RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	TMEM131L	A2VDJ0	1609 aa		13.53	□□□□□ -0.24
YBX3-215	ENST00000544504	CCDC125	Q86Z20	511 aa		13.52	□□□□□ -0.25
YBX3-215	ENST00000544504	MST1R	Q04912	1400 aa		13.52	□□□□□ -0.25
YBX3-215	ENST00000544504	MYOM2	P54296	1465 aa		13.52	□□□□□ -0.25
YBX3-215	ENST00000544504	SETBP1	Q9Y6X0	1596 aa		13.51	□□□□□ -0.25
YBX3-215	ENST00000544504	VGF	O15240	615 aa	Predicted RBP	13.51	□□□□□ -0.25
YBX3-215	ENST00000544504	NHSL1	Q5SYE7	1610 aa		13.5	□□□□□ -0.25
YBX3-215	ENST00000544504	ADAMTS2	O95450	1211 aa		13.5	□□□□□ -0.25
YBX3-215	ENST00000544504	TRPC5	Q9UL62	973 aa	Predicted RBP	13.5	□□□□□ -0.25
YBX3-215	ENST00000544504	KDM2A	Q9Y2K7	1162 aa		13.5	□□□□□ -0.25
YBX3-215	ENST00000544504	PTPRU	Q92729	1446 aa		13.49	□□□□□ -0.25
YBX3-215	ENST00000544504	USP21	Q9UK80	565 aa		13.49	□□□□□ -0.25
YBX3-215	ENST00000544504	IFT172	Q9UG01	1749 aa		13.49	□□□□□ -0.25
YBX3-215	ENST00000544504	PRAG1	Q86YV5	1406 aa		13.48	□□□□□ -0.25
YBX3-215	ENST00000544504	PPL	O60437	1756 aa		13.48	□□□□□ -0.25
YBX3-215	ENST00000544504	MYO5B	Q9ULV0	1848 aa		13.47	□□□□□ -0.25
YBX3-215	ENST00000544504	RALGAPB	Q86X10	1494 aa		13.47	□□□□□ -0.25
YBX3-215	ENST00000544504	NEXMIF	Q5QGS0	1516 aa		13.46	□□□□□ -0.25
YBX3-215	ENST00000544504	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.46	□□□□□ -0.25
YBX3-215	ENST00000544504	DDX17	Q92841	729 aa	Known RBP	13.46	□□□□□ -0.25
YBX3-215	ENST00000544504	NRXN1	Q9ULB1	1477 aa		13.45	□□□□□ -0.26
YBX3-215	ENST00000544504	KIAA1210	Q9ULL0	1709 aa		13.44	□□□□□ -0.26
YBX3-215	ENST00000544504	NBPF8	Q3BBV2	869 aa		13.44	□□□□□ -0.26
YBX3-215	ENST00000544504	ATRN	O75882	1429 aa		13.44	□□□□□ -0.26
YBX3-215	ENST00000544504	PTCH1	Q13635	1447 aa		13.44	□□□□□ -0.26
YBX3-215	ENST00000544504	ADGRL3	Q9HAR2	1447 aa		13.43	□□□□□ -0.26
YBX3-215	ENST00000544504	LAMC1	P11047	1609 aa		13.42	□□□□□ -0.26
YBX3-215	ENST00000544504	TRPM1	Q7Z4N2	1603 aa		13.42	□□□□□ -0.26
YBX3-215	ENST00000544504	XRN1	Q8IZH2	1706 aa	Known RBP	13.42	□□□□□ -0.26
YBX3-215	ENST00000544504	PIK3C2G	O75747	1445 aa		13.42	□□□□□ -0.26
YBX3-215	ENST00000544504	ROCK2	O75116	1388 aa	Known RBP	13.42	□□□□□ -0.26
YBX3-215	ENST00000544504	SOS2	Q07890	1332 aa	Predicted RBP	13.41	□□□□□ -0.26
YBX3-215	ENST00000544504	ADGRF5	Q8IZF2	1346 aa		13.41	□□□□□ -0.26
YBX3-215	ENST00000544504	GPRASP1	Q5JY77	1395 aa		13.41	□□□□□ -0.26
YBX3-215	ENST00000544504	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
YBX3-215	ENST00000544504	C1orf167	Q5SNV9	1468 aa		13.4	□□□□□ -0.26
YBX3-215	ENST00000544504	BLM	P54132	1417 aa	Predicted RBP	13.39	□□□□□ -0.27
YBX3-215	ENST00000544504	CARD11	Q9BXL7	1154 aa		13.39	□□□□□ -0.27
YBX3-215	ENST00000544504	C14orf93	Q9H972	538 aa	Known RBP	13.39	□□□□□ -0.27
YBX3-215	ENST00000544504	MET	P08581	1390 aa		13.39	□□□□□ -0.27
YBX3-215	ENST00000544504	BCL9L	Q86UU0	1499 aa		13.37	□□□□□ -0.27
YBX3-215	ENST00000544504	GJD4	Q96KN9	370 aa	Predicted RBP	13.37	□□□□□ -0.27
YBX3-215	ENST00000544504	NRXN3	Q9Y4C0	1643 aa		13.37	□□□□□ -0.27
YBX3-215	ENST00000544504	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.36	□□□□□ -0.27
YBX3-215	ENST00000544504	LRP5	O75197	1615 aa		13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	EIF3A	Q14152	1382 aa	Known RBP	13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	SLC24A1	O60721	1099 aa		13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	CFAP70	Q5T0N1	1121 aa		13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	ORAI2	Q96SN7	254 aa		13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	NALCN	Q8IZF0	1738 aa		13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.35	□□□□□ -0.27
YBX3-215	ENST00000544504	USP47	Q96K76	1375 aa		13.34	□□□□□ -0.27
YBX3-215	ENST00000544504	SF3B2	Q13435	895 aa	Known RBP	13.34	□□□□□ -0.27
YBX3-215	ENST00000544504	NBPF1	Q3BBV0	1214 aa		13.33	□□□□□ -0.28
YBX3-215	ENST00000544504	DEFB132	Q7Z7B7	95 aa		13.33	□□□□□ -0.28
YBX3-215	ENST00000544504	HSPA5	P11021	654 aa	Known RBP	13.31	□□□□□ -0.28
YBX3-215	ENST00000544504	ADGRB1	O14514	1584 aa		13.31	□□□□□ -0.28
YBX3-215	ENST00000544504	NPHP3	Q7Z494	1330 aa		13.31	□□□□□ -0.28
YBX3-215	ENST00000544504	UNC5CL	Q8IV45	518 aa		13.3	□□□□□ -0.28
YBX3-215	ENST00000544504	LRPPRC	P42704	1394 aa	Known RBP	13.28	□□□□□ -0.28
YBX3-215	ENST00000544504	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.28	□□□□□ -0.28
YBX3-215	ENST00000544504	ROBO2	Q9HCK4	1378 aa		13.27	□□□□□ -0.29
YBX3-215	ENST00000544504	ST20-MTHFS	A0A0A6YYL1	179 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	SLIT2	O94813	1529 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	GLI3	P10071	1580 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	ESCO1	Q5FWF5	840 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	TMEM132E	Q6IEE7	984 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	PXDN	Q92626	1479 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	ABCC11	Q96J66	1382 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	DLC1	Q96QB1	1528 aa		13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.26	□□□□□ -0.29
YBX3-215	ENST00000544504	SBNO2	Q9Y2G9	1366 aa		13.25	□□□□□ -0.29
YBX3-215	ENST00000544504	PSD	A5PKW4	1024 aa	Predicted RBP	13.25	□□□□□ -0.29
YBX3-215	ENST00000544504	CDCA8	Q53HL2	280 aa		13.25	□□□□□ -0.29
YBX3-215	ENST00000544504	SEPT12	Q8IYM1	358 aa		13.25	□□□□□ -0.29
YBX3-215	ENST00000544504	SIRT1	Q96EB6	747 aa		13.25	□□□□□ -0.29
YBX3-215	ENST00000544504	MARF1	Q9Y4F3	1742 aa	Known RBP	13.25	□□□□□ -0.29
YBX3-215	ENST00000544504	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.24	□□□□□ -0.29
YBX3-215	ENST00000544504	FOXO3	O43524	673 aa		13.24	□□□□□ -0.29
YBX3-215	ENST00000544504	BAG6	P46379	1132 aa		13.24	□□□□□ -0.29
YBX3-215	ENST00000544504	TRAK1	Q9UPV9	953 aa		13.24	□□□□□ -0.29
YBX3-215	ENST00000544504	TECPR2	O15040	1411 aa		13.23	□□□□□ -0.29
YBX3-215	ENST00000544504	KNDC1	Q76NI1	1749 aa		13.23	□□□□□ -0.29
YBX3-215	ENST00000544504	ONECUT3	O60422	494 aa	Predicted RBP	13.23	□□□□□ -0.29
YBX3-215	ENST00000544504	TMF1	P82094	1093 aa		13.23	□□□□□ -0.29
YBX3-215	ENST00000544504	KRT27	Q7Z3Y8	459 aa		13.23	□□□□□ -0.29
YBX3-215	ENST00000544504	XPC	Q01831	940 aa	Predicted RBP	13.22	□□□□□ -0.29
YBX3-215	ENST00000544504	VPS72	Q15906	364 aa		13.22	□□□□□ -0.29
YBX3-215	ENST00000544504	POGK	Q9P215	609 aa		13.22	□□□□□ -0.29
YBX3-215	ENST00000544504	STK26	Q9P289	416 aa		13.22	□□□□□ -0.29
YBX3-215	ENST00000544504	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.22	□□□□□ -0.29
YBX3-215	ENST00000544504	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.21	□□□□□ -0.29
YBX3-215	ENST00000544504	CDC42BPG	Q6DT37	1551 aa		13.2	□□□□□ -0.3
YBX3-215	ENST00000544504	TESK2	Q96S53	571 aa		13.2	□□□□□ -0.3
YBX3-215	ENST00000544504	SPATA31A3	Q5VYP0	1347 aa		13.19	□□□□□ -0.3
YBX3-215	ENST00000544504	CCDC7	Q96M83	1385 aa		13.19	□□□□□ -0.3
YBX3-215	ENST00000544504	QRICH2	Q9H0J4	1663 aa		13.18	□□□□□ -0.3
YBX3-215	ENST00000544504	BRWD3	Q6RI45	1802 aa		13.18	□□□□□ -0.3
YBX3-215	ENST00000544504	PUS7	Q96PZ0	661 aa	Known RBP	13.18	□□□□□ -0.3
YBX3-215	ENST00000544504	PRAM1	Q96QH2	718 aa		13.18	□□□□□ -0.3

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