RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 ABCC11Q96J66 1382 aa16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 PLEKHG1Q9ULL1 1385 aa16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 TXNDC2Q86VQ3 553 aa16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 TMC1Q8TDI8 760 aa16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 PNISRQ8TF01 805 aaKnown RBP16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 CEP170BQ9Y4F5 1589 aaPredicted RBP16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 KNDC1Q76NI1 1749 aa16.69■□□□□ 0.26
AP003559.1-201ENST00000540906 BRD4O60885 1362 aaPredicted RBP16.69■□□□□ 0.26
AP003559.1-201ENST00000540906 MED14O60244 1454 aa16.69■□□□□ 0.26
AP003559.1-201ENST00000540906 BCANQ96GW7 911 aa16.68■□□□□ 0.26
AP003559.1-201ENST00000540906 PTPRUQ92729 1446 aa16.67■□□□□ 0.26
AP003559.1-201ENST00000540906 HDGFP51858 240 aaKnown RBP16.67■□□□□ 0.26
AP003559.1-201ENST00000540906 NSD3Q9BZ95 1437 aa16.66■□□□□ 0.26
AP003559.1-201ENST00000540906 CPS1P31327 1500 aa16.66■□□□□ 0.26
AP003559.1-201ENST00000540906 NLRP13Q86W25 1043 aa16.66■□□□□ 0.26
AP003559.1-201ENST00000540906 SLC26A8Q96RN1 970 aa16.66■□□□□ 0.26
AP003559.1-201ENST00000540906 TECPR2O15040 1411 aa16.66■□□□□ 0.26
AP003559.1-201ENST00000540906 SENP3-EIF4A1A0A087X0R7 540 aa16.66■□□□□ 0.26
AP003559.1-201ENST00000540906 NPC1L1Q9UHC9 1359 aa16.65■□□□□ 0.26
AP003559.1-201ENST00000540906 PUS7Q96PZ0 661 aaKnown RBP16.65■□□□□ 0.26
AP003559.1-201ENST00000540906 ROBO2Q9HCK4 1378 aa16.64■□□□□ 0.25
AP003559.1-201ENST00000540906 PPP2R1AP30153 589 aa16.64■□□□□ 0.25
AP003559.1-201ENST00000540906 SRPK2P78362 688 aaKnown RBP16.64■□□□□ 0.25
AP003559.1-201ENST00000540906 CDK19Q9BWU1 502 aa16.64■□□□□ 0.25
AP003559.1-201ENST00000540906 ZNF142P52746 1687 aaPredicted RBP16.63■□□□□ 0.25
AP003559.1-201ENST00000540906 THEMISQ8N1K5 641 aaPredicted RBP16.63■□□□□ 0.25
AP003559.1-201ENST00000540906 CD163L1Q9NR16 1453 aa16.63■□□□□ 0.25
AP003559.1-201ENST00000540906 EID1Q9Y6B2 187 aa16.62■□□□□ 0.25
AP003559.1-201ENST00000540906 ANKRD36BQ8N2N9 1353 aa16.62■□□□□ 0.25
AP003559.1-201ENST00000540906 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.61■□□□□ 0.25
AP003559.1-201ENST00000540906 USP32Q8NFA0 1604 aa16.61■□□□□ 0.25
AP003559.1-201ENST00000540906 FAM135BQ49AJ0 1406 aa16.61■□□□□ 0.25
AP003559.1-201ENST00000540906 A0A1W2PP64 1363 aa16.6■□□□□ 0.25
AP003559.1-201ENST00000540906 ATAD2Q6PL18 1390 aa16.58■□□□□ 0.25
AP003559.1-201ENST00000540906 SIRT1Q96EB6 747 aa16.58■□□□□ 0.24
AP003559.1-201ENST00000540906 ZBED9Q6R2W3 1325 aa16.56■□□□□ 0.24
AP003559.1-201ENST00000540906 NCKAP5LQ9HCH0 1330 aa16.56■□□□□ 0.24
AP003559.1-201ENST00000540906 WASLO00401 505 aaPredicted RBP16.56■□□□□ 0.24
AP003559.1-201ENST00000540906 TBX22Q9Y458 520 aa16.56■□□□□ 0.24
AP003559.1-201ENST00000540906 CABP1Q9NZU7 370 aa16.56■□□□□ 0.24
AP003559.1-201ENST00000540906 XRN1Q8IZH2 1706 aaKnown RBP16.56■□□□□ 0.24
AP003559.1-201ENST00000540906 DIP2AQ14689 1571 aa16.55■□□□□ 0.24
AP003559.1-201ENST00000540906 SETD1BQ9UPS6 1966 aaKnown RBP16.55■□□□□ 0.24
AP003559.1-201ENST00000540906 NINLQ9Y2I6 1382 aa16.55■□□□□ 0.24
AP003559.1-201ENST00000540906 AMOTL2Q9Y2J4 779 aa16.54■□□□□ 0.24
AP003559.1-201ENST00000540906 PRR36Q9H6K5 1346 aa16.54■□□□□ 0.24
AP003559.1-201ENST00000540906 ADGRB2O60241 1585 aa16.54■□□□□ 0.24
AP003559.1-201ENST00000540906 HSPA2P54652 639 aa16.54■□□□□ 0.24
AP003559.1-201ENST00000540906 TNNT2P45379 298 aaPredicted RBP16.52■□□□□ 0.24
AP003559.1-201ENST00000540906 ATP7BP35670 1465 aa16.52■□□□□ 0.23
AP003559.1-201ENST00000540906 MORC1Q86VD1 984 aa16.52■□□□□ 0.23
AP003559.1-201ENST00000540906 BLMP54132 1417 aaPredicted RBP16.51■□□□□ 0.23
AP003559.1-201ENST00000540906 CGNL1Q0VF96 1302 aa16.51■□□□□ 0.23
AP003559.1-201ENST00000540906 PPIP5K1Q6PFW1 1433 aa16.51■□□□□ 0.23
AP003559.1-201ENST00000540906 PTCH1Q13635 1447 aa16.5■□□□□ 0.23
AP003559.1-201ENST00000540906 NUDT16Q96DE0 195 aaKnown RBP16.5■□□□□ 0.23
AP003559.1-201ENST00000540906 PHF23Q9BUL5 403 aaPredicted RBP16.5■□□□□ 0.23
AP003559.1-201ENST00000540906 ADAMTS8Q9UP79 889 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 ANKRD26Q9UPS8 1709 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 KCNA6P17658 529 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 ANKLE2Q86XL3 938 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 GGNBP2Q9H3C7 697 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 TERF2IPQ9NYB0 399 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 TOPAZ1Q8N9V7 1692 aa16.49■□□□□ 0.23
AP003559.1-201ENST00000540906 KIF20BQ96Q89 1820 aa16.48■□□□□ 0.23
AP003559.1-201ENST00000540906 SHPRHQ149N8 1683 aa16.48■□□□□ 0.23
AP003559.1-201ENST00000540906 CPSF1Q10570 1443 aaKnown RBP16.48■□□□□ 0.23
AP003559.1-201ENST00000540906 CDC42BPGQ6DT37 1551 aa16.47■□□□□ 0.23
AP003559.1-201ENST00000540906 NUTM2FA1L443 756 aa16.47■□□□□ 0.23
AP003559.1-201ENST00000540906 FYB1O15117 783 aa16.47■□□□□ 0.23
AP003559.1-201ENST00000540906 CHD2O14647 1828 aaKnown RBP16.47■□□□□ 0.23
AP003559.1-201ENST00000540906 NSD2O96028 1365 aa16.47■□□□□ 0.23
AP003559.1-201ENST00000540906 HDGFL2Q7Z4V5 671 aaPredicted RBP16.47■□□□□ 0.23
AP003559.1-201ENST00000540906 NKTRP30414 1462 aaKnown RBP16.46■□□□□ 0.23
AP003559.1-201ENST00000540906 MON2Q7Z3U7 1717 aa16.46■□□□□ 0.23
AP003559.1-201ENST00000540906 AKAP12Q02952 1782 aa16.46■□□□□ 0.23
AP003559.1-201ENST00000540906 SALL2Q9Y467 1007 aaPredicted RBP16.46■□□□□ 0.23
AP003559.1-201ENST00000540906 POLR3AO14802 1390 aaPredicted RBP16.45■□□□□ 0.22
AP003559.1-201ENST00000540906 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.45■□□□□ 0.22
AP003559.1-201ENST00000540906 INSRP06213 1382 aa16.44■□□□□ 0.22
AP003559.1-201ENST00000540906 RGPD8O14715 1765 aaPredicted RBP16.44■□□□□ 0.22
AP003559.1-201ENST00000540906 NPHP4O75161 1426 aaPredicted RBP16.44■□□□□ 0.22
AP003559.1-201ENST00000540906 CCDC61Q9Y6R9 512 aa16.44■□□□□ 0.22
AP003559.1-201ENST00000540906 ITSN1Q15811 1721 aa16.44■□□□□ 0.22
AP003559.1-201ENST00000540906 PIK3R4Q99570 1358 aa16.44■□□□□ 0.22
AP003559.1-201ENST00000540906 ZRANB1Q9UGI0 708 aa16.43■□□□□ 0.22
AP003559.1-201ENST00000540906 LMTK3Q96Q04 1460 aa16.43■□□□□ 0.22
AP003559.1-201ENST00000540906 MTHFSP49914 203 aa16.42■□□□□ 0.22
AP003559.1-201ENST00000540906 RBM33Q96EV2 1170 aaKnown RBP16.42■□□□□ 0.22
AP003559.1-201ENST00000540906 FBLN1P23142 703 aa16.42■□□□□ 0.22
AP003559.1-201ENST00000540906 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
AP003559.1-201ENST00000540906 SUPT16HQ9Y5B9 1047 aaKnown RBP16.41■□□□□ 0.22
AP003559.1-201ENST00000540906 NALCNQ8IZF0 1738 aa16.41■□□□□ 0.22
AP003559.1-201ENST00000540906 NRKQ7Z2Y5 1582 aa16.41■□□□□ 0.22
AP003559.1-201ENST00000540906 NME9Q86XW9 330 aa16.4■□□□□ 0.22
AP003559.1-201ENST00000540906 CCDC146Q8IYE0 955 aa16.4■□□□□ 0.22
AP003559.1-201ENST00000540906 EDC4Q6P2E9 1401 aaKnown RBP16.4■□□□□ 0.22
AP003559.1-201ENST00000540906 SMG6Q86US8 1419 aaKnown RBP16.4■□□□□ 0.22
AP003559.1-201ENST00000540906 COL3A1P02461 1466 aaPredicted RBP16.38■□□□□ 0.21
AP003559.1-201ENST00000540906 FMN2Q9NZ56 1722 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms