBP6.14□□□□□ -1.43
LIMA1-214ENST00000552783 IQGAP1P46940 1657 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 SYNMO15061 1565 aa6.14□□□□□ -1.43
LIMA1-214ENST00000552783 MADDQ8WXG6 1647 aa6.13□□□□□ -1.43
LIMA1-214ENST00000552783 ARHGEF5Q12774 1597 aa6.13□□□□□ -1.43
LIMA1-214ENST00000552783 UNC13BO14795 1591 aa6.13□□□□□ -1.43
LIMA1-214ENST00000552783 STK26Q9P289 416 aa6.13□□□□□ -1.43
LIMA1-214ENST00000552783 EIF2AK4Q9P2K8 1649 aaKnown RBP6.13□□□□□ -1.43
LIMA1-214ENST00000552783 KIF2CQ99661 725 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 STAG3Q9UJ98 1225 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 SCAF11Q99590 1463 aaKnown RBP6.12□□□□□ -1.43
LIMA1-214ENST00000552783 RBM10P98175 930 aaKnown RBP6.12□□□□□ -1.43
LIMA1-214ENST00000552783 MVPQ14764 893 aaKnown RBP6.12□□□□□ -1.43
LIMA1-214ENST00000552783 SLC12A5Q9H2X9 1139 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 RWDD1Q9H446 243 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-214ENST00000552783 AK9Q5TCS8 1911 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 TRIM27P14373 513 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 GLIPR1L2Q4G1C9 344 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 PLXNC1O60486 1568 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 NPC1L1Q9UHC9 1359 aa6.12□□□□□ -1.43
LIMA1-214ENST00000552783 SHPRHQ149N8 1683 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 ERVK-7P63135 1459 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 MORC1Q86VD1 984 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 IQGAP3Q86VI3 1631 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 ADGRF5Q8IZF2 1346 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 CEP152O94986 1710 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 NCOA3Q9Y6Q9 1424 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 U2SURPO15042 1029 aaKnown RBP6.11□□□□□ -1.43
LIMA1-214ENST00000552783 MTHFSP49914 203 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 TMEM132EQ6IEE7 984 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 KIAA1211Q6ZU35 1233 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 CHAMP1Q96JM3 812 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 KANK1Q14678 1352 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 RIPK4P57078 832 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 LNPKQ9C0E8 428 aa6.11□□□□□ -1.43
LIMA1-214ENST00000552783 SSFA2P28290 1259 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 HSCBQ8IWL3 235 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 DZIP1LQ8IYY4 767 aaKnown RBP6.1□□□□□ -1.43
LIMA1-214ENST00000552783 SSH1Q8WYL5 1049 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 RUNDC1Q96C34 613 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 ARID3AQ99856 593 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 ATP10AO60312 1499 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 IQSEC2Q5JU85 1478 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 TTC37Q6PGP7 1564 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 EXOSC9Q06265 439 aaKnown RBP6.1□□□□□ -1.43
LIMA1-214ENST00000552783 ITPRIPQ8IWB1 547 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 NINLQ9Y2I6 1382 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 POLR3AO14802 1390 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-214ENST00000552783 RAB3GAP1Q15042 981 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 FTSJ3Q8IY81 847 aaKnown RBP6.1□□□□□ -1.43
LIMA1-214ENST00000552783 GAS2L2Q8NHY3 880 aa6.1□□□□□ -1.43
LIMA1-214ENST00000552783 TRIM44Q96DX7 344 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-214ENST00000552783 PREX2Q70Z35 1606 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 DDX11L8A8MPP1 907 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 TMEM57Q8N5G2 664 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 ERCC6L2Q5T890 1561 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 UGGT1Q9NYU2 1555 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 PKP1Q13835 747 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 SMC4Q9NTJ3 1288 aa6.09□□□□□ -1.43
LIMA1-214ENST00000552783 NOB1Q9ULX3 412 aaKnown RBP6.09□□□□□ -1.43
LIMA1-214ENST00000552783 SCAPERQ9BY12 1400 aa6.09□□□□□ -1.44
LIMA1-214ENST00000552783 NSD3Q9BZ95 1437 aa6.09□□□□□ -1.44
LIMA1-214ENST00000552783 U2AF1L5P0DN76 240 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 RBM25P49756 843 aaKnown RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 SRPK2P78362 688 aaKnown RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 U2AF1Q01081 240 aaKnown RBP eCLIP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 ZKSCAN2Q63HK3 967 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 SMC5Q8IY18 1101 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 C1orf115Q9H7X2 142 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 KDM5AP29375 1690 aaKnown RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 CLTCL1P53675 1640 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 ZMYM3Q14202 1370 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 MAST1Q9Y2H9 1570 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 HSP90AB1P08238 724 aaKnown RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 HDAC1Q13547 482 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 WDR63Q8IWG1 891 aa6.08□□□□□ -1.44
LIMA1-214ENST00000552783 JARID2Q92833 1246 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-214ENST00000552783 ZBTB40Q9NUA8 1239 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 SPHKAPQ2M3C7 1700 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.07□□□□□ -1.44
LIMA1-214ENST00000552783 NASPP49321 788 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-214ENST00000552783 MLECQ14165 292 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 PPP4R3CPQ6ZMV5 832 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms