RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 IFIT2P09913 472 aaKnown RBP18.05■□□□□ 0.48
SMARCA4-207ENST00000541122 PNISRQ8TF01 805 aaKnown RBP18.05■□□□□ 0.48
SMARCA4-207ENST00000541122 RUFY1Q96T51 708 aa18.05■□□□□ 0.48
SMARCA4-207ENST00000541122 VGFO15240 615 aaPredicted RBP18.05■□□□□ 0.48
SMARCA4-207ENST00000541122 PRPF40AO75400 957 aaKnown RBP18.05■□□□□ 0.48
SMARCA4-207ENST00000541122 CCDC47Q96A33 483 aaKnown RBP18.04■□□□□ 0.48
SMARCA4-207ENST00000541122 UQCRHLA0A096LP55 91 aa18.04■□□□□ 0.48
SMARCA4-207ENST00000541122 UQCRHP07919 91 aa18.04■□□□□ 0.48
SMARCA4-207ENST00000541122 ZSCAN30Q86W11 494 aa18.04■□□□□ 0.48
SMARCA4-207ENST00000541122 TRIM5Q9C035 493 aa18.04■□□□□ 0.48
SMARCA4-207ENST00000541122 SCAPERQ9BY12 1400 aa18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 CPLX1O14810 134 aa18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 TOMM22Q9NS69 142 aa18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 CT47B1P0C2W7 299 aaPredicted RBP18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 CASKIN1Q8WXD9 1431 aa18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 K7ELQ4 463 aaPredicted RBP18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 PDCP20941 246 aa18.03■□□□□ 0.48
SMARCA4-207ENST00000541122 CALRP27797 417 aaKnown RBP18.02■□□□□ 0.48
SMARCA4-207ENST00000541122 UNC13AQ9UPW8 1703 aa18.02■□□□□ 0.47
SMARCA4-207ENST00000541122 PSMA5P28066 241 aa18.01■□□□□ 0.47
SMARCA4-207ENST00000541122 PPP2R1AP30153 589 aa18■□□□□ 0.47
SMARCA4-207ENST00000541122 PDCL2Q8N4E4 241 aa18■□□□□ 0.47
SMARCA4-207ENST00000541122 CSB-PGBD3P0DP91 1061 aa17.99■□□□□ 0.47
SMARCA4-207ENST00000541122 NEXNQ0ZGT2 675 aa17.99■□□□□ 0.47
SMARCA4-207ENST00000541122 OLFM4Q6UX06 510 aa17.99■□□□□ 0.47
SMARCA4-207ENST00000541122 LEKR1Q6ZMV7 388 aa17.99■□□□□ 0.47
SMARCA4-207ENST00000541122 CCDC112Q8NEF3 446 aa17.98■□□□□ 0.47
SMARCA4-207ENST00000541122 NCOA2Q15596 1464 aa17.98■□□□□ 0.47
SMARCA4-207ENST00000541122 NGDNQ8NEJ9 315 aaKnown RBP17.98■□□□□ 0.47
SMARCA4-207ENST00000541122 C9orf78Q9NZ63 289 aaPredicted RBP17.98■□□□□ 0.47
SMARCA4-207ENST00000541122 CCDC192P0DO97 292 aa17.98■□□□□ 0.47
SMARCA4-207ENST00000541122 NEK4P51957 841 aa17.97■□□□□ 0.47
SMARCA4-207ENST00000541122 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.97■□□□□ 0.47
SMARCA4-207ENST00000541122 PODXL2Q9NZ53 605 aa17.97■□□□□ 0.47
SMARCA4-207ENST00000541122 WDR33Q9C0J8 1336 aaKnown RBP17.97■□□□□ 0.47
SMARCA4-207ENST00000541122 IGF1RP08069 1367 aa17.97■□□□□ 0.47
SMARCA4-207ENST00000541122 CC2D2AQ9P2K1 1620 aa17.97■□□□□ 0.47
SMARCA4-207ENST00000541122 G3BP1Q13283 466 aaKnown RBP eCLIP17.96■□□□□ 0.472e-7■■□□□ 14.1
SMARCA4-207ENST00000541122 TCP11L2Q8N4U5 519 aa17.96■□□□□ 0.47
SMARCA4-207ENST00000541122 PCMTD1Q96MG8 357 aaPredicted RBP17.96■□□□□ 0.47
SMARCA4-207ENST00000541122 ZNF330Q9Y3S2 320 aaPredicted RBP17.96■□□□□ 0.47
SMARCA4-207ENST00000541122 ANKRD50Q9ULJ7 1429 aa17.96■□□□□ 0.47
SMARCA4-207ENST00000541122 MARCH6O60337 910 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 FKBP5Q13451 457 aaPredicted RBP17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 SDF4Q9BRK5 362 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 TRDNQ13061 729 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 MLECQ14165 292 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 CNTROBQ8N137 903 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 AEBP1Q8IUX7 1158 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 PDCL3Q9H2J4 239 aa17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 KINO60870 393 aaKnown RBP17.95■□□□□ 0.46
SMARCA4-207ENST00000541122 UBE2Q2Q8WVN8 375 aa17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 NCAPD3P42695 1498 aa17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 HFM1A2PYH4 1435 aa17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 DDX58O95786 925 aaKnown RBP17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 RDXP35241 583 aaKnown RBP17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 DCTN1Q14203 1278 aa17.94■□□□□ 0.46
SMARCA4-207ENST00000541122 WDR63Q8IWG1 891 aa17.93■□□□□ 0.46
SMARCA4-207ENST00000541122 H0YHG0 523 aa17.93■□□□□ 0.46
SMARCA4-207ENST00000541122 SAFBQ15424 915 aaKnown RBP eCLIP17.93■□□□□ 0.46
SMARCA4-207ENST00000541122 TEFQ10587 303 aa17.93■□□□□ 0.46
SMARCA4-207ENST00000541122 PLEKHH2Q8IVE3 1493 aa17.93■□□□□ 0.46
SMARCA4-207ENST00000541122 GNAI3P08754 354 aa17.93■□□□□ 0.46
SMARCA4-207ENST00000541122 PDIA4P13667 645 aaKnown RBP17.92■□□□□ 0.46
SMARCA4-207ENST00000541122 HIP1O00291 1037 aa17.91■□□□□ 0.46
SMARCA4-207ENST00000541122 MVPQ14764 893 aaKnown RBP17.91■□□□□ 0.46
SMARCA4-207ENST00000541122 C1orf141Q5JVX7 400 aa17.91■□□□□ 0.46
SMARCA4-207ENST00000541122 ARAP1Q96P48 1450 aa17.91■□□□□ 0.46
SMARCA4-207ENST00000541122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.9■□□□□ 0.461e-8■■□□□ 13.7
SMARCA4-207ENST00000541122 JPH4Q96JJ6 628 aa17.9■□□□□ 0.46
SMARCA4-207ENST00000541122 ZNF396Q96N95 335 aaPredicted RBP17.9■□□□□ 0.46
SMARCA4-207ENST00000541122 FIBPO43427 364 aa17.89■□□□□ 0.45
SMARCA4-207ENST00000541122 BCAR3O75815 825 aa17.89■□□□□ 0.45
SMARCA4-207ENST00000541122 NUTM2DQ5VT03 806 aaPredicted RBP17.89■□□□□ 0.45
SMARCA4-207ENST00000541122 SMC2O95347 1197 aa17.89■□□□□ 0.45
SMARCA4-207ENST00000541122 TSPYL1Q9H0U9 437 aa17.89■□□□□ 0.45
SMARCA4-207ENST00000541122 CCDC191Q8NCU4 936 aa17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 SMARCE1Q969G3 411 aa17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 UBTFL1P0CB47 393 aaPredicted RBP17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 EXOSC9Q06265 439 aaKnown RBP17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 PDILTQ8N807 584 aa17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 EIF3JO75822 258 aaKnown RBP17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 LTV1Q96GA3 475 aaPredicted RBP17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 EID1Q9Y6B2 187 aa17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 KIAA1107Q9UPP5 1409 aa17.88■□□□□ 0.45
SMARCA4-207ENST00000541122 APPP05067 770 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 CCDC27Q2M243 656 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 ERLIN1O75477 346 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 FBXW7Q969H0 707 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 TSPYL4Q9UJ04 414 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 MCM5P33992 734 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 SPC24Q8NBT2 197 aa17.87■□□□□ 0.45
SMARCA4-207ENST00000541122 PATL2C9JE40 543 aaKnown RBP17.86■□□□□ 0.45
SMARCA4-207ENST00000541122 KIF2AO00139 706 aaPredicted RBP17.86■□□□□ 0.45
SMARCA4-207ENST00000541122 CAGE1Q8TC20 777 aa17.86■□□□□ 0.45
SMARCA4-207ENST00000541122 MINK1Q8N4C8 1332 aaPredicted RBP17.86■□□□□ 0.45
SMARCA4-207ENST00000541122 MTHFSP49914 203 aa17.86■□□□□ 0.45
SMARCA4-207ENST00000541122 KRT85P78386 507 aa17.86■□□□□ 0.45
SMARCA4-207ENST00000541122 CHD1LQ86WJ1 897 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms