RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 PRAM1Q96QH2 718 aa18.95■□□□□ 0.62
LDB3-207ENST00000542786 PELP1Q8IZL8 1130 aaKnown RBP18.94■□□□□ 0.62
LDB3-207ENST00000542786 CABP2Q9NPB3 220 aa18.94■□□□□ 0.62
LDB3-207ENST00000542786 POLR3AO14802 1390 aaPredicted RBP18.94■□□□□ 0.62
LDB3-207ENST00000542786 CD163L1Q9NR16 1453 aa18.93■□□□□ 0.62
LDB3-207ENST00000542786 ABCC11Q96J66 1382 aa18.93■□□□□ 0.62
LDB3-207ENST00000542786 SENP3Q9H4L4 574 aaPredicted RBP18.92■□□□□ 0.62
LDB3-207ENST00000542786 SHPRHQ149N8 1683 aa18.92■□□□□ 0.62
LDB3-207ENST00000542786 SAFB2Q14151 953 aaKnown RBP eCLIP18.92■□□□□ 0.62
LDB3-207ENST00000542786 NSD2O96028 1365 aa18.92■□□□□ 0.62
LDB3-207ENST00000542786 ESF1Q9H501 851 aaKnown RBP18.91■□□□□ 0.62
LDB3-207ENST00000542786 ATAD2Q6PL18 1390 aa18.91■□□□□ 0.62
LDB3-207ENST00000542786 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.9■□□□□ 0.62
LDB3-207ENST00000542786 ZNF521Q96K83 1311 aa18.9■□□□□ 0.62
LDB3-207ENST00000542786 PLEKHH1Q9ULM0 1364 aa18.9■□□□□ 0.62
LDB3-207ENST00000542786 KNDC1Q76NI1 1749 aa18.9■□□□□ 0.62
LDB3-207ENST00000542786 A0A1W2PP64 1363 aa18.9■□□□□ 0.62
LDB3-207ENST00000542786 TMEM2Q9UHN6 1383 aa18.9■□□□□ 0.62
LDB3-207ENST00000542786 MINK1Q8N4C8 1332 aaPredicted RBP18.9■□□□□ 0.62
LDB3-207ENST00000542786 WDR43Q15061 677 aaKnown RBP eCLIP18.9■□□□□ 0.62
LDB3-207ENST00000542786 PPP4R2Q9NY27 417 aa18.9■□□□□ 0.62
LDB3-207ENST00000542786 TECPR2O15040 1411 aa18.89■□□□□ 0.61
LDB3-207ENST00000542786 CGNL1Q0VF96 1302 aa18.89■□□□□ 0.61
LDB3-207ENST00000542786 NLRP1Q9C000 1473 aa18.89■□□□□ 0.61
LDB3-207ENST00000542786 METP08581 1390 aa18.88■□□□□ 0.61
LDB3-207ENST00000542786 CDCA7LQ96GN5 454 aa18.88■□□□□ 0.61
LDB3-207ENST00000542786 TSHZ2Q9NRE2 1034 aa18.88■□□□□ 0.61
LDB3-207ENST00000542786 MORC1Q86VD1 984 aa18.87■□□□□ 0.61
LDB3-207ENST00000542786 POGKQ9P215 609 aa18.87■□□□□ 0.61
LDB3-207ENST00000542786 SALL2Q9Y467 1007 aaPredicted RBP18.87■□□□□ 0.61
LDB3-207ENST00000542786 C3P01024 1663 aa18.87■□□□□ 0.61
LDB3-207ENST00000542786 CPS1P31327 1500 aa18.86■□□□□ 0.61
LDB3-207ENST00000542786 MED14O60244 1454 aa18.86■□□□□ 0.61
LDB3-207ENST00000542786 SRPK2P78362 688 aaKnown RBP18.85■□□□□ 0.61
LDB3-207ENST00000542786 ADAMTS13Q76LX8 1427 aa18.85■□□□□ 0.61
LDB3-207ENST00000542786 ANKRD26Q9UPS8 1709 aa18.85■□□□□ 0.61
LDB3-207ENST00000542786 FAM135BQ49AJ0 1406 aa18.84■□□□□ 0.61
LDB3-207ENST00000542786 CDK19Q9BWU1 502 aa18.84■□□□□ 0.61
LDB3-207ENST00000542786 WAPLQ7Z5K2 1190 aa18.82■□□□□ 0.6
LDB3-207ENST00000542786 SIRT1Q96EB6 747 aa18.82■□□□□ 0.6
LDB3-207ENST00000542786 RCAN3Q9UKA8 241 aa18.82■□□□□ 0.6
LDB3-207ENST00000542786 FER1L4A9Z1Z3 1794 aa18.82■□□□□ 0.6
LDB3-207ENST00000542786 ARHGAP23Q9P227 1491 aa18.82■□□□□ 0.6
LDB3-207ENST00000542786 RRP1P56182 461 aaKnown RBP18.81■□□□□ 0.6
LDB3-207ENST00000542786 ATP7BP35670 1465 aa18.8■□□□□ 0.6
LDB3-207ENST00000542786 PLEKHG1Q9ULL1 1385 aa18.8■□□□□ 0.6
LDB3-207ENST00000542786 SLIT1O75093 1534 aa18.8■□□□□ 0.6
LDB3-207ENST00000542786 HDGFP51858 240 aaKnown RBP18.8■□□□□ 0.6
LDB3-207ENST00000542786 IQSEC2Q5JU85 1478 aa18.79■□□□□ 0.6
LDB3-207ENST00000542786 TERF2IPQ9NYB0 399 aa18.79■□□□□ 0.6
LDB3-207ENST00000542786 CEBPAP49715 358 aaPredicted RBP18.78■□□□□ 0.6
LDB3-207ENST00000542786 CCDC146Q8IYE0 955 aa18.78■□□□□ 0.6
LDB3-207ENST00000542786 COL3A1P02461 1466 aaPredicted RBP18.78■□□□□ 0.6
LDB3-207ENST00000542786 TRHP20396 242 aaPredicted RBP18.77■□□□□ 0.6
LDB3-207ENST00000542786 DUSP27Q5VZP5 1158 aa18.77■□□□□ 0.6
LDB3-207ENST00000542786 TRMT2AQ8IZ69 625 aaKnown RBP18.77■□□□□ 0.6
LDB3-207ENST00000542786 LTKP29376 864 aa18.77■□□□□ 0.6
LDB3-207ENST00000542786 MTHFSP49914 203 aa18.77■□□□□ 0.6
LDB3-207ENST00000542786 KIF20BQ96Q89 1820 aa18.77■□□□□ 0.59
LDB3-207ENST00000542786 FYB1O15117 783 aa18.76■□□□□ 0.59
LDB3-207ENST00000542786 TNNT2P45379 298 aaPredicted RBP18.76■□□□□ 0.59
LDB3-207ENST00000542786 NGEFQ8N5V2 710 aa18.76■□□□□ 0.59
LDB3-207ENST00000542786 ADGRB2O60241 1585 aa18.75■□□□□ 0.59
LDB3-207ENST00000542786 APAF1O14727 1248 aa18.75■□□□□ 0.59
LDB3-207ENST00000542786 CABP1Q9NZU7 370 aa18.75■□□□□ 0.59
LDB3-207ENST00000542786 CPSF1Q10570 1443 aaKnown RBP18.75■□□□□ 0.59
LDB3-207ENST00000542786 B4GALNT3Q6L9W6 998 aa18.75■□□□□ 0.59
LDB3-207ENST00000542786 ROBO2Q9HCK4 1378 aa18.75■□□□□ 0.59
LDB3-207ENST00000542786 WASLO00401 505 aaPredicted RBP18.74■□□□□ 0.59
LDB3-207ENST00000542786 SLFN5Q08AF3 891 aa18.74■□□□□ 0.59
LDB3-207ENST00000542786 TXNDC2Q86VQ3 553 aa18.74■□□□□ 0.59
LDB3-207ENST00000542786 GOLGA2Q08379 1002 aa18.73■□□□□ 0.59
LDB3-207ENST00000542786 CDC42BPGQ6DT37 1551 aa18.72■□□□□ 0.59
LDB3-207ENST00000542786 PTPRUQ92729 1446 aa18.72■□□□□ 0.59
LDB3-207ENST00000542786 HDGFL2Q7Z4V5 671 aaPredicted RBP18.72■□□□□ 0.59
LDB3-207ENST00000542786 GGNBP2Q9H3C7 697 aa18.72■□□□□ 0.59
LDB3-207ENST00000542786 PHF23Q9BUL5 403 aaPredicted RBP18.71■□□□□ 0.59
LDB3-207ENST00000542786 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.71■□□□□ 0.59
LDB3-207ENST00000542786 SPINK5Q9NQ38 1064 aaPredicted RBP18.71■□□□□ 0.59
LDB3-207ENST00000542786 MON2Q7Z3U7 1717 aa18.7■□□□□ 0.58
LDB3-207ENST00000542786 CFAP53Q96M91 514 aa18.7■□□□□ 0.58
LDB3-207ENST00000542786 DMRT2Q9Y5R5 561 aa18.69■□□□□ 0.58
LDB3-207ENST00000542786 PPIP5K1Q6PFW1 1433 aa18.69■□□□□ 0.58
LDB3-207ENST00000542786 PNPLA6Q8IY17 1366 aa18.69■□□□□ 0.58
LDB3-207ENST00000542786 RUNDC1Q96C34 613 aa18.69■□□□□ 0.58
LDB3-207ENST00000542786 EDC4Q6P2E9 1401 aaKnown RBP18.68■□□□□ 0.58
LDB3-207ENST00000542786 AKAP12Q02952 1782 aa18.68■□□□□ 0.58
LDB3-207ENST00000542786 TOPAZ1Q8N9V7 1692 aa18.68■□□□□ 0.58
LDB3-207ENST00000542786 DIP2AQ14689 1571 aa18.67■□□□□ 0.58
LDB3-207ENST00000542786 PRR36Q9H6K5 1346 aa18.67■□□□□ 0.58
LDB3-207ENST00000542786 NCBP3Q53F19 620 aaKnown RBP18.67■□□□□ 0.58
LDB3-207ENST00000542786 NUDT16Q96DE0 195 aaKnown RBP18.66■□□□□ 0.58
LDB3-207ENST00000542786 WWC1Q8IX03 1113 aa18.65■□□□□ 0.58
LDB3-207ENST00000542786 EXOC6Q8TAG9 804 aa18.65■□□□□ 0.58
LDB3-207ENST00000542786 NKTRP30414 1462 aaKnown RBP18.65■□□□□ 0.58
LDB3-207ENST00000542786 E9PSI1 815 aa18.65■□□□□ 0.58
LDB3-207ENST00000542786 PTCH1Q13635 1447 aa18.64■□□□□ 0.57
LDB3-207ENST00000542786 XRN1Q8IZH2 1706 aaKnown RBP18.64■□□□□ 0.57
LDB3-207ENST00000542786 CEP170BQ9Y4F5 1589 aaPredicted RBP18.63■□□□□ 0.57
LDB3-207ENST00000542786 TCP11L2Q8N4U5 519 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms