RNA–Protein interactions for RNA: ENST00000536823.5

YBX3-206, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 840 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-206ENST00000536823 FMN1Q68DA7 1419 aa11.51□□□□□ -0.57
YBX3-206ENST00000536823 COL17A1Q9UMD9 1497 aaPredicted RBP11.51□□□□□ -0.57
YBX3-206ENST00000536823 CAMK2BQ13554 666 aa11.5□□□□□ -0.57
YBX3-206ENST00000536823 NBR1Q14596 966 aa11.5□□□□□ -0.57
YBX3-206ENST00000536823 RNF40O75150 1001 aa11.49□□□□□ -0.57
YBX3-206ENST00000536823 GGCXP38435 758 aa11.49□□□□□ -0.57
YBX3-206ENST00000536823 HECW1Q76N89 1606 aa11.49□□□□□ -0.57
YBX3-206ENST00000536823 CADPS2Q86UW7 1296 aa11.48□□□□□ -0.57
YBX3-206ENST00000536823 NKX2-3Q8TAU0 364 aa11.48□□□□□ -0.57
YBX3-206ENST00000536823 CDCA7LQ96GN5 454 aa11.48□□□□□ -0.57
YBX3-206ENST00000536823 CDK13Q14004 1512 aaKnown RBP11.48□□□□□ -0.57
YBX3-206ENST00000536823 APLP1P51693 650 aa11.45□□□□□ -0.58
YBX3-206ENST00000536823 PLEKHD1A6NEE1 506 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 NBPF26B4DH59 902 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 PRSS12P56730 875 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 FAM198AQ9UFP1 575 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 PNMA3Q9UL41 463 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 ARAP3Q8WWN8 1544 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 NEO1Q92859 1461 aa11.44□□□□□ -0.58
YBX3-206ENST00000536823 PHLDB1Q86UU1 1377 aa11.43□□□□□ -0.58
YBX3-206ENST00000536823 TATDN2Q93075 761 aa11.43□□□□□ -0.58
YBX3-206ENST00000536823 CLIP1P30622 1438 aa11.43□□□□□ -0.58
YBX3-206ENST00000536823 PCF11O94913 1555 aaKnown RBP11.42□□□□□ -0.58
YBX3-206ENST00000536823 TTC37Q6PGP7 1564 aa11.42□□□□□ -0.58
YBX3-206ENST00000536823 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.42□□□□□ -0.58
YBX3-206ENST00000536823 C3orf80F5H4A9 247 aa11.42□□□□□ -0.58
YBX3-206ENST00000536823 HDGFP51858 240 aaKnown RBP11.42□□□□□ -0.58
YBX3-206ENST00000536823 PKDCCQ504Y2 493 aa11.42□□□□□ -0.58
YBX3-206ENST00000536823 TMUB1Q9BVT8 246 aa11.41□□□□□ -0.58
YBX3-206ENST00000536823 CASKIN1Q8WXD9 1431 aa11.41□□□□□ -0.58
YBX3-206ENST00000536823 COPS2P61201 443 aa11.4□□□□□ -0.58
YBX3-206ENST00000536823 MYT1Q01538 1121 aa11.4□□□□□ -0.58
YBX3-206ENST00000536823 TRIM67Q6ZTA4 783 aa11.4□□□□□ -0.58
YBX3-206ENST00000536823 CFAP74Q9C0B2 1584 aa11.4□□□□□ -0.58
YBX3-206ENST00000536823 LRRIQ1Q96JM4 1722 aa11.4□□□□□ -0.58
YBX3-206ENST00000536823 FYCO1Q9BQS8 1478 aa11.39□□□□□ -0.59
YBX3-206ENST00000536823 TROQ12816 1431 aaPredicted RBP11.39□□□□□ -0.59
YBX3-206ENST00000536823 CERKQ8TCT0 537 aa11.39□□□□□ -0.59
YBX3-206ENST00000536823 ATP1B4Q9UN42 357 aaPredicted RBP11.39□□□□□ -0.59
YBX3-206ENST00000536823 CCDC18Q5T9S5 1454 aa11.38□□□□□ -0.59
YBX3-206ENST00000536823 NECTIN2Q92692 538 aa11.38□□□□□ -0.59
YBX3-206ENST00000536823 KIF14Q15058 1648 aa11.38□□□□□ -0.59
YBX3-206ENST00000536823 FANCAO15360 1455 aa11.38□□□□□ -0.59
YBX3-206ENST00000536823 FRMPD1Q5SYB0 1578 aa11.37□□□□□ -0.59
YBX3-206ENST00000536823 CDK11AQ9UQ88 783 aaPredicted RBP11.37□□□□□ -0.59
YBX3-206ENST00000536823 ADGRL1O94910 1474 aa11.37□□□□□ -0.59
YBX3-206ENST00000536823 POTECB2RU33 542 aa11.36□□□□□ -0.59
YBX3-206ENST00000536823 DGAT1O75907 488 aa11.36□□□□□ -0.59
YBX3-206ENST00000536823 AKNAQ7Z591 1439 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 SLC19A1P41440 591 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 PLCB2Q00722 1185 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 PDIA6Q15084 440 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 NUDT18Q6ZVK8 323 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 MYO5CQ9NQX4 1742 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 PLCH2O75038 1416 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 CEP162Q5TB80 1403 aa11.35□□□□□ -0.59
YBX3-206ENST00000536823 DENND4BO75064 1496 aaPredicted RBP11.34□□□□□ -0.59
YBX3-206ENST00000536823 RICTORQ6R327 1708 aa11.34□□□□□ -0.59
YBX3-206ENST00000536823 ZPR1O75312 459 aa11.33□□□□□ -0.6
YBX3-206ENST00000536823 RAPGEF3O95398 923 aa11.33□□□□□ -0.6
YBX3-206ENST00000536823 ARHGEF40Q8TER5 1519 aa11.33□□□□□ -0.6
YBX3-206ENST00000536823 ZMYM4Q5VZL5 1548 aa11.32□□□□□ -0.6
YBX3-206ENST00000536823 RNF223E7ERA6 249 aa11.31□□□□□ -0.6
YBX3-206ENST00000536823 POGZQ7Z3K3 1410 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 PRR20EP86478 221 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 PRR20CP86479 221 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 PRR20DP86480 221 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 PRR20BP86481 221 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 PRR20AP86496 221 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 SPRYD7Q5W111 196 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 TREML4Q6UXN2 200 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 SLF2Q8IX21 1173 aa11.3□□□□□ -0.6
YBX3-206ENST00000536823 BBXQ8WY36 941 aaPredicted RBP11.3□□□□□ -0.6
YBX3-206ENST00000536823 EMID1Q96A84 441 aaPredicted RBP11.3□□□□□ -0.6
YBX3-206ENST00000536823 PREX2Q70Z35 1606 aa11.29□□□□□ -0.6
YBX3-206ENST00000536823 SPDYE16A6NNV3 312 aaPredicted RBP11.29□□□□□ -0.6
YBX3-206ENST00000536823 SWT1Q5T5J6 900 aaKnown RBP11.29□□□□□ -0.6
YBX3-206ENST00000536823 ZNF598Q86UK7 904 aaKnown RBP11.29□□□□□ -0.6
YBX3-206ENST00000536823 ARHGAP5Q13017 1502 aa11.29□□□□□ -0.6
YBX3-206ENST00000536823 SCAPERQ9BY12 1400 aa11.28□□□□□ -0.6
YBX3-206ENST00000536823 FAM187AA6NFU0 413 aa11.28□□□□□ -0.6
YBX3-206ENST00000536823 PRIM1P49642 420 aaKnown RBP11.28□□□□□ -0.6
YBX3-206ENST00000536823 EFCAB2Q5VUJ9 269 aa11.28□□□□□ -0.6
YBX3-206ENST00000536823 RBM27Q9P2N5 1060 aaKnown RBP11.28□□□□□ -0.6
YBX3-206ENST00000536823 MAGI2Q86UL8 1455 aa11.27□□□□□ -0.6
YBX3-206ENST00000536823 CDC42BPBQ9Y5S2 1711 aa11.27□□□□□ -0.61
YBX3-206ENST00000536823 ZFYVE16Q7Z3T8 1539 aa11.27□□□□□ -0.61
YBX3-206ENST00000536823 LCE2AQ5TA79 106 aaPredicted RBP11.26□□□□□ -0.61
YBX3-206ENST00000536823 CDC42BPAQ5VT25 1732 aa11.26□□□□□ -0.61
YBX3-206ENST00000536823 ZNF518AQ6AHZ1 1483 aa11.25□□□□□ -0.61
YBX3-206ENST00000536823 GRXCR2A6NFK2 248 aa11.25□□□□□ -0.61
YBX3-206ENST00000536823 CDHR5Q9HBB8 845 aa11.25□□□□□ -0.61
YBX3-206ENST00000536823 PCDHB3Q9Y5E6 796 aa11.25□□□□□ -0.61
YBX3-206ENST00000536823 YEATS2Q9ULM3 1422 aa11.25□□□□□ -0.61
YBX3-206ENST00000536823 ABCC1P33527 1531 aa11.25□□□□□ -0.61
YBX3-206ENST00000536823 KDM5CP41229 1560 aa11.24□□□□□ -0.61
YBX3-206ENST00000536823 ADAMTSL3P82987 1691 aa11.24□□□□□ -0.61
YBX3-206ENST00000536823 BCORL1Q5H9F3 1711 aa11.24□□□□□ -0.61
YBX3-206ENST00000536823 SLC4A3P48751 1232 aa11.24□□□□□ -0.61
YBX3-206ENST00000536823 ZNF697Q5TEC3 545 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms