RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 PDZRN3Q9UPQ7 1066 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 PCDHB15Q9Y5E8 787 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 IQGAP2Q13576 1575 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 ZNF521Q96K83 1311 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 RAD21O60216 631 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 CLUAP1Q96AJ1 413 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 SUPT6HQ7KZ85 1726 aaKnown RBP13.38□□□□□ -0.27
RTN3-208ENST00000537981 CD2BP2O95400 341 aaKnown RBP13.38□□□□□ -0.27
RTN3-208ENST00000537981 RBSNQ9H1K0 784 aa13.38□□□□□ -0.27
RTN3-208ENST00000537981 GOLGA2Q08379 1002 aa13.38□□□□□ -0.27
RTN3-208ENST00000537981 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.37□□□□□ -0.27
RTN3-208ENST00000537981 E9PSI1 815 aa13.37□□□□□ -0.27
RTN3-208ENST00000537981 SSFA2P28290 1259 aa13.37□□□□□ -0.27
RTN3-208ENST00000537981 SLFN5Q08AF3 891 aa13.37□□□□□ -0.27
RTN3-208ENST00000537981 UGGT2Q9NYU1 1516 aa13.36□□□□□ -0.27
RTN3-208ENST00000537981 SASS6Q6UVJ0 657 aa13.36□□□□□ -0.27
RTN3-208ENST00000537981 NCOA3Q9Y6Q9 1424 aa13.36□□□□□ -0.27
RTN3-208ENST00000537981 CTTNBP2Q8WZ74 1663 aa13.36□□□□□ -0.27
RTN3-208ENST00000537981 SHROOM2Q13796 1616 aa13.36□□□□□ -0.27
RTN3-208ENST00000537981 CAMSAP2Q08AD1 1489 aa13.35□□□□□ -0.27
RTN3-208ENST00000537981 CERS3Q8IU89 383 aa13.35□□□□□ -0.27
RTN3-208ENST00000537981 KIF20AO95235 890 aa13.35□□□□□ -0.27
RTN3-208ENST00000537981 RAB3GAP1Q15042 981 aa13.35□□□□□ -0.27
RTN3-208ENST00000537981 HSCBQ8IWL3 235 aa13.35□□□□□ -0.27
RTN3-208ENST00000537981 ZKSCAN5Q9Y2L8 839 aa13.35□□□□□ -0.27
RTN3-208ENST00000537981 MTERF4Q7Z6M4 381 aaKnown RBP13.34□□□□□ -0.27
RTN3-208ENST00000537981 RGS22Q8NE09 1264 aa13.34□□□□□ -0.27
RTN3-208ENST00000537981 MTMR7Q9Y216 660 aa13.34□□□□□ -0.27
RTN3-208ENST00000537981 RLBP1P12271 317 aa13.34□□□□□ -0.27
RTN3-208ENST00000537981 C17orf53Q8N3J3 647 aaPredicted RBP13.34□□□□□ -0.27
RTN3-208ENST00000537981 GTPBP4Q9BZE4 634 aaKnown RBP13.34□□□□□ -0.27
RTN3-208ENST00000537981 CHAMP1Q96JM3 812 aa13.33□□□□□ -0.28
RTN3-208ENST00000537981 DDX49Q9Y6V7 483 aaKnown RBP13.33□□□□□ -0.28
RTN3-208ENST00000537981 PLEKHH2Q8IVE3 1493 aa13.33□□□□□ -0.28
RTN3-208ENST00000537981 PZPP20742 1482 aa13.33□□□□□ -0.28
RTN3-208ENST00000537981 PDLIM2Q96JY6 352 aa13.33□□□□□ -0.28
RTN3-208ENST00000537981 DISP1Q96F81 1524 aa13.32□□□□□ -0.28
RTN3-208ENST00000537981 LETM1O95202 739 aaPredicted RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 TNNT2P45379 298 aaPredicted RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 PRIM1P49642 420 aaKnown RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 VASPP50552 380 aaPredicted RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 NEUROD2Q15784 382 aa13.32□□□□□ -0.28
RTN3-208ENST00000537981 FOXD4L5Q5VV16 416 aaPredicted RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 CAVIN1Q6NZI2 390 aaKnown RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 FOXD4L4Q8WXT5 416 aaPredicted RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 RBM27Q9P2N5 1060 aaKnown RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 CARMIL2Q6F5E8 1435 aa13.32□□□□□ -0.28
RTN3-208ENST00000537981 NCLP19338 710 aaKnown RBP13.32□□□□□ -0.28
RTN3-208ENST00000537981 PTPRGP23470 1445 aa13.31□□□□□ -0.28
RTN3-208ENST00000537981 RALGAPBQ86X10 1494 aa13.31□□□□□ -0.28
RTN3-208ENST00000537981 ZNF644Q9H582 1327 aaPredicted RBP13.31□□□□□ -0.28
RTN3-208ENST00000537981 TCOF1Q13428 1488 aaKnown RBP13.31□□□□□ -0.28
RTN3-208ENST00000537981 GBP4Q96PP9 640 aa13.31□□□□□ -0.28
RTN3-208ENST00000537981 RBM42Q9BTD8 480 aaKnown RBP13.31□□□□□ -0.28
RTN3-208ENST00000537981 BCCIPQ9P287 314 aaKnown RBP eCLIP13.31□□□□□ -0.28
RTN3-208ENST00000537981 U2AF2P26368 475 aaKnown RBP eCLIP13.3□□□□□ -0.283e-6■■■□□ 15.2
RTN3-208ENST00000537981 RBM25P49756 843 aaKnown RBP13.3□□□□□ -0.28
RTN3-208ENST00000537981 IRX5P78411 483 aaPredicted RBP13.3□□□□□ -0.28
RTN3-208ENST00000537981 ZBTB9Q96C00 473 aa13.3□□□□□ -0.28
RTN3-208ENST00000537981 BCL2L13Q9BXK5 485 aa13.3□□□□□ -0.28
RTN3-208ENST00000537981 ZSCAN23Q3MJ62 389 aa13.3□□□□□ -0.28
RTN3-208ENST00000537981 TRMT2AQ8IZ69 625 aaKnown RBP13.3□□□□□ -0.28
RTN3-208ENST00000537981 ZFP91Q96JP5 570 aaPredicted RBP13.3□□□□□ -0.28
RTN3-208ENST00000537981 MYRIPQ8NFW9 859 aa13.29□□□□□ -0.28
RTN3-208ENST00000537981 NKTRP30414 1462 aaKnown RBP13.29□□□□□ -0.28
RTN3-208ENST00000537981 APAF1O14727 1248 aa13.28□□□□□ -0.28
RTN3-208ENST00000537981 HSP90AB1P08238 724 aaKnown RBP13.28□□□□□ -0.28
RTN3-208ENST00000537981 SKOR2Q2VWA4 1001 aaPredicted RBP13.28□□□□□ -0.28
RTN3-208ENST00000537981 SMC5Q8IY18 1101 aa13.28□□□□□ -0.28
RTN3-208ENST00000537981 DISP3Q9P2K9 1392 aa13.28□□□□□ -0.28
RTN3-208ENST00000537981 RNF214Q8ND24 703 aa13.28□□□□□ -0.28
RTN3-208ENST00000537981 CGNL1Q0VF96 1302 aa13.27□□□□□ -0.28
RTN3-208ENST00000537981 EHBP1L1Q8N3D4 1523 aa13.27□□□□□ -0.28
RTN3-208ENST00000537981 PKP1Q13835 747 aa13.27□□□□□ -0.29
RTN3-208ENST00000537981 KLHL40Q2TBA0 621 aa13.27□□□□□ -0.29
RTN3-208ENST00000537981 GAS2L2Q8NHY3 880 aa13.27□□□□□ -0.29
RTN3-208ENST00000537981 BAG4O95429 457 aaKnown RBP13.26□□□□□ -0.29
RTN3-208ENST00000537981 HS1BP3Q53T59 392 aa13.26□□□□□ -0.29
RTN3-208ENST00000537981 DNTTIP2Q5QJE6 756 aaKnown RBP13.26□□□□□ -0.29
RTN3-208ENST00000537981 KIAA0556O60303 1618 aa13.26□□□□□ -0.29
RTN3-208ENST00000537981 WDR43Q15061 677 aaKnown RBP eCLIP13.26□□□□□ -0.29
RTN3-208ENST00000537981 NBPF1Q3BBV0 1214 aa13.26□□□□□ -0.29
RTN3-208ENST00000537981 MCTP1Q6DN14 999 aa13.26□□□□□ -0.29
RTN3-208ENST00000537981 FTSJ3Q8IY81 847 aaKnown RBP13.26□□□□□ -0.29
RTN3-208ENST00000537981 BCL2L12Q9HB09 334 aa13.26□□□□□ -0.29
RTN3-208ENST00000537981 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.26□□□□□ -0.296e-7■■■□□ 14.6
RTN3-208ENST00000537981 CSPP1Q1MSJ5 1256 aa13.25□□□□□ -0.29
RTN3-208ENST00000537981 KIF2CQ99661 725 aa13.25□□□□□ -0.29
RTN3-208ENST00000537981 NSFL1CQ9UNZ2 370 aaKnown RBP13.25□□□□□ -0.29
RTN3-208ENST00000537981 KCNJ4P48050 445 aa13.24□□□□□ -0.29
RTN3-208ENST00000537981 ZNF445P59923 1031 aa13.24□□□□□ -0.29
RTN3-208ENST00000537981 ZNF771Q7L3S4 317 aaPredicted RBP13.24□□□□□ -0.29
RTN3-208ENST00000537981 PLB1Q6P1J6 1458 aa13.24□□□□□ -0.29
RTN3-208ENST00000537981 PPP2R1AP30153 589 aa13.23□□□□□ -0.29
RTN3-208ENST00000537981 DAPK1P53355 1430 aa13.23□□□□□ -0.29
RTN3-208ENST00000537981 UHRF1BP1Q6BDS2 1440 aa13.23□□□□□ -0.29
RTN3-208ENST00000537981 PDE3AQ14432 1141 aa13.22□□□□□ -0.29
RTN3-208ENST00000537981 AEBP1Q8IUX7 1158 aa13.22□□□□□ -0.29
RTN3-208ENST00000537981 GPT2Q8TD30 523 aa13.22□□□□□ -0.29
RTN3-208ENST00000537981 CHMP4CQ96CF2 233 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms