RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 MADDQ8WXG6 1647 aa18.86■□□□□ 0.61
SYNE1-236ENST00000537750 TRIM44Q96DX7 344 aaPredicted RBP18.85■□□□□ 0.61
SYNE1-236ENST00000537750 MVPQ14764 893 aaKnown RBP18.84■□□□□ 0.61
SYNE1-236ENST00000537750 RUNDC1Q96C34 613 aa18.84■□□□□ 0.61
SYNE1-236ENST00000537750 TNPO1Q92973 898 aaKnown RBP18.83■□□□□ 0.6
SYNE1-236ENST00000537750 PREX2Q70Z35 1606 aa18.82■□□□□ 0.6
SYNE1-236ENST00000537750 FTSJ3Q8IY81 847 aaKnown RBP18.82■□□□□ 0.6
SYNE1-236ENST00000537750 POLR3AO14802 1390 aaPredicted RBP18.82■□□□□ 0.6
SYNE1-236ENST00000537750 CFAP70Q5T0N1 1121 aa18.82■□□□□ 0.6
SYNE1-236ENST00000537750 FOXD4L1Q9NU39 408 aa18.81■□□□□ 0.6
SYNE1-236ENST00000537750 ARHGAP5Q13017 1502 aa18.81■□□□□ 0.6
SYNE1-236ENST00000537750 MORC1Q86VD1 984 aa18.8■□□□□ 0.6
SYNE1-236ENST00000537750 SCAPERQ9BY12 1400 aa18.8■□□□□ 0.6
SYNE1-236ENST00000537750 DDIT3P35638 169 aa18.8■□□□□ 0.6
SYNE1-236ENST00000537750 DZIP1LQ8IYY4 767 aaKnown RBP18.8■□□□□ 0.6
SYNE1-236ENST00000537750 WDR63Q8IWG1 891 aa18.79■□□□□ 0.6
SYNE1-236ENST00000537750 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
SYNE1-236ENST00000537750 ZKSCAN2Q63HK3 967 aa18.79■□□□□ 0.6
SYNE1-236ENST00000537750 MAST1Q9Y2H9 1570 aa18.79■□□□□ 0.6
SYNE1-236ENST00000537750 TSR2Q969E8 191 aaKnown RBP18.78■□□□□ 0.6
SYNE1-236ENST00000537750 ERVK-7P63135 1459 aa18.78■□□□□ 0.6
SYNE1-236ENST00000537750 KDM5AP29375 1690 aaKnown RBP18.77■□□□□ 0.6
SYNE1-236ENST00000537750 ISY1Q9ULR0 285 aaKnown RBP18.76■□□□□ 0.59
SYNE1-236ENST00000537750 HSP90AB1P08238 724 aaKnown RBP18.76■□□□□ 0.59
SYNE1-236ENST00000537750 ITPRIPQ8IWB1 547 aa18.76■□□□□ 0.59
SYNE1-236ENST00000537750 DUOX2Q9NRD8 1548 aa18.75■□□□□ 0.59
SYNE1-236ENST00000537750 CEP152O94986 1710 aa18.75■□□□□ 0.59
SYNE1-236ENST00000537750 NCOA3Q9Y6Q9 1424 aa18.75■□□□□ 0.59
SYNE1-236ENST00000537750 MTHFSP49914 203 aa18.75■□□□□ 0.59
SYNE1-236ENST00000537750 SMC4Q9NTJ3 1288 aa18.75■□□□□ 0.59
SYNE1-236ENST00000537750 TRIM27P14373 513 aa18.74■□□□□ 0.59
SYNE1-236ENST00000537750 KIAA1211Q6ZU35 1233 aa18.74■□□□□ 0.59
SYNE1-236ENST00000537750 CD2BP2O95400 341 aaKnown RBP18.73■□□□□ 0.59
SYNE1-236ENST00000537750 GBP4Q96PP9 640 aa18.73■□□□□ 0.59
SYNE1-236ENST00000537750 SLC12A5Q9H2X9 1139 aa18.73■□□□□ 0.59
SYNE1-236ENST00000537750 HDAC1Q13547 482 aaPredicted RBP18.73■□□□□ 0.59
SYNE1-236ENST00000537750 SMC5Q8IY18 1101 aa18.73■□□□□ 0.59
SYNE1-236ENST00000537750 ERCC6Q03468 1493 aa18.73■□□□□ 0.59
SYNE1-236ENST00000537750 IQSEC2Q5JU85 1478 aa18.73■□□□□ 0.59
SYNE1-236ENST00000537750 TTC37Q6PGP7 1564 aa18.73■□□□□ 0.59
SYNE1-236ENST00000537750 NSD3Q9BZ95 1437 aa18.72■□□□□ 0.59
SYNE1-236ENST00000537750 RBM25P49756 843 aaKnown RBP18.72■□□□□ 0.59
SYNE1-236ENST00000537750 RAB3GAP1Q15042 981 aa18.72■□□□□ 0.59
SYNE1-236ENST00000537750 STAC3Q96MF2 364 aa18.72■□□□□ 0.59
SYNE1-236ENST00000537750 LNPKQ9C0E8 428 aa18.72■□□□□ 0.59
SYNE1-236ENST00000537750 ADGRF5Q8IZF2 1346 aa18.72■□□□□ 0.59
SYNE1-236ENST00000537750 SHPRHQ149N8 1683 aa18.72■□□□□ 0.59
SYNE1-236ENST00000537750 TPM2P07951 284 aa18.71■□□□□ 0.59
SYNE1-236ENST00000537750 EXOSC9Q06265 439 aaKnown RBP18.71■□□□□ 0.59
SYNE1-236ENST00000537750 SNX21Q969T3 373 aa18.71■□□□□ 0.59
SYNE1-236ENST00000537750 SPHKAPQ2M3C7 1700 aa18.71■□□□□ 0.59
SYNE1-236ENST00000537750 SSH1Q8WYL5 1049 aa18.71■□□□□ 0.59
SYNE1-236ENST00000537750 U2AF1L5P0DN76 240 aaPredicted RBP18.7■□□□□ 0.58
SYNE1-236ENST00000537750 U2AF1Q01081 240 aaKnown RBP eCLIP18.7■□□□□ 0.58
SYNE1-236ENST00000537750 RBM42Q9BTD8 480 aaKnown RBP18.7■□□□□ 0.58
SYNE1-236ENST00000537750 CCDC27Q2M243 656 aa18.69■□□□□ 0.58
SYNE1-236ENST00000537750 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.69■□□□□ 0.58
SYNE1-236ENST00000537750 SKOR2Q2VWA4 1001 aaPredicted RBP18.69■□□□□ 0.58
SYNE1-236ENST00000537750 DDX19BQ9UMR2 479 aa18.69■□□□□ 0.58
SYNE1-236ENST00000537750 SSFA2P28290 1259 aa18.68■□□□□ 0.58
SYNE1-236ENST00000537750 TMEM57Q8N5G2 664 aa18.68■□□□□ 0.58
SYNE1-236ENST00000537750 KIF2CQ99661 725 aa18.68■□□□□ 0.58
SYNE1-236ENST00000537750 CIZ1Q9ULV3 898 aaPredicted RBP18.68■□□□□ 0.58
SYNE1-236ENST00000537750 NASPP49321 788 aaPredicted RBP18.68■□□□□ 0.58
SYNE1-236ENST00000537750 PDCL3Q9H2J4 239 aa18.68■□□□□ 0.58
SYNE1-236ENST00000537750 NOB1Q9ULX3 412 aaKnown RBP18.68■□□□□ 0.58
SYNE1-236ENST00000537750 RBM10P98175 930 aaKnown RBP18.67■□□□□ 0.58
SYNE1-236ENST00000537750 CLTCL1P53675 1640 aa18.67■□□□□ 0.58
SYNE1-236ENST00000537750 ATF7IPQ6VMQ6 1270 aa18.67■□□□□ 0.58
SYNE1-236ENST00000537750 SLC24A1O60721 1099 aa18.67■□□□□ 0.58
SYNE1-236ENST00000537750 KANK1Q14678 1352 aa18.66■□□□□ 0.58
SYNE1-236ENST00000537750 TRPM2O94759 1503 aa18.66■□□□□ 0.58
SYNE1-236ENST00000537750 CCDC173Q0VFZ6 552 aa18.66■□□□□ 0.58
SYNE1-236ENST00000537750 ZSCAN30Q86W11 494 aa18.65■□□□□ 0.58
SYNE1-236ENST00000537750 NUCB1Q02818 461 aa18.65■□□□□ 0.58
SYNE1-236ENST00000537750 CFAP53Q96M91 514 aa18.65■□□□□ 0.58
SYNE1-236ENST00000537750 PPP1R9BQ96SB3 815 aa18.65■□□□□ 0.58
SYNE1-236ENST00000537750 ZBTB40Q9NUA8 1239 aa18.65■□□□□ 0.58
SYNE1-236ENST00000537750 GAS2L2Q8NHY3 880 aa18.64■□□□□ 0.57
SYNE1-236ENST00000537750 TRAK1Q9UPV9 953 aa18.64■□□□□ 0.57
SYNE1-236ENST00000537750 DDX49Q9Y6V7 483 aaKnown RBP18.64■□□□□ 0.57
SYNE1-236ENST00000537750 PTPRTO14522 1441 aa18.63■□□□□ 0.57
SYNE1-236ENST00000537750 CHD1LQ86WJ1 897 aa18.63■□□□□ 0.57
SYNE1-236ENST00000537750 K7ELQ4 463 aaPredicted RBP18.62■□□□□ 0.57
SYNE1-236ENST00000537750 OFD1O75665 1012 aa18.62■□□□□ 0.57
SYNE1-236ENST00000537750 RIPK4P57078 832 aa18.62■□□□□ 0.57
SYNE1-236ENST00000537750 TRAPPC8Q9Y2L5 1435 aa18.62■□□□□ 0.57
SYNE1-236ENST00000537750 ZNF518AQ6AHZ1 1483 aa18.62■□□□□ 0.57
SYNE1-236ENST00000537750 AFAP1Q8N556 730 aa18.62■□□□□ 0.57
SYNE1-236ENST00000537750 MSNP26038 577 aaKnown RBP18.61■□□□□ 0.57
SYNE1-236ENST00000537750 ANP32BQ92688 251 aaKnown RBP18.6■□□□□ 0.57
SYNE1-236ENST00000537750 ANKRD45Q5TZF3 282 aa18.6■□□□□ 0.57
SYNE1-236ENST00000537750 EFCAB2Q5VUJ9 269 aa18.6■□□□□ 0.57
SYNE1-236ENST00000537750 U2SURPO15042 1029 aaKnown RBP18.6■□□□□ 0.57
SYNE1-236ENST00000537750 BAG4O95429 457 aaKnown RBP18.6■□□□□ 0.57
SYNE1-236ENST00000537750 NCLP19338 710 aaKnown RBP18.6■□□□□ 0.57
SYNE1-236ENST00000537750 R3HCC1Q9Y3T6 440 aaKnown RBP18.6■□□□□ 0.57
SYNE1-236ENST00000537750 UGGT1Q9NYU2 1555 aa18.59■□□□□ 0.57
SYNE1-236ENST00000537750 GOLGA6L22H0YM25 854 aa18.59■□□□□ 0.57
SYNE1-236ENST00000537750 TRIM35Q9UPQ4 493 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms